Rroxscaffold_2G00099860

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004838
Physical Location & Seq
Forward (+)
21620875 .. 21621987
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099860.1

Sequence Viewer

Length: 1113 bp
ATGGCTCCCTTTGTTGCAGAGAGTACCAGCAATTCCGTTGGCACAAAAAAGAAAACCCTAGGCAGGAGAAAAGTCGAAATGAAGAAGGTAGAAGCACTTGACCACCGTCACGTCACTTTCTCCAAGCGCAAGAAAGGACTTTTCCAAAAAGCCGACCAACTCAGCAGCCTCACTGGCACCGAAATCGCGGTGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCGGCACCCCAAGCTGTGACGCCGTCACCGATCGTTACCTTGCCGGGCTGTCTTCTAACCAAAATGCCAATTGCATCAGTTGTCAAGACGATAATGGATCTATGAATGTGGAAAGCATTCATTCGACGAGTTTAAACTGCTCCCAAAACGACAATGTCCATTATCAAAACAATGGCGCGGTAGTCGGATCTATGATAGTTGAAACCACTCCTTCGACTTCGAACTGTTCTGTGAATGAAAACGACGCTGCCGTGATCGGATCTATGATAGTTGAAATCACTGCTTCGAAGTGTTCCCCCATTAGGGTTTTGGAGAACAATATTTTGGATGACGGAAAGTTGGAATTAATGGCCCCTAATGGCAATGCCGATTATCAAAACGACAATGCCGTGGTTGGATCTATAATCGTTGAAACCACTCCTTCCCGTTCAAACTTTCCCCAAAGCGACGGTGTAGTGGTCGGATCGAAGATAGTTGAAACGACTCCTTTGAGTTCGAGCTGTCCCGAAATTAGGGTTTTGGAGGACGATATAATGGGTGATGGATACTTGAATTTGATGAACGACACCGTTTTTCCTGTCAAGCCAGGCGAGTATCGCGGAGGGACTAATGGTGGATCTGAGGTGGGGGAGATGAGTGGGGAGATGAGTGGGGAGATGATTGAGGAAATGATAGAGGAGATGATGAAAGAGAAAGACGACGTGCCGGGTTGTAATGAATTCATGACTGCCTTGATTAGGGTTTTACTTCCAACGGCGACTTCAAATTACTATACCTCATTGTTGGTTATGGAGGATGAAGATGAACTTCTTATGGAAAATAGAGGGCTGGGGACTTGTCACTTCAACCCATATGGGGATTGGAGGTGTGGAGGCATATGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

370

Amino Acids

39.94

Weight (kDa)

4.55

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 34 - 76 4.6e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 176, 230
AccII CGCG 3 cut(s) 188, 404, 825
AciI CCGC 4 cut(s) 188, 210, 404, 825
AclWI GGATC 6 cut(s) 331, 421, 493, 631, 697, 850
AcsI RAATTY 2 cut(s) 778, 944
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 6 cut(s) 63, 528, 529, 738, 963, 1081
AgsI TTSAA 8 cut(s) 428, 500, 638, 657, 704, 778, 990, 1072
AjiI CACGTC 2 cut(s) 112, 928
AjnI CCWGG 1 cut(s) 811
AjuI GAANNNNNNNTTGG 4 cut(s) 533, 565, 970, 1002
AluBI AGCT 2 cut(s) 240, 726
AluI AGCT 2 cut(s) 240, 726
AlwI GGATC 6 cut(s) 331, 421, 493, 631, 697, 850
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 165, 473
ApoI RAATTY 2 cut(s) 778, 944
AseI ATTAAT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 342
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 2 cut(s) 129, 404
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 2 cut(s) 271, 933
AsuHPI GGTGA 2 cut(s) 244, 776
AsuII TTCGAA 2 cut(s) 446, 512
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 2 cut(s) 176, 230
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 177, 460
BccI CCATC 1 cut(s) 761
BceAI ACGGC 4 cut(s) 233, 461, 599, 996
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 813
BciVI GTATCC 1 cut(s) 764
BcnI CCSGG 2 cut(s) 271, 933
BfaI CTAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 764
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 166, 211, 474
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 3 cut(s) 167, 212, 475
Bme1390I CCNGG 3 cut(s) 271, 813, 933
BmgBI CACGTC 2 cut(s) 112, 928
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 4 cut(s) 6, 178, 232, 579
BmrFI CCNGG 3 cut(s) 271, 813, 933
BmsI GCATC 1 cut(s) 309
BoxI GACNNNNGTC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 270
Bpu14I TTCGAA 2 cut(s) 446, 512
BpuMI CCSGG 2 cut(s) 271, 933
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 58, 615
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 528, 529, 738, 963, 1081
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 1 cut(s) 813
BseDI CCNNGG 2 cut(s) 58, 615
BseGI GGATG 2 cut(s) 559, 1027
BseLI CCNNNNNNNGG 6 cut(s) 63, 528, 529, 738, 963, 1081
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 2 cut(s) 175, 837
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 917
BseXI GCAGC 2 cut(s) 177, 460
BseYI CCCAGC 1 cut(s) 1054
Bsh1236I CGCG 3 cut(s) 188, 404, 825
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 578
BshNI GGYRCC 2 cut(s) 176, 230
BsiEI CGRYCG 1 cut(s) 259
BsiSI CCGG 2 cut(s) 270, 932
BslFI GGGAC 3 cut(s) 714, 844, 1072
BslI CCNNNNNNNGG 6 cut(s) 63, 528, 529, 738, 963, 1081
BsmFI GGGAC 3 cut(s) 714, 844, 1072
BsmI GAATGC 2 cut(s) 212, 342
BsnI GGCC 1 cut(s) 578
Bsp119I TTCGAA 2 cut(s) 446, 512
Bsp143I GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
BspACI CCGC 4 cut(s) 188, 210, 404, 825
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 2 cut(s) 174, 838
BspFNI CGCG 3 cut(s) 188, 404, 825
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 4 cut(s) 6, 178, 232, 579
BspPI GGATC 6 cut(s) 331, 421, 493, 631, 697, 850
BspT104I TTCGAA 2 cut(s) 446, 512
BspT107I GGYRCC 2 cut(s) 176, 230
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 58, 615
BssMI GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 813
Bst4CI ACNGT 4 cut(s) 107, 452, 677, 796
BstACI GRCGYC 1 cut(s) 246
BstBI TTCGAA 2 cut(s) 446, 512
BstDEI CTNAG 2 cut(s) 161, 846
BstDSI CCRYGG 1 cut(s) 615
BstENI CCTNNNNNAGG 1 cut(s) 961
BstF5I GGATG 2 cut(s) 559, 1027
BstFNI CGCG 3 cut(s) 188, 404, 825
BstHHI GCGC 2 cut(s) 129, 404
BstKTI GATC 8 cut(s) 259, 326, 416, 483, 488, 626, 692, 845
BstMBI GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 174, 237, 822
BstNI CCWGG 1 cut(s) 813
BstPAI GACNNNNGTC 1 cut(s) 105
BstSCI CCNGG 3 cut(s) 269, 811, 931
BstUI CGCG 3 cut(s) 188, 404, 825
BstV1I GCAGC 2 cut(s) 177, 460
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 5 cut(s) 323, 413, 485, 623, 842
BstYI RGATCY 5 cut(s) 323, 413, 485, 623, 842
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 615
BtrI CACGTC 2 cut(s) 112, 928
BtsCI GGATG 2 cut(s) 559, 1027
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 2 cut(s) 171, 504
CciI TCATGA 1 cut(s) 948
CfoI GCGC 2 cut(s) 129, 404
Cfr13I GGNCC 1 cut(s) 577
CseI GACGC 2 cut(s) 254, 479
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 949
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 161, 846
DpnI GATC 8 cut(s) 258, 325, 415, 482, 487, 625, 691, 844
DpnII GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
DraI TTTAAA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 961
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 1 cut(s) 811
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 952
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 3 cut(s) 714, 844, 1072
FatI CATG 1 cut(s) 948
FauNDI CATATG 2 cut(s) 1078, 1103
Fnu4HI GCNGC 3 cut(s) 166, 211, 474
FokI GGATG 2 cut(s) 566, 1034
Fsp4HI GCNGC 3 cut(s) 166, 211, 474
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 128, 403
GluI GCNGC 3 cut(s) 166, 211, 474
GsaI CCCAGC 1 cut(s) 1058
HaeIII GGCC 1 cut(s) 578
HapII CCGG 2 cut(s) 270, 932
HgaI GACGC 2 cut(s) 254, 479
HhaI GCGC 2 cut(s) 129, 404
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 952
Hin6I GCGC 2 cut(s) 127, 402
HinP1I GCGC 2 cut(s) 127, 402
HinfI GANTC 1 cut(s) 709
HpaII CCGG 2 cut(s) 270, 932
HphI GGTGA 2 cut(s) 244, 776
Hpy188I TCNGA 5 cut(s) 205, 413, 485, 689, 847
Hpy188III TCNNGA 3 cut(s) 311, 731, 949
Hpy99I CGWCG 4 cut(s) 355, 473, 677, 929
HpyAV CCTTC 3 cut(s) 79, 447, 657
HpyCH4III ACNGT 4 cut(s) 107, 452, 677, 796
HpyCH4IV ACGT 2 cut(s) 111, 927
HpyCH4V TGCA 2 cut(s) 17, 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 237, 822
HpyF3I CTNAG 2 cut(s) 161, 846
HpySE526I ACGT 2 cut(s) 111, 927
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 952
HspAI GCGC 2 cut(s) 127, 402
Kzo9I GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
LmnI GCTCC 2 cut(s) 10, 371
Lsp1109I GCAGC 2 cut(s) 177, 460
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 111, 927
MaeIII GTNAC 6 cut(s) 107, 112, 242, 250, 260, 1064
MalI GATC 8 cut(s) 258, 325, 415, 482, 487, 625, 691, 844
MboI GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
MboII GAAGA 4 cut(s) 94, 270, 706, 1037
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 5 cut(s) 323, 413, 485, 623, 842
MluCI AATT 7 cut(s) 31, 295, 569, 735, 778, 944, 991
MlyI GAGTC 1 cut(s) 703
MmeI TCCRAC 5 cut(s) 391, 546, 601, 667, 1001
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 3 cut(s) 359, 572, 1111
MspI CCGG 2 cut(s) 270, 932
MspR9I CCNGG 3 cut(s) 271, 813, 933
MssI GTTTAAAC 1 cut(s) 360
MunI CAATTG 1 cut(s) 295
Mva1269I GAATGC 2 cut(s) 212, 342
MvaI CCWGG 1 cut(s) 813
MvnI CGCG 3 cut(s) 188, 404, 825
MwoI GCNNNNNNNGC 3 cut(s) 174, 237, 822
NciI CCSGG 2 cut(s) 271, 933
NdeI CATATG 2 cut(s) 1078, 1103
NdeII GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
NlaIII CATG 1 cut(s) 952
NlaIV GGNNCC 4 cut(s) 6, 178, 232, 579
NmuCI GTSAC 5 cut(s) 107, 112, 242, 250, 1064
NspV TTCGAA 2 cut(s) 446, 512
PagI TCATGA 1 cut(s) 948
PcsI WCGNNNNNNNCGW 5 cut(s) 192, 201, 252, 474, 612
PctI GAATGC 2 cut(s) 212, 342
PdmI GAANNNNTTC 1 cut(s) 342
PflFI GACNNNGTC 2 cut(s) 248, 380
PkrI GCNGC 3 cut(s) 167, 212, 475
Ple19I CGATCG 1 cut(s) 259
PleI GAGTC 1 cut(s) 703
PmeI GTTTAAAC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 703
PshAI GACNNNNGTC 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 811
PspFI CCCAGC 1 cut(s) 1054
PspGI CCWGG 1 cut(s) 811
PspN4I GGNNCC 4 cut(s) 6, 178, 232, 579
PspPI GGNCC 1 cut(s) 577
PsuI RGATCY 5 cut(s) 323, 413, 485, 623, 842
PsyI GACNNNGTC 2 cut(s) 248, 380
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 359, 572, 1111
SatI GCNGC 3 cut(s) 166, 211, 474
Sau3AI GATC 8 cut(s) 256, 323, 413, 480, 485, 623, 689, 842
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 3 cut(s) 271, 813, 933
SetI ASST 9 cut(s) 90, 114, 242, 267, 728, 852, 930, 1004, 1094
SfaNI GCATC 1 cut(s) 309
SfuI TTCGAA 2 cut(s) 446, 512
Sse9I AATT 7 cut(s) 31, 295, 569, 735, 778, 944, 991
SsiI CCGC 4 cut(s) 188, 210, 404, 825
SspI AATATT 1 cut(s) 547
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 3 cut(s) 269, 811, 931
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 4 cut(s) 107, 452, 677, 796
TaiI ACGT 2 cut(s) 114, 930
TaqI TCGA 7 cut(s) 75, 350, 440, 446, 512, 692, 722
TasI AATT 7 cut(s) 31, 295, 569, 735, 778, 944, 991
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 3 cut(s) 359, 572, 1111
Tru9I TTAA 3 cut(s) 359, 572, 1111
TscAI CASTG 2 cut(s) 178, 511
TseFI GTSAC 5 cut(s) 107, 112, 242, 250, 1064
TseI GCWGC 2 cut(s) 165, 473
Tsp45I GTSAC 5 cut(s) 107, 112, 242, 250, 1064
TspGWI ACGGA 2 cut(s) 25, 573
TspRI CASTG 2 cut(s) 178, 511
Tth111I GACNNNGTC 2 cut(s) 248, 380
VspI ATTAAT 1 cut(s) 572
XagI CCTNNNNNAGG 1 cut(s) 961
XapI RAATTY 2 cut(s) 778, 944
XcmI CCANNNNNNNNNTGG 2 cut(s) 532, 1083
XmaJI CCTAGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.