Rw2G037060

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004838
Physical Location & Seq
Reverse (-)
61001618 .. 61002742
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037060.1

Sequence Viewer

Length: 972 bp
ATGGCTCCCTTTGTTGCAGAGAGTACCAGCAATTCCATTGGCACAAAAAAGAAAATCCTAGGCCGGAGAAAAGTCGAAATGAAGAAGGTAGAAGCACTTGACCACCGCCACGTCACTTTCTCCAAGCGCAAGAAAGGACTTTTCCAAAAAGCCGACCAACTCAGCAGCCTCACTGGCACCGAAATCGCGGTCGCGGTGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCGGCACCCCAAGCTGTGACGCCGTCACCGATCGTTACCTTGCCGGGTTTTCTTCTAACCAAAATGCCAATTGCATCAGTTGTCAAGACGATATTGGATCTATGAATGTGGAAAGCATTCCTTCGACGAGTTTAAACTGTTCCCAAAATGACAATGTCCATTATCAAAACAATGGCGCCGTAGTCGGATCTATGATAGATTCCCCCATTAGGGTTTTGGAGAAAAATATTTTGGATAACGGAAAGTTGGAATTAATGGCCCCTAATGGCAATGCCGATTATCAAAACGACAATACCGTCGTTGGACCTATAATCGTTGAAATCACGCCTTCCCGTTCAAACTTTCTCCAAAGCGACGGTGTAGTGGTCAGATCGAAGATAGTTGAAACGACTCCTTTGAGTTCGAGCTGTCCCGAAATTAGGGTTTTGGAGGACAATACAATGGGTGATGGATACTTGAATTTGATGAACGACACCGTTTTTCCTGTCAAGCCAGGCGATGGGGAGATGATTGAGGAGATGATGAAAGAGAAAGACGACGTGCCGGGTTGTAATGAATTCATGACTGCCTTGATTAGGGTTTTACTTCCAACGACGACTTCAAATTACTATACCTCATTGTTGGTTATGGAGGATGAAGATGAACTTCTTATGGAAAATAGAGGGCTGGGGACTTGTCACTTCAACCCATATGGGGATTGTAGGTGTGGTCGTGTGGAGGCATATGCGATTAATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

323

Amino Acids

35.29

Weight (kDa)

4.84

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 34 - 78 8.8e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AccB1I GGYRCC 3 cut(s) 176, 236, 407
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 2 cut(s) 188, 194
AciI CCGC 4 cut(s) 106, 188, 194, 216
AclWI GGATC 2 cut(s) 337, 427
AcsI RAATTY 2 cut(s) 691, 788
AcyI GRCGYC 2 cut(s) 252, 408
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 6 cut(s) 441, 442, 651, 731, 807, 925
AgsI TTSAA 6 cut(s) 551, 570, 617, 691, 834, 916
AjiI CACGTC 2 cut(s) 112, 772
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 4 cut(s) 446, 478, 814, 846
AluBI AGCT 2 cut(s) 246, 639
AluI AGCT 2 cut(s) 246, 639
AlwI GGATC 2 cut(s) 337, 427
AoxI GGCC 2 cut(s) 61, 489
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 691, 788
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AseI ATTAAT 2 cut(s) 485, 963
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 2 cut(s) 129, 410
AspS9I GGNCC 2 cut(s) 490, 536
AsuC2I CCSGG 2 cut(s) 277, 777
AsuHPI GGTGA 2 cut(s) 250, 689
AvaII GGWCC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 3 cut(s) 176, 236, 407
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 674, 725
BceAI ACGGC 2 cut(s) 239, 395
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 677
BcnI CCSGG 2 cut(s) 277, 777
BfaI CTAG 2 cut(s) 59, 970
BfoI RGCGCY 1 cut(s) 411
BfuI GTATCC 1 cut(s) 677
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 166, 217
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 2 cut(s) 167, 218
Bme1390I CCNGG 3 cut(s) 277, 726, 777
Bme18I GGWCC 1 cut(s) 536
BmgBI CACGTC 2 cut(s) 112, 772
BmgT120I GGNCC 2 cut(s) 490, 536
BmiI GGNNCC 5 cut(s) 6, 178, 238, 409, 492
BmrFI CCNGG 3 cut(s) 277, 726, 777
BmsI GCATC 1 cut(s) 315
BpuMI CCSGG 2 cut(s) 277, 777
BsaHI GRCGYC 2 cut(s) 252, 408
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 6 cut(s) 441, 442, 651, 731, 807, 925
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 871
BseLI CCNNNNNNNGG 6 cut(s) 441, 442, 651, 731, 807, 925
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 898
Bsh1236I CGCG 2 cut(s) 188, 194
Bsh1285I CGRYCG 2 cut(s) 192, 265
BshFI GGCC 2 cut(s) 63, 491
BshNI GGYRCC 3 cut(s) 176, 236, 407
BsiEI CGRYCG 2 cut(s) 192, 265
BsiSI CCGG 3 cut(s) 64, 276, 776
BslFI GGGAC 2 cut(s) 627, 916
BslI CCNNNNNNNGG 6 cut(s) 441, 442, 651, 731, 807, 925
BsmFI GGGAC 2 cut(s) 627, 916
BsmI GAATGC 2 cut(s) 218, 348
BsnI GGCC 2 cut(s) 63, 491
Bsp143I GATC 4 cut(s) 262, 329, 419, 602
BspACI CCGC 4 cut(s) 106, 188, 194, 216
BspANI GGCC 2 cut(s) 63, 491
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 2 cut(s) 188, 194
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 5 cut(s) 6, 178, 238, 409, 492
BspPI GGATC 2 cut(s) 337, 427
BspT107I GGYRCC 3 cut(s) 176, 236, 407
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 4 cut(s) 262, 329, 419, 602
BssNI GRCGYC 2 cut(s) 252, 408
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 4 cut(s) 371, 529, 590, 709
BstACI GRCGYC 2 cut(s) 252, 408
BstDEI CTNAG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 805
BstF5I GGATG 1 cut(s) 871
BstFNI CGCG 2 cut(s) 188, 194
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 129, 410
BstKTI GATC 4 cut(s) 265, 332, 422, 605
BstMBI GATC 4 cut(s) 262, 329, 419, 602
BstMCI CGRYCG 2 cut(s) 192, 265
BstMWI GCNNNNNNNGC 2 cut(s) 174, 243
BstNI CCWGG 1 cut(s) 726
BstSCI CCNGG 3 cut(s) 275, 724, 775
BstUI CGCG 2 cut(s) 188, 194
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 329, 419
BstYI RGATCY 2 cut(s) 329, 419
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 2 cut(s) 63, 491
BtgZI GCGATG 1 cut(s) 744
BtrI CACGTC 2 cut(s) 112, 772
BtsCI GGATG 1 cut(s) 871
BtsIMutI CAGTG 1 cut(s) 171
CciI TCATGA 1 cut(s) 792
CfoI GCGC 2 cut(s) 129, 410
Cfr13I GGNCC 2 cut(s) 490, 536
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 793
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 161
DinI GGCGCC 1 cut(s) 409
DpnI GATC 4 cut(s) 264, 331, 421, 604
DpnII GATC 4 cut(s) 262, 329, 419, 602
DraI TTTAAA 1 cut(s) 366
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 796
FalI AAGNNNNNCTT 4 cut(s) 337, 369, 861, 893
FaqI GGGAC 2 cut(s) 627, 916
FatI CATG 1 cut(s) 792
FauNDI CATATG 2 cut(s) 922, 955
Fnu4HI GCNGC 2 cut(s) 166, 217
FokI GGATG 1 cut(s) 878
Fsp4HI GCNGC 2 cut(s) 166, 217
FspBI CTAG 2 cut(s) 59, 970
GlaI GCGC 2 cut(s) 128, 409
GluI GCNGC 2 cut(s) 166, 217
GsaI CCCAGC 1 cut(s) 902
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 2 cut(s) 63, 491
HapII CCGG 3 cut(s) 64, 276, 776
HgaI GACGC 1 cut(s) 260
HhaI GCGC 2 cut(s) 129, 410
Hin1I GRCGYC 2 cut(s) 252, 408
Hin1II CATG 1 cut(s) 796
Hin6I GCGC 2 cut(s) 127, 408
HinP1I GCGC 2 cut(s) 127, 408
HinfI GANTC 2 cut(s) 431, 622
HpaII CCGG 3 cut(s) 64, 276, 776
HphI GGTGA 2 cut(s) 250, 689
Hpy188I TCNGA 3 cut(s) 211, 419, 602
Hpy188III TCNNGA 3 cut(s) 317, 644, 793
Hpy99I CGWCG 5 cut(s) 361, 533, 590, 773, 829
HpyAV CCTTC 3 cut(s) 79, 363, 570
HpyCH4III ACNGT 4 cut(s) 371, 529, 590, 709
HpyCH4IV ACGT 2 cut(s) 111, 771
HpyCH4V TGCA 2 cut(s) 17, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 243
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 2 cut(s) 111, 771
Hsp92I GRCGYC 2 cut(s) 252, 408
Hsp92II CATG 1 cut(s) 796
HspAI GCGC 2 cut(s) 127, 408
KasI GGCGCC 1 cut(s) 407
Kzo9I GATC 4 cut(s) 262, 329, 419, 602
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 315
MaeI CTAG 2 cut(s) 59, 970
MaeII ACGT 2 cut(s) 111, 771
MaeIII GTNAC 5 cut(s) 112, 248, 256, 266, 908
MalI GATC 4 cut(s) 264, 331, 421, 604
MboI GATC 4 cut(s) 262, 329, 419, 602
MboII GAAGA 4 cut(s) 94, 276, 619, 881
MfeI CAATTG 1 cut(s) 301
MflI RGATCY 2 cut(s) 329, 419
MluCI AATT 7 cut(s) 31, 301, 482, 648, 691, 788, 835
Mly113I GGCGCC 1 cut(s) 408
MlyI GAGTC 1 cut(s) 616
MmeI TCCRAC 4 cut(s) 397, 459, 514, 845
MnlI CCTC 7 cut(s) 179, 655, 739, 856, 856, 887, 943
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 3 cut(s) 365, 485, 963
MspI CCGG 3 cut(s) 64, 276, 776
MspR9I CCNGG 3 cut(s) 277, 726, 777
MssI GTTTAAAC 1 cut(s) 366
MunI CAATTG 1 cut(s) 301
Mva1269I GAATGC 2 cut(s) 218, 348
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 2 cut(s) 188, 194
MwoI GCNNNNNNNGC 2 cut(s) 174, 243
NarI GGCGCC 1 cut(s) 408
NciI CCSGG 2 cut(s) 277, 777
NdeI CATATG 2 cut(s) 922, 955
NdeII GATC 4 cut(s) 262, 329, 419, 602
NlaIII CATG 1 cut(s) 796
NlaIV GGNNCC 5 cut(s) 6, 178, 238, 409, 492
NmuCI GTSAC 4 cut(s) 112, 248, 256, 908
PagI TCATGA 1 cut(s) 792
PcsI WCGNNNNNNNCGW 4 cut(s) 198, 207, 258, 525
PctI GAATGC 2 cut(s) 218, 348
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 431
PflFI GACNNNGTC 2 cut(s) 254, 386
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 2 cut(s) 167, 218
Ple19I CGATCG 1 cut(s) 265
PleI GAGTC 1 cut(s) 616
PluTI GGCGCC 1 cut(s) 411
PmeI GTTTAAAC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 616
PshBI ATTAAT 2 cut(s) 485, 963
Psp6I CCWGG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 898
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 5 cut(s) 6, 178, 238, 409, 492
PspPI GGNCC 2 cut(s) 490, 536
PsuI RGATCY 2 cut(s) 329, 419
PsyI GACNNNGTC 2 cut(s) 254, 386
PvuI CGATCG 1 cut(s) 265
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 365, 485, 963
SatI GCNGC 2 cut(s) 166, 217
Sau3AI GATC 4 cut(s) 262, 329, 419, 602
Sau96I GGNCC 2 cut(s) 490, 536
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 3 cut(s) 277, 726, 777
SetI ASST 9 cut(s) 90, 114, 248, 273, 541, 641, 774, 848, 938
SfaNI GCATC 1 cut(s) 315
SfoI GGCGCC 1 cut(s) 409
SinI GGWCC 1 cut(s) 536
Sse9I AATT 7 cut(s) 31, 301, 482, 648, 691, 788, 835
SsiI CCGC 4 cut(s) 106, 188, 194, 216
SspDI GGCGCC 1 cut(s) 407
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 59, 970
StyD4I CCNGG 3 cut(s) 275, 724, 775
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 4 cut(s) 371, 529, 590, 709
TaiI ACGT 2 cut(s) 114, 774
TaqI TCGA 4 cut(s) 75, 356, 605, 635
TasI AATT 7 cut(s) 31, 301, 482, 648, 691, 788, 835
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 365, 485, 963
Tru9I TTAA 3 cut(s) 365, 485, 963
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 4 cut(s) 112, 248, 256, 908
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 4 cut(s) 112, 248, 256, 908
TspDTI ATGAA 8 cut(s) 95, 350, 713, 770, 781, 801, 882, 888
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 2 cut(s) 254, 386
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 536
VspI ATTAAT 2 cut(s) 485, 963
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 2 cut(s) 691, 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmaJI CCTAGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 59, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.