Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0004838

Physical Location & Seq

Genomic Coordinates Forward (+)

63397 .. 64095

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000308.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggctgaaccaaacaataacaatgtactgctttcccctgtggatgaatcgaataataacaatgtactgccaccgccggtgaagaaaaccaaaggccgaagaagggtggaaatcaagaaggtggaagcagccagcaaccgccatgtcaccttctcgaagcgcaagaagggccttttcaacaaggcagccgaactgagcctcttgaccggcgcagaaaccgcagcgatagtagtctccggcaatggcaggatgttcggtttcggcagctccagttgcgacgccgtcatccaccgttaccttgcagagagcaaccctcaagcagcaagagagccggatcgtcgcaacaaaaacgacgccgtgaactcggccaatttggcaaagctgaggcagcagttattagaggcccggaggcagctggaggaggagaagaagctggcggtgatgatacagcagaggaaacaggtggcggcagtggcaggacctgccgagttgtggtgggaggaggagatgatagatcaaaatccgaaggagttggagagttactctgaggcgttgcataggctgaagagtgatgtggagaggagagctcagcagaagattatgaatcttccatgccgctatacgtcgctaatggatggtagagttgtcatgggtgagaattttatgaacaataataataccaatatgaacaatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

232

Amino Acids

26.17

Weight (kDa)

9.56

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25061 FvH4_6g35390 FvH4_6g35690
malus_domestica	MD09G1170500.v1.1 MD09G1176200.v1.1 MD17G1150800.v1.1
prunus_persica	Prupe.3G032000_v2.0.a1 Prupe.3G035200_v2.0.a1
pyrus_communis	pycom09g09140 pycom17g14390
rosa_chinensis	RchiOBHm_Chr2g0147681
rosa_laevigata	RLG00000020226 RLG00000020270
rosa_multiflora	Rmu_sc0000308.1_g000012 Rmu_sc0000566.1_g000017
rosa_roxburghii	Rroxscaffold_2G00099390 Rroxscaffold_2G00099860
rosa_rugosa	Rorug02G0397400 Rorug02G0400800
rosa_samantha	Rh2AG453800 Rh2AG453900 Rh2AG458200 Rh2BG466600 Rh2BG470900 Rh2CG440900 Rh2CG441000 Rh2CG445600 Rh2DG475500 Rh2DG480200
rosa_wichuraiana	Rw0G022040 Rw2G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AciI	CCGC	6 cut(s)	74, 139, 219, 437, 467, 616
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	2 cut(s)	279, 354
AfaI	GTAC	2 cut(s)	27, 66
AfiI	CCNNNNNNNGG	2 cut(s)	103, 492
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	5 cut(s)	267, 382, 415, 433, 587
AluI	AGCT	5 cut(s)	267, 382, 415, 433, 587
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	342
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	4 cut(s)	94, 169, 366, 402
ApeKI	GCWGC	7 cut(s)	128, 185, 221, 264, 320, 388, 412
ApoI	RAATTY	1 cut(s)	658
AspLEI	GCGC	2 cut(s)	162, 212
AspS9I	GGNCC	3 cut(s)	169, 403, 479
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	4 cut(s)	91, 139, 451, 665
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	589
BbvCI	CCTCAGC	1 cut(s)	383
BbvI	GCAGC	7 cut(s)	140, 197, 233, 276, 332, 400, 424
BccI	CCATC	1 cut(s)	629
BceAI	ACGGC	2 cut(s)	266, 341
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	9 cut(s)	129, 186, 222, 265, 321, 389, 413, 468, 616
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	9 cut(s)	130, 187, 223, 266, 322, 390, 414, 469, 617
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	169, 403, 479
BmrFI	CCNGG	1 cut(s)	406
BplI	GAGNNNNNCTC	6 cut(s)	298, 330, 527, 559, 571, 603
BpmI	CTGGAG	2 cut(s)	253, 437
Bpu10I	CCTNAGC	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	2 cut(s)	279, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 492
Bse118I	RCCGGY	2 cut(s)	76, 206
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	519
BseGI	GGATG	4 cut(s)	49, 255, 285, 640
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	103, 492
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	4 cut(s)	185, 374, 537, 602
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	5 cut(s)	434, 437, 515, 518, 595
BseXI	GCAGC	7 cut(s)	140, 197, 233, 276, 332, 400, 424
BshFI	GGCC	4 cut(s)	96, 171, 368, 404
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	5 cut(s)	77, 207, 237, 332, 406
BslI	CCNNNNNNNGG	2 cut(s)	103, 492
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	96, 171, 368, 404
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	334, 514
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	6 cut(s)	74, 139, 219, 437, 467, 616
BspANI	GGCC	4 cut(s)	96, 171, 368, 404
BspCNI	CTCAG	4 cut(s)	186, 375, 538, 601
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	2 cut(s)	76, 206
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	2 cut(s)	76, 206
BssMI	GATC	2 cut(s)	334, 514
BssNI	GRCGYC	2 cut(s)	279, 354
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	560
BstACI	GRCGYC	2 cut(s)	279, 354
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	133, 435
BstDEI	CTNAG	4 cut(s)	194, 383, 546, 588
BstF5I	GGATG	4 cut(s)	49, 255, 285, 640
BstHHI	GCGC	2 cut(s)	162, 212
BstKTI	GATC	2 cut(s)	337, 517
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	334, 514
BstMWI	GCNNNNNNNGC	7 cut(s)	168, 218, 273, 374, 388, 473, 482
BstSCI	CCNGG	1 cut(s)	404
BstV1I	GCAGC	7 cut(s)	140, 197, 233, 276, 332, 400, 424
BsuRI	GGCC	4 cut(s)	96, 171, 368, 404
BtsCI	GGATG	4 cut(s)	49, 255, 285, 640
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	133, 435
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	2 cut(s)	162, 212
Cfr10I	RCCGGY	2 cut(s)	76, 206
Cfr13I	GGNCC	3 cut(s)	169, 403, 479
CseI	GACGC	2 cut(s)	287, 362
Csp6I	GTAC	2 cut(s)	26, 65
CviAII	CATG	3 cut(s)	143, 612, 649
CviQI	GTAC	2 cut(s)	26, 65
DdeI	CTNAG	4 cut(s)	194, 383, 546, 588
DpnI	GATC	2 cut(s)	336, 516
DpnII	GATC	2 cut(s)	334, 514
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Ecl136II	GAGCTC	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	587
EcoO109I	RGGNCCY	2 cut(s)	169, 479
EcoT38I	GRGCYC	1 cut(s)	589
FaeI	CATG	3 cut(s)	146, 615, 652
FaiI	YATR	9 cut(s)	144, 558, 602, 613, 621, 650, 665, 686, 695
FatI	CATG	3 cut(s)	142, 611, 648
Fnu4HI	GCNGC	9 cut(s)	129, 186, 222, 265, 321, 389, 413, 468, 616
FokI	GGATG	4 cut(s)	56, 262, 272, 647
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	9 cut(s)	129, 186, 222, 265, 321, 389, 413, 468, 616
GlaI	GCGC	2 cut(s)	161, 211
GluI	GCNGC	9 cut(s)	129, 186, 222, 265, 321, 389, 413, 468, 616
GsuI	CTGGAG	2 cut(s)	253, 437
HaeIII	GGCC	4 cut(s)	96, 171, 368, 404
HapII	CCGG	5 cut(s)	77, 207, 237, 332, 406
HgaI	GACGC	2 cut(s)	287, 362
HhaI	GCGC	2 cut(s)	162, 212
Hin1I	GRCGYC	2 cut(s)	279, 354
Hin1II	CATG	3 cut(s)	146, 615, 652
Hin6I	GCGC	2 cut(s)	160, 210
HinP1I	GCGC	2 cut(s)	160, 210
HinfI	GANTC	2 cut(s)	47, 604
HpaII	CCGG	5 cut(s)	77, 207, 237, 332, 406
HphI	GGTGA	4 cut(s)	91, 139, 451, 665
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	525, 547
Hpy188III	TCNNGA	3 cut(s)	115, 154, 202
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	4 cut(s)	281, 342, 356, 628
HpyAV	CCTTC	5 cut(s)	96, 112, 160, 160, 520
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	2 cut(s)	302, 556
HpyF10VI	GCNNNNNNNGC	7 cut(s)	168, 218, 273, 374, 388, 473, 482
HpyF3I	CTNAG	4 cut(s)	194, 383, 546, 588
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	2 cut(s)	279, 354
Hsp92II	CATG	3 cut(s)	146, 615, 652
HspAI	GCGC	2 cut(s)	160, 210
Kzo9I	GATC	2 cut(s)	334, 514
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	7 cut(s)	140, 197, 233, 276, 332, 400, 424
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	3 cut(s)	145, 293, 539
MalI	GATC	2 cut(s)	336, 516
MboI	GATC	2 cut(s)	334, 514
MboII	GAAGA	6 cut(s)	94, 111, 439, 577, 599, 607
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	2 cut(s)	370, 658
MmeI	TCCRAC	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	5 cut(s)	77, 207, 237, 332, 406
MspR9I	CCNGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	7 cut(s)	168, 218, 273, 374, 388, 473, 482
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	334, 514
NlaIII	CATG	3 cut(s)	146, 615, 652
NmeAIII	GCCGAG	2 cut(s)	344, 511
NmuCI	GTSAC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	47, 604
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	9 cut(s)	130, 187, 223, 266, 322, 390, 414, 469, 617
PpuMI	RGGWCCY	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	589
Psp5II	RGGWCCY	1 cut(s)	479
PspPI	GGNCC	3 cut(s)	169, 403, 479
PspPPI	RGGWCCY	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	27, 66
RsaNI	GTAC	2 cut(s)	26, 65
SacI	GAGCTC	1 cut(s)	589
SatI	GCNGC	9 cut(s)	129, 186, 222, 265, 321, 389, 413, 468, 616
Sau3AI	GATC	2 cut(s)	334, 514
Sau96I	GGNCC	3 cut(s)	169, 403, 479
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	589
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	370, 658
SsiI	CCGC	6 cut(s)	74, 139, 219, 437, 467, 616
SstI	GAGCTC	1 cut(s)	589
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	2 cut(s)	50, 155
TasI	AATT	2 cut(s)	370, 658
TatI	WGTACW	2 cut(s)	25, 64
TauI	GCSGC	2 cut(s)	470, 618
TfiI	GAWTC	2 cut(s)	47, 604
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	7 cut(s)	128, 185, 221, 264, 320, 388, 412
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	60, 617, 680
TspRI	CASTG	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.