RLG00000020270

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004838
Physical Location & Seq
Forward (+)
63100554 .. 63101252
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020270

Sequence Viewer

Length: 699 bp
ATGGCTGAACCAAACAATAACAATGTACTGCTTTCCCCTGTGGATGAATCGAATAATAACAATGTACTGCCACCGCCGGTGAAGAAAACCAAAGGCCGAAGAAGGGTGGAAATCAAGAAGGTGGAAGCAGCCAGCAACCGCCATGTCACCTTCTCGAAGCGCAAGAAGGGCCTTTTCAACAAGGCAGCCGAACTGAGCCTCTTGACCGGCGCAGAAACCGCAGCGATAGTAGTCTCCGGCAATGGCAGGATGTTCGGTTTCGGCAGCTCCAGTTGCGACGCTGTCATCCACCGTTACCTTGCAGAGAGCAATCCTCAAGCAGCAAGAGAGCCGGATCGTCGCAACAAAAACGACGCCGTGAACTCGGCCAATGTGGCAAAGCTGAGGCAGCAGTTATTAGAGGCCCGGAGGCAGCTGGAGGAGGAGAAGAAGCTGGCAGTGATGATACAGCAGAGGAAACAGGTGGCGGCAGTGGCGGGACCTGCCGAGTTGTGGTGGGAGGAGGAGATGATAGATCAAAATCCGAAGGAGTTGGAGAGCTACTCTGAGGCGTTGCATAGGCTGAAGAGTGATGTGGAGAGGAGAGCTCAGCAGAAGATTATGAATCTTCCATGCAGCTATACGTCGCTAATGGATGGTAGAGTTGTCATGGGTGAGAATTTTATGAACAATAATAATACCAATATGAACAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

233

Amino Acids

26.09

Weight (kDa)

9.46

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 40 - 87 5.9e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AciI CCGC 5 cut(s) 74, 139, 219, 467, 476
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 2 cut(s) 27, 66
AfiI CCNNNNNNNGG 2 cut(s) 103, 492
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 7 cut(s) 267, 382, 415, 433, 540, 587, 618
AluI AGCT 7 cut(s) 267, 382, 415, 433, 540, 587, 618
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 342
AoxI GGCC 4 cut(s) 94, 169, 366, 402
ApeKI GCWGC 8 cut(s) 128, 185, 221, 264, 320, 388, 412, 615
ApoI RAATTY 1 cut(s) 658
AspLEI GCGC 2 cut(s) 162, 212
AspS9I GGNCC 3 cut(s) 169, 403, 479
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 91, 139, 665
AvaII GGWCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 589
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 8 cut(s) 140, 197, 233, 276, 332, 400, 424, 627
BccI CCATC 1 cut(s) 629
BceAI ACGGC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 490
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 616
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 9 cut(s) 130, 187, 223, 266, 322, 390, 414, 469, 617
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 3 cut(s) 169, 403, 479
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 406
BplI GAGNNNNNCTC 6 cut(s) 298, 330, 527, 559, 571, 603
BpmI CTGGAG 2 cut(s) 253, 437
Bpu10I CCTNAGC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 492
Bse118I RCCGGY 2 cut(s) 76, 206
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 519
BseGI GGATG 4 cut(s) 49, 255, 285, 640
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 103, 492
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 4 cut(s) 185, 374, 537, 602
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 5 cut(s) 434, 437, 515, 518, 595
BseXI GCAGC 8 cut(s) 140, 197, 233, 276, 332, 400, 424, 627
BshFI GGCC 4 cut(s) 96, 171, 368, 404
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 5 cut(s) 77, 207, 237, 332, 406
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 103, 492
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 492
BsnI GGCC 4 cut(s) 96, 171, 368, 404
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 2 cut(s) 334, 514
Bsp1720I GCTNAGC 1 cut(s) 588
BspACI CCGC 5 cut(s) 74, 139, 219, 467, 476
BspANI GGCC 4 cut(s) 96, 171, 368, 404
BspCNI CTCAG 4 cut(s) 186, 375, 538, 601
BspLI GGNNCC 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 2 cut(s) 76, 206
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 2 cut(s) 76, 206
BssMI GATC 2 cut(s) 334, 514
BssNI GRCGYC 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 133, 435
BstDEI CTNAG 4 cut(s) 194, 383, 546, 588
BstF5I GGATG 4 cut(s) 49, 255, 285, 640
BstHHI GCGC 2 cut(s) 162, 212
BstKTI GATC 2 cut(s) 337, 517
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 334, 514
BstMWI GCNNNNNNNGC 7 cut(s) 168, 218, 273, 374, 388, 473, 482
BstSCI CCNGG 1 cut(s) 404
BstV1I GCAGC 8 cut(s) 140, 197, 233, 276, 332, 400, 424, 627
BsuRI GGCC 4 cut(s) 96, 171, 368, 404
BtsCI GGATG 4 cut(s) 49, 255, 285, 640
BtsI GCAGTG 2 cut(s) 444, 477
BtsIMutI CAGTG 2 cut(s) 444, 477
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 133, 435
CfoI GCGC 2 cut(s) 162, 212
Cfr10I RCCGGY 2 cut(s) 76, 206
Cfr13I GGNCC 3 cut(s) 169, 403, 479
CseI GACGC 2 cut(s) 287, 362
Csp6I GTAC 2 cut(s) 26, 65
CviAII CATG 3 cut(s) 143, 612, 649
CviQI GTAC 2 cut(s) 26, 65
DdeI CTNAG 4 cut(s) 194, 383, 546, 588
DpnI GATC 2 cut(s) 336, 516
DpnII GATC 2 cut(s) 334, 514
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Ecl136II GAGCTC 1 cut(s) 587
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 587
EcoO109I RGGNCCY 2 cut(s) 169, 479
EcoT38I GRGCYC 1 cut(s) 589
FaeI CATG 3 cut(s) 146, 615, 652
FaiI YATR 9 cut(s) 144, 558, 602, 613, 621, 650, 665, 686, 695
FaqI GGGAC 1 cut(s) 492
FatI CATG 3 cut(s) 142, 611, 648
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 616
FokI GGATG 4 cut(s) 56, 262, 272, 647
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 616
GlaI GCGC 2 cut(s) 161, 211
GluI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 616
GsuI CTGGAG 2 cut(s) 253, 437
HaeIII GGCC 4 cut(s) 96, 171, 368, 404
HapII CCGG 5 cut(s) 77, 207, 237, 332, 406
HgaI GACGC 2 cut(s) 287, 362
HhaI GCGC 2 cut(s) 162, 212
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 3 cut(s) 146, 615, 652
Hin6I GCGC 2 cut(s) 160, 210
HinP1I GCGC 2 cut(s) 160, 210
HinfI GANTC 2 cut(s) 47, 604
HpaII CCGG 5 cut(s) 77, 207, 237, 332, 406
HphI GGTGA 3 cut(s) 91, 139, 665
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 525, 547
Hpy188III TCNNGA 3 cut(s) 115, 154, 202
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 4 cut(s) 281, 342, 356, 628
HpyAV CCTTC 5 cut(s) 96, 112, 160, 160, 520
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 3 cut(s) 302, 556, 615
HpyF10VI GCNNNNNNNGC 7 cut(s) 168, 218, 273, 374, 388, 473, 482
HpyF3I CTNAG 4 cut(s) 194, 383, 546, 588
HpySE526I ACGT 1 cut(s) 623
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 3 cut(s) 146, 615, 652
HspAI GCGC 2 cut(s) 160, 210
Kzo9I GATC 2 cut(s) 334, 514
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 8 cut(s) 140, 197, 233, 276, 332, 400, 424, 627
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 2 cut(s) 145, 293
MalI GATC 2 cut(s) 336, 516
MboI GATC 2 cut(s) 334, 514
MboII GAAGA 6 cut(s) 94, 111, 439, 577, 599, 607
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 1 cut(s) 658
MmeI TCCRAC 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 5 cut(s) 77, 207, 237, 332, 406
MspR9I CCNGG 1 cut(s) 406
MwoI GCNNNNNNNGC 7 cut(s) 168, 218, 273, 374, 388, 473, 482
NciI CCSGG 1 cut(s) 406
NdeII GATC 2 cut(s) 334, 514
NlaIII CATG 3 cut(s) 146, 615, 652
NlaIV GGNNCC 1 cut(s) 480
NmeAIII GCCGAG 2 cut(s) 344, 511
NmuCI GTSAC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 47, 604
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 9 cut(s) 130, 187, 223, 266, 322, 390, 414, 469, 617
PpuMI RGGWCCY 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 3 cut(s) 169, 403, 479
PspPPI RGGWCCY 1 cut(s) 479
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 27, 66
RsaNI GTAC 2 cut(s) 26, 65
SacI GAGCTC 1 cut(s) 589
SatI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 616
Sau3AI GATC 2 cut(s) 334, 514
Sau96I GGNCC 3 cut(s) 169, 403, 479
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 1 cut(s) 589
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 1 cut(s) 658
SsiI CCGC 5 cut(s) 74, 139, 219, 467, 476
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 626
TaqI TCGA 2 cut(s) 50, 155
TasI AATT 1 cut(s) 658
TatI WGTACW 2 cut(s) 25, 64
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 2 cut(s) 47, 604
TscAI CASTG 2 cut(s) 444, 477
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 8 cut(s) 128, 185, 221, 264, 320, 388, 412, 615
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 60, 617, 680
TspRI CASTG 2 cut(s) 444, 477
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.