Rorug02G0397400

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004838
Physical Location & Seq
Reverse (-)
50773530 .. 50774936
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0397400.1

Sequence Viewer

Length: 930 bp
ATGGAGGCTCAAGACGGTGCGGTCACCATCTACAACAGCGGCGCAGTCGCCGACCCCAAGATAAAGAACCCCTACAGCCTCAAGGTCGGCCTCGCCCAGATGCTCCGCGGCGGCGCCATCGTCGAAGTCACCAACCCCGATCAAGCCAAGCTCGCCGAGGAGGCCGGCGCCTGCTCCGTAATCGTCTCCGACCCGCCCCACTCCTCCCGAGGCGGCATTCTCCGCATGTCCGATCCCTCCCTCGTCAAGGACATCAAACGCGCCGTTTCGATCCCCGTCATGGCCAGATCCCGGGTCGGCCATTTCGTCGAGGCCCAGATCCTCGAAGCCATCGGCGTGGACTACGTCGACGAGAGCGAGTACCTCGCCTTCGCCGACGAGGATCATTACATCAACAAGCACAATTTCCGGTGCCCCTTCGTCTGCGGCGCCGAGACACTCGGCGACGCGTTGAGGAGAATCAGAGAAGGGGCCGCGGTTATTCGGACCCAAGGGGATCTATCCGGGTCGGGCAATGTGGCCCAGACGGTTCGGAACGTCCGGTCTATTATGGGGCAGATAAGGATGCTTAACAACATGGACGACGACGAAGTCTTCAAGTTTTCCAAGAGCATTGCAGCGCCGTATGACCTTGTGGCGCAGACCAAGCAAATGGGCCGGCTGCCGGTGGTCCAATTCGCCTCCGGAGGCATTGTGACGCCGGCTGACGTGGGGCTGATGATGCAATTAGGCTGTGATGGAGTGTTTATTGGGTCGGATGTTTTCGGGTCACCGGATCCGTATAAGCGCGTGAGGGGCATTGTTGATGCTGTGGGGAACTATAATGACCCGGATGTGCTTGTGGAGACGAGCTCCGGGTTGGCGGGTCTGATGGCGGGTATGAGTCTCGGTGAGGACAGAATCGAAGGGTTTGTGCGCGGAGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

309

Amino Acids

32.94

Weight (kDa)

5.03

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 26 - 227 4.8e-87 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 20, 590
AccB1I GGYRCC 4 cut(s) 113, 167, 411, 428
AccI GTMKAC 1 cut(s) 348
AccII CGCG 6 cut(s) 108, 261, 449, 476, 789, 918
AccIII TCCGGA 1 cut(s) 683
AclWI GGATC 8 cut(s) 227, 265, 282, 313, 390, 504, 770, 783
AcoI YGGCCR 2 cut(s) 282, 298
AcyI GRCGYC 4 cut(s) 114, 168, 429, 698
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 4 cut(s) 247, 280, 291, 664
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 1 cut(s) 598
AjiI CACGTC 1 cut(s) 709
AluBI AGCT 2 cut(s) 151, 852
AluI AGCT 2 cut(s) 151, 852
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 4 cut(s) 190, 428, 839, 890
AlwI GGATC 8 cut(s) 227, 265, 282, 313, 390, 504, 770, 783
Ama87I CYCGRG 2 cut(s) 207, 291
Aor13HI TCCGGA 1 cut(s) 683
AoxI GGCC 8 cut(s) 88, 162, 282, 298, 312, 471, 519, 655
ApeKI GCWGC 2 cut(s) 617, 661
AspLEI GCGC 9 cut(s) 44, 116, 170, 263, 431, 622, 640, 789, 918
AspS9I GGNCC 6 cut(s) 313, 471, 486, 520, 655, 670
AsuC2I CCSGG 5 cut(s) 292, 293, 505, 830, 856
AsuHPI GGTGA 4 cut(s) 16, 121, 762, 902
AvaI CYCGRG 2 cut(s) 207, 291
AvaII GGWCC 2 cut(s) 486, 670
BaeGI GKGCMC 1 cut(s) 416
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 775
BanI GGYRCC 4 cut(s) 113, 167, 411, 428
BanII GRGCYC 1 cut(s) 854
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 2 cut(s) 629, 648
BccI CCATC 5 cut(s) 35, 125, 338, 731, 865
BceAI ACGGC 2 cut(s) 248, 607
BcnI CCSGG 5 cut(s) 292, 293, 505, 830, 856
BcoDI GTCTC 4 cut(s) 190, 428, 839, 890
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 4 cut(s) 117, 171, 432, 623
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 8 cut(s) 40, 109, 112, 214, 427, 474, 618, 662
BlsI GCNGC 8 cut(s) 41, 110, 113, 215, 428, 475, 619, 663
Bme1390I CCNGG 5 cut(s) 292, 293, 505, 830, 856
Bme18I GGWCC 2 cut(s) 486, 670
BmeT110I CYCGRG 2 cut(s) 207, 291
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 6 cut(s) 313, 471, 486, 520, 655, 670
BmiI GGNNCC 7 cut(s) 115, 169, 413, 430, 472, 488, 777
BmrFI CCNGG 5 cut(s) 292, 293, 505, 830, 856
BmsI GCATC 4 cut(s) 90, 555, 711, 796
BpiI GAAGAC 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 836, 868
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 5 cut(s) 292, 293, 505, 830, 856
BsaHI GRCGYC 4 cut(s) 114, 168, 429, 698
BsaJI CCNNGG 6 cut(s) 106, 156, 208, 291, 474, 490
BsaWI WCCGGW 4 cut(s) 408, 540, 683, 772
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 280, 291, 664
Bse118I RCCGGY 4 cut(s) 164, 657, 664, 700
Bse3DI GCAATG 2 cut(s) 520, 612
BseAI TCCGGA 1 cut(s) 683
BseDI CCNNGG 6 cut(s) 106, 156, 208, 291, 474, 490
BseGI GGATG 3 cut(s) 570, 763, 838
BseLI CCNNNNNNNGG 4 cut(s) 247, 280, 291, 664
BseMI GCAATG 2 cut(s) 520, 612
BseRI GAGGAG 3 cut(s) 173, 193, 469
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 629, 648
Bsh1236I CGCG 6 cut(s) 108, 261, 449, 476, 789, 918
BshFI GGCC 8 cut(s) 90, 164, 284, 300, 314, 473, 521, 657
BshNI GGYRCC 4 cut(s) 113, 167, 411, 428
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 2 cut(s) 207, 291
BslI CCNNNNNNNGG 4 cut(s) 247, 280, 291, 664
BsmAI GTCTC 4 cut(s) 190, 428, 839, 890
BsmBI CGTCTC 2 cut(s) 190, 839
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 8 cut(s) 90, 164, 284, 300, 314, 473, 521, 657
BsoBI CYCGRG 2 cut(s) 207, 291
Bsp1286I GDGCHC 2 cut(s) 416, 854
Bsp13I TCCGGA 1 cut(s) 683
Bsp143I GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
BspANI GGCC 8 cut(s) 90, 164, 284, 300, 314, 473, 521, 657
BspEI TCCGGA 1 cut(s) 683
BspFNI CGCG 6 cut(s) 108, 261, 449, 476, 789, 918
BspLI GGNNCC 7 cut(s) 115, 169, 413, 430, 472, 488, 777
BspPI GGATC 8 cut(s) 227, 265, 282, 313, 390, 504, 770, 783
BspT107I GGYRCC 4 cut(s) 113, 167, 411, 428
BsrDI GCAATG 2 cut(s) 520, 612
BsrFI RCCGGY 4 cut(s) 164, 657, 664, 700
BssAI RCCGGY 4 cut(s) 164, 657, 664, 700
BssECI CCNNGG 6 cut(s) 106, 156, 208, 291, 474, 490
BssMI GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
BssNI GRCGYC 4 cut(s) 114, 168, 429, 698
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 17, 529
BstACI GRCGYC 4 cut(s) 114, 168, 429, 698
BstC8I GCNNGC 5 cut(s) 153, 166, 172, 659, 702
BstDSI CCRYGG 2 cut(s) 106, 474
BstEII GGTNACC 2 cut(s) 22, 768
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 570, 763, 838
BstFNI CGCG 6 cut(s) 108, 261, 449, 476, 789, 918
BstH2I RGCGCY 4 cut(s) 117, 171, 432, 623
BstHHI GCGC 9 cut(s) 44, 116, 170, 263, 431, 622, 640, 789, 918
BstKTI GATC 8 cut(s) 142, 235, 273, 290, 321, 385, 499, 778
BstMAI GTCTC 4 cut(s) 190, 428, 839, 890
BstMBI GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
BstMWI GCNNNNNNNGC 6 cut(s) 152, 161, 222, 646, 721, 795
BstNSI RCATGY 1 cut(s) 229
BstPI GGTNACC 2 cut(s) 22, 768
BstSCI CCNGG 5 cut(s) 290, 291, 503, 828, 854
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 6 cut(s) 108, 261, 449, 476, 789, 918
BstV1I GCAGC 2 cut(s) 629, 648
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 4 cut(s) 287, 318, 496, 775
BstXI CCANNNNNNTGG 2 cut(s) 337, 652
BstYI RGATCY 4 cut(s) 287, 318, 496, 775
BsuRI GGCC 8 cut(s) 90, 164, 284, 300, 314, 473, 521, 657
BtgI CCRYGG 2 cut(s) 106, 474
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 3 cut(s) 570, 763, 838
Cac8I GCNNGC 5 cut(s) 153, 166, 172, 659, 702
CfoI GCGC 9 cut(s) 44, 116, 170, 263, 431, 622, 640, 789, 918
Cfr10I RCCGGY 4 cut(s) 164, 657, 664, 700
Cfr13I GGNCC 6 cut(s) 313, 471, 486, 520, 655, 670
Cfr42I CCGCGG 2 cut(s) 109, 477
Cfr9I CCCGGG 1 cut(s) 291
CseI GACGC 2 cut(s) 455, 706
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 226, 280, 577
CviQI GTAC 1 cut(s) 361
DinI GGCGCC 3 cut(s) 115, 169, 430
DpnI GATC 8 cut(s) 141, 234, 272, 289, 320, 384, 498, 777
DpnII GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
DrdI GACNNNNNNGTC 2 cut(s) 20, 590
DseDI GACNNNNNNGTC 2 cut(s) 20, 590
EaeI YGGCCR 2 cut(s) 282, 298
Ecl136II GAGCTC 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 854
Eco47I GGWCC 2 cut(s) 486, 670
Eco53kI GAGCTC 1 cut(s) 852
Eco88I CYCGRG 2 cut(s) 207, 291
Eco91I GGTNACC 2 cut(s) 22, 768
EcoICRI GAGCTC 1 cut(s) 852
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO65I GGTNACC 2 cut(s) 22, 768
EcoT14I CCWWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 854
EgeI GGCGCC 3 cut(s) 115, 169, 430
EheI GGCGCC 3 cut(s) 115, 169, 430
ErhI CCWWGG 1 cut(s) 490
Esp3I CGTCTC 2 cut(s) 190, 839
FaeI CATG 3 cut(s) 229, 283, 580
FaiI YATR 8 cut(s) 227, 281, 551, 578, 627, 783, 822, 881
FatI CATG 3 cut(s) 225, 279, 576
FauI CCCGC 3 cut(s) 201, 856, 868
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 8 cut(s) 40, 109, 112, 214, 427, 474, 618, 662
FokI GGATG 3 cut(s) 577, 770, 845
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 8 cut(s) 40, 109, 112, 214, 427, 474, 618, 662
GlaI GCGC 9 cut(s) 43, 115, 169, 262, 430, 621, 639, 788, 917
GluI GCNGC 8 cut(s) 40, 109, 112, 214, 427, 474, 618, 662
HaeII RGCGCY 4 cut(s) 117, 171, 432, 623
HaeIII GGCC 8 cut(s) 90, 164, 284, 300, 314, 473, 521, 657
HgaI GACGC 2 cut(s) 455, 706
HhaI GCGC 9 cut(s) 44, 116, 170, 263, 431, 622, 640, 789, 918
Hin1I GRCGYC 4 cut(s) 114, 168, 429, 698
Hin1II CATG 3 cut(s) 229, 283, 580
Hin6I GCGC 9 cut(s) 42, 114, 168, 261, 429, 620, 638, 787, 916
HinP1I GCGC 9 cut(s) 42, 114, 168, 261, 429, 620, 638, 787, 916
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 3 cut(s) 459, 883, 900
HphI GGTGA 4 cut(s) 16, 121, 762, 902
Hpy166II GTNNAC 2 cut(s) 340, 349
Hpy188I TCNGA 7 cut(s) 190, 232, 464, 486, 534, 757, 870
Hpy188III TCNNGA 3 cut(s) 11, 207, 684
Hpy8I GTNNAC 2 cut(s) 340, 349
Hpy99I CGWCG 8 cut(s) 125, 311, 350, 353, 380, 449, 587, 590
HpyAV CCTTC 4 cut(s) 379, 427, 461, 899
HpyCH4III ACNGT 2 cut(s) 17, 529
HpyCH4IV ACGT 3 cut(s) 345, 537, 708
HpyCH4V TGCA 2 cut(s) 617, 724
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 161, 222, 646, 721, 795
HpySE526I ACGT 3 cut(s) 345, 537, 708
Hsp92I GRCGYC 4 cut(s) 114, 168, 429, 698
Hsp92II CATG 3 cut(s) 229, 283, 580
HspAI GCGC 9 cut(s) 42, 114, 168, 261, 429, 620, 638, 787, 916
KasI GGCGCC 3 cut(s) 113, 167, 428
Kpn2I TCCGGA 1 cut(s) 683
KroI GCCGGC 3 cut(s) 164, 657, 700
KroNI GCCGGC 3 cut(s) 166, 659, 702
KspI CCGCGG 2 cut(s) 109, 477
Kzo9I GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
LmnI GCTCC 3 cut(s) 108, 179, 857
Lsp1109I GCAGC 2 cut(s) 629, 648
LweI GCATC 4 cut(s) 90, 555, 711, 796
MaeII ACGT 3 cut(s) 345, 537, 708
MaeIII GTNAC 4 cut(s) 22, 127, 694, 768
MalI GATC 8 cut(s) 141, 234, 272, 289, 320, 384, 498, 777
MboI GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
MboII GAAGA 1 cut(s) 586
MflI RGATCY 4 cut(s) 287, 318, 496, 775
MhlI GDGCHC 2 cut(s) 416, 854
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 3 cut(s) 403, 674, 725
MluI ACGCGT 1 cut(s) 447
MluNI TGGCCA 1 cut(s) 284
Mly113I GGCGCC 3 cut(s) 114, 168, 429
MlyI GAGTC 1 cut(s) 892
MmeI TCCRAC 2 cut(s) 213, 735
Mox20I TGGCCA 1 cut(s) 284
MroI TCCGGA 1 cut(s) 683
MroNI GCCGGC 3 cut(s) 164, 657, 700
MscI TGGCCA 1 cut(s) 284
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 3 cut(s) 39, 108, 476
MspR9I CCNGG 5 cut(s) 292, 293, 505, 830, 856
Mva1269I GAATGC 1 cut(s) 216
MvnI CGCG 6 cut(s) 108, 261, 449, 476, 789, 918
MwoI GCNNNNNNNGC 6 cut(s) 152, 161, 222, 646, 721, 795
NaeI GCCGGC 3 cut(s) 166, 659, 702
NarI GGCGCC 3 cut(s) 114, 168, 429
NciI CCSGG 5 cut(s) 292, 293, 505, 830, 856
NdeII GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
NgoMIV GCCGGC 3 cut(s) 164, 657, 700
NlaIII CATG 3 cut(s) 229, 283, 580
NlaIV GGNNCC 7 cut(s) 115, 169, 413, 430, 472, 488, 777
NmeAIII GCCGAG 3 cut(s) 181, 420, 457
NmuCI GTSAC 4 cut(s) 22, 127, 694, 768
NspI RCATGY 1 cut(s) 229
PcsI WCGNNNNNNNCGW 3 cut(s) 303, 354, 372
PctI GAATGC 1 cut(s) 216
PdiI GCCGGC 3 cut(s) 166, 659, 702
PfeI GAWTC 2 cut(s) 459, 900
PflFI GACNNNGTC 2 cut(s) 344, 590
PkrI GCNGC 8 cut(s) 41, 110, 113, 215, 428, 475, 619, 663
PleI GAGTC 1 cut(s) 891
PluTI GGCGCC 3 cut(s) 117, 171, 432
PpsI GAGTC 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 854
PspEI GGTNACC 2 cut(s) 22, 768
PspN4I GGNNCC 7 cut(s) 115, 169, 413, 430, 472, 488, 777
PspPI GGNCC 6 cut(s) 313, 471, 486, 520, 655, 670
PsuI RGATCY 4 cut(s) 287, 318, 496, 775
PsyI GACNNNGTC 2 cut(s) 344, 590
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 854
SacII CCGCGG 2 cut(s) 109, 477
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 8 cut(s) 40, 109, 112, 214, 427, 474, 618, 662
Sau3AI GATC 8 cut(s) 139, 232, 270, 287, 318, 382, 496, 775
Sau96I GGNCC 6 cut(s) 313, 471, 486, 520, 655, 670
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 5 cut(s) 292, 293, 505, 830, 856
SduI GDGCHC 2 cut(s) 416, 854
SetI ASST 9 cut(s) 87, 153, 348, 366, 540, 633, 711, 854, 925
SfaNI GCATC 4 cut(s) 90, 555, 711, 796
SfcI CTRYAG 1 cut(s) 73
SfoI GGCGCC 3 cut(s) 115, 169, 430
Sfr303I CCGCGG 2 cut(s) 109, 477
SgrBI CCGCGG 2 cut(s) 109, 477
SgrDI CGTCGACG 1 cut(s) 347
SinI GGWCC 2 cut(s) 486, 670
SmaI CCCGGG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 9, 80
SmoI CTYRAG 2 cut(s) 9, 80
Sse9I AATT 3 cut(s) 403, 674, 725
SspDI GGCGCC 3 cut(s) 113, 167, 428
SstI GAGCTC 1 cut(s) 854
StyD4I CCNGG 5 cut(s) 290, 291, 503, 828, 854
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 17, 529
TaiI ACGT 3 cut(s) 348, 540, 711
TaqI TCGA 6 cut(s) 123, 269, 309, 324, 348, 903
TasI AATT 3 cut(s) 403, 674, 725
TauI GCSGC 6 cut(s) 42, 111, 114, 216, 429, 476
TfiI GAWTC 2 cut(s) 459, 900
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 4 cut(s) 22, 127, 694, 768
TseI GCWGC 2 cut(s) 617, 661
Tsp45I GTSAC 4 cut(s) 22, 127, 694, 768
TspGWI ACGGA 2 cut(s) 166, 768
TspMI CCCGGG 1 cut(s) 291
Tth111I GACNNNGTC 2 cut(s) 344, 590
VpaK11BI GGWCC 2 cut(s) 486, 670
XagI CCTNNNNNAGG 1 cut(s) 245
XceI RCATGY 1 cut(s) 229
XmaI CCCGGG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.