RLG00000020226

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004838
Physical Location & Seq
Reverse (-)
62660893 .. 62662013
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020226

Sequence Viewer

Length: 978 bp
ATGGCCCCCTTTGTTGCAGAGAGTACCAGCAATTCCGTTGGCACAAAAAAGAAAACCCTAGGCCGGAGAAAAGTCGAAATGAAGAAGGTAGAAGCACTTGACCACCGCCACGTCACTTTTTCCAAGCGCAAGAAAGGACTATTCCAAAAAGCTGACCAACTCAGCAGCCTCACTGGCACAGAAATCGCGGTGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCAGCACCCCAAGCTGTGACGCCGTCACCGATCGTTACCTTGCCGGGTTGTCTTCTAACCAAAATGCCAATTGCATCAGTTGTCAAGACGATATTGGATCTATGAATGTGGAAAGCATTCCTTCGACGAGTTTAAACTGTTCCCAAAATGACAATGTCCATTATCAAAACAATGGCGCCTTGAAAGTTGAAACCACTGCTTTGAAGTGTTCCCCCATTAGGTTTTTGGAGAAAAATATATTGGATGACGGAAAATTGGAATTGGCCCCTAACGGCAATGACGATTATCAAAACGACAGTGCCGTGGTTGGATCTATGATCGTTGAAACCACTCCTTCCCGTCCAAACTTTCCCCAAAGCGATGGTGTAGTGGTCGGATCGAAGATAGTTGAAACGACTCCTTTGAGTTCGAGCTGTCCCGAAGTTAGGGTTTTGGAGGACGATATAATGGGCGAGTATCGCGAAGGGACTAATGGTGGATCTGAGGTGGGGGAGATGAGTGGGGAGATGATTGAGGAAATGATAGAGGAGATGATGAAAGAGAAAGACGACGTGCCGGGTTGTAATGAATTCATGACTGCCTTGATTAGGGTTTTACTTCCAACGACGACTTCAAATTACTATACGGCTATACCTCATTGTTGGTTATGGAGGATGAAGATGAACTTCTTATGGAAAATAGAGGGCTGGGGACTAGTCACTTCAACCCATATGGGGATTGGAGGTGTGGACTGTGGAGGCATATGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

326

Amino Acids

35.51

Weight (kDa)

4.95

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 34 - 76 3.8e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccII CGCG 2 cut(s) 188, 687
AciI CCGC 3 cut(s) 106, 188, 210
AclWI GGATC 4 cut(s) 331, 544, 610, 712
AcsI RAATTY 1 cut(s) 794
AcuI CTGAAG 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 246, 402
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 5 cut(s) 63, 444, 651, 813, 939
AgsI TTSAA 7 cut(s) 409, 416, 430, 551, 617, 840, 930
AhlI ACTAGT 1 cut(s) 919
AjiI CACGTC 2 cut(s) 112, 778
AjuI GAANNNNNNNTTGG 4 cut(s) 449, 481, 820, 852
AluBI AGCT 3 cut(s) 152, 240, 639
AluI AGCT 3 cut(s) 152, 240, 639
AlwI GGATC 4 cut(s) 331, 544, 610, 712
AoxI GGCC 3 cut(s) 3, 61, 489
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 794
Asp700I GAANNNNTTC 1 cut(s) 342
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 2 cut(s) 129, 404
AspS9I GGNCC 2 cut(s) 4, 490
AsuC2I CCSGG 2 cut(s) 271, 783
AsuHPI GGTGA 1 cut(s) 244
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 581
BceAI ACGGC 4 cut(s) 233, 512, 514, 867
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BcnI CCSGG 2 cut(s) 271, 783
BcuI ACTAGT 1 cut(s) 919
BfaI CTAG 2 cut(s) 59, 920
BfoI RGCGCY 1 cut(s) 405
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 166, 211
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 2 cut(s) 167, 212
Bme1390I CCNGG 2 cut(s) 271, 783
BmgBI CACGTC 2 cut(s) 112, 778
BmgT120I GGNCC 2 cut(s) 4, 490
BmiI GGNNCC 3 cut(s) 6, 403, 492
BmrFI CCNGG 2 cut(s) 271, 783
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 270
BpuMI CCSGG 2 cut(s) 271, 783
BsaHI GRCGYC 2 cut(s) 246, 402
BsaJI CCNNGG 2 cut(s) 58, 528
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 444, 651, 813, 939
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 508
BseDI CCNNGG 2 cut(s) 58, 528
BseGI GGATG 2 cut(s) 475, 885
BseLI CCNNNNNNNGG 5 cut(s) 63, 444, 651, 813, 939
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 175, 699
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 767
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 912
Bsh1236I CGCG 2 cut(s) 188, 687
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 3 cut(s) 5, 63, 491
BshNI GGYRCC 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 259
BsiSI CCGG 3 cut(s) 64, 270, 782
BslFI GGGAC 3 cut(s) 627, 706, 930
BslI CCNNNNNNNGG 5 cut(s) 63, 444, 651, 813, 939
BsmFI GGGAC 3 cut(s) 627, 706, 930
BsmI GAATGC 2 cut(s) 212, 342
BsnI GGCC 3 cut(s) 5, 63, 491
Bsp143I GATC 6 cut(s) 256, 323, 536, 543, 602, 704
Bsp68I TCGCGA 1 cut(s) 687
BspACI CCGC 3 cut(s) 106, 188, 210
BspANI GGCC 3 cut(s) 5, 63, 491
BspCNI CTCAG 2 cut(s) 174, 700
BspFNI CGCG 2 cut(s) 188, 687
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 3 cut(s) 6, 403, 492
BspPI GGATC 4 cut(s) 331, 544, 610, 712
BspT107I GGYRCC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 58, 528
BssMI GATC 6 cut(s) 256, 323, 536, 543, 602, 704
BssNI GRCGYC 2 cut(s) 246, 402
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 365, 524, 959
BstACI GRCGYC 2 cut(s) 246, 402
BstDEI CTNAG 2 cut(s) 161, 708
BstDSI CCRYGG 1 cut(s) 528
BstENI CCTNNNNNAGG 1 cut(s) 811
BstF5I GGATG 2 cut(s) 475, 885
BstFNI CGCG 2 cut(s) 188, 687
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 2 cut(s) 129, 404
BstKTI GATC 6 cut(s) 259, 326, 539, 546, 605, 707
BstMBI GATC 6 cut(s) 256, 323, 536, 543, 602, 704
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 174, 237, 684
BstSCI CCNGG 2 cut(s) 269, 781
BstUI CGCG 2 cut(s) 188, 687
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 3 cut(s) 323, 536, 704
BstXI CCANNNNNNTGG 1 cut(s) 587
BstYI RGATCY 3 cut(s) 323, 536, 704
BsuRI GGCC 3 cut(s) 5, 63, 491
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 600
BtrI CACGTC 2 cut(s) 112, 778
BtsCI GGATG 2 cut(s) 475, 885
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 171, 420, 529
BtuMI TCGCGA 1 cut(s) 687
CciI TCATGA 1 cut(s) 798
CfoI GCGC 2 cut(s) 129, 404
Cfr13I GGNCC 2 cut(s) 4, 490
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 799
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 161, 708
DinI GGCGCC 1 cut(s) 403
DpnI GATC 6 cut(s) 258, 325, 538, 545, 604, 706
DpnII GATC 6 cut(s) 256, 323, 536, 543, 602, 704
DraI TTTAAA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 794
EcoT14I CCWWGG 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 802
FalI AAGNNNNNCTT 4 cut(s) 331, 363, 875, 907
FaqI GGGAC 3 cut(s) 627, 706, 930
FatI CATG 1 cut(s) 798
FauNDI CATATG 2 cut(s) 936, 968
Fnu4HI GCNGC 2 cut(s) 166, 211
FokI GGATG 2 cut(s) 482, 892
Fsp4HI GCNGC 2 cut(s) 166, 211
FspBI CTAG 2 cut(s) 59, 920
GlaI GCGC 2 cut(s) 128, 403
GluI GCNGC 2 cut(s) 166, 211
GsaI CCCAGC 1 cut(s) 916
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 3 cut(s) 5, 63, 491
HapII CCGG 3 cut(s) 64, 270, 782
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 129, 404
Hin1I GRCGYC 2 cut(s) 246, 402
Hin1II CATG 1 cut(s) 802
Hin6I GCGC 2 cut(s) 127, 402
HinP1I GCGC 2 cut(s) 127, 402
HinfI GANTC 1 cut(s) 622
HpaII CCGG 3 cut(s) 64, 270, 782
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 955
Hpy188I TCNGA 3 cut(s) 205, 602, 709
Hpy188III TCNNGA 4 cut(s) 311, 644, 686, 799
Hpy8I GTNNAC 1 cut(s) 955
Hpy99I CGWCG 3 cut(s) 355, 779, 835
HpyAV CCTTC 4 cut(s) 79, 357, 570, 683
HpyCH4III ACNGT 3 cut(s) 365, 524, 959
HpyCH4IV ACGT 2 cut(s) 111, 777
HpyCH4V TGCA 2 cut(s) 17, 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 237, 684
HpyF3I CTNAG 2 cut(s) 161, 708
HpySE526I ACGT 2 cut(s) 111, 777
Hsp92I GRCGYC 2 cut(s) 246, 402
Hsp92II CATG 1 cut(s) 802
HspAI GCGC 2 cut(s) 127, 402
KasI GGCGCC 1 cut(s) 401
Kzo9I GATC 6 cut(s) 256, 323, 536, 543, 602, 704
LpnPI CCDG 7 cut(s) 40, 77, 159, 199, 283, 795, 898
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 59, 920
MaeII ACGT 2 cut(s) 111, 777
MaeIII GTNAC 5 cut(s) 112, 242, 250, 260, 922
MalI GATC 6 cut(s) 258, 325, 538, 545, 604, 706
MboI GATC 6 cut(s) 256, 323, 536, 543, 602, 704
MboII GAAGA 4 cut(s) 94, 270, 619, 895
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 3 cut(s) 323, 536, 704
MluCI AATT 6 cut(s) 31, 295, 479, 485, 794, 841
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 1 cut(s) 616
MmeI TCCRAC 3 cut(s) 514, 580, 851
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 359, 976
MspI CCGG 3 cut(s) 64, 270, 782
MspR9I CCNGG 2 cut(s) 271, 783
MssI GTTTAAAC 1 cut(s) 360
MunI CAATTG 1 cut(s) 295
Mva1269I GAATGC 2 cut(s) 212, 342
MvnI CGCG 2 cut(s) 188, 687
MwoI GCNNNNNNNGC 3 cut(s) 174, 237, 684
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 2 cut(s) 271, 783
NdeI CATATG 2 cut(s) 936, 968
NdeII GATC 6 cut(s) 256, 323, 536, 543, 602, 704
NlaIII CATG 1 cut(s) 802
NlaIV GGNNCC 3 cut(s) 6, 403, 492
NmuCI GTSAC 4 cut(s) 112, 242, 250, 922
NruI TCGCGA 1 cut(s) 687
PagI TCATGA 1 cut(s) 798
PcsI WCGNNNNNNNCGW 5 cut(s) 192, 201, 252, 504, 525
PctI GAATGC 2 cut(s) 212, 342
PdmI GAANNNNTTC 1 cut(s) 342
PflFI GACNNNGTC 2 cut(s) 248, 380
PkrI GCNGC 2 cut(s) 167, 212
Ple19I CGATCG 1 cut(s) 259
PleI GAGTC 1 cut(s) 616
PluTI GGCGCC 1 cut(s) 405
PmeI GTTTAAAC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 912
PspN4I GGNNCC 3 cut(s) 6, 403, 492
PspPI GGNCC 2 cut(s) 4, 490
PsuI RGATCY 3 cut(s) 323, 536, 704
PsyI GACNNNGTC 2 cut(s) 248, 380
PvuI CGATCG 1 cut(s) 259
RruI TCGCGA 1 cut(s) 687
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 359, 976
SatI GCNGC 2 cut(s) 166, 211
Sau3AI GATC 6 cut(s) 256, 323, 536, 543, 602, 704
Sau96I GGNCC 2 cut(s) 4, 490
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 2 cut(s) 271, 783
SfaNI GCATC 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 919
Sse9I AATT 6 cut(s) 31, 295, 479, 485, 794, 841
SsiI CCGC 3 cut(s) 106, 188, 210
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 2 cut(s) 59, 920
StyD4I CCNGG 2 cut(s) 269, 781
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 3 cut(s) 365, 524, 959
TaiI ACGT 2 cut(s) 114, 780
TaqI TCGA 4 cut(s) 75, 350, 605, 635
TasI AATT 6 cut(s) 31, 295, 479, 485, 794, 841
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 359, 976
Tru9I TTAA 2 cut(s) 359, 976
TscAI CASTG 3 cut(s) 178, 427, 529
TseFI GTSAC 4 cut(s) 112, 242, 250, 922
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 4 cut(s) 112, 242, 250, 922
TspDTI ATGAA 7 cut(s) 95, 344, 776, 787, 807, 896, 902
TspGWI ACGGA 2 cut(s) 25, 489
TspRI CASTG 3 cut(s) 178, 427, 529
Tth111I GACNNNGTC 2 cut(s) 248, 380
XagI CCTNNNNNAGG 1 cut(s) 811
XapI RAATTY 1 cut(s) 794
XcmI CCANNNNNNNNNTGG 2 cut(s) 448, 941
XmaJI CCTAGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 59, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.