Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004838

Physical Location & Seq

Genomic Coordinates Forward (+)

2565434 .. 2566132

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTAAGACTAAGATTCCCAAGAGTGAGATCTCAGACAATAATAATACTAGTGATGGAAAAAAGAGAAGCAAAGGTCGAAGAAGAATTGAAATCAAGAGAATTGAAGAGAAGAACAAGCGCCACGTGACCTTCTCCAAGCGCAAAAAGGGTATCTTCAACAAAGCCGCCGAGCTCAGCGTTTTGAGCGGTGCAGAGATAGCGACGATGGTCGTGTCGAGCAACGGCAAGGTGTTCTGCTTCGGCACACCCAACTACGACGCGGTCATCAACTGCTACCTTGGCCACCACACTGCCCCCTTGGCTGCAGCAGGTCAACCAGATCATCGTGCTTTGCTGCATGGTAAGACAATGCGAAGTAGTAATAAACAAGTTGAGAACTATGTGGAAGCTACGAGGCACCTCGAGGCAGAGAAGATATCAATCAAGGGTGAGGAGAATAATAATAATATTAATTTTGCTATTAATAATAATAATTATTATTATAATAGTGATTATGAGGGACGAGAAGGAGGTTGTGGTTATGCGTGGTGGGAGAGGCCGATCCCGATTGGGATGATGAGTAGTTTGGAGGAGTTGGAAGAGTACAAGGCAGCCTTGTACAAGTTGAAACACAATGTGGAGGTTCGAACCAATCAAATGATTATGGGAAGTGCTCCTTCTAATTACTATTCATCGCTTTTGGTTATGGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

233

Amino Acids

26.16

Weight (kDa)

9.26

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25061 FvH4_6g35390 FvH4_6g35690
malus_domestica	MD09G1170500.v1.1 MD09G1176200.v1.1 MD17G1150800.v1.1
prunus_persica	Prupe.3G032000_v2.0.a1 Prupe.3G035200_v2.0.a1
pyrus_communis	pycom09g09140 pycom17g14390
rosa_chinensis	RchiOBHm_Chr2g0147681
rosa_laevigata	RLG00000020226 RLG00000020270
rosa_multiflora	Rmu_sc0000308.1_g000012 Rmu_sc0000566.1_g000017
rosa_roxburghii	Rroxscaffold_2G00099390 Rroxscaffold_2G00099860
rosa_rugosa	Rorug02G0397400 Rorug02G0400800
rosa_samantha	Rh2AG453800 Rh2AG453900 Rh2AG458200 Rh2BG466600 Rh2BG470900 Rh2CG440900 Rh2CG441000 Rh2CG445600 Rh2DG475500 Rh2DG480200
rosa_wichuraiana	Rw0G022040 Rw2G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AbsI	CCTCGAGG	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	399
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	168, 189, 263
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	283
AcvI	CACGTG	1 cut(s)	127
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	2 cut(s)	587, 602
AgsI	TTSAA	4 cut(s)	92, 107, 160, 610
AhlI	ACTAGT	1 cut(s)	50
AluBI	AGCT	2 cut(s)	175, 392
AluI	AGCT	2 cut(s)	175, 392
Alw21I	GWGCWC	2 cut(s)	177, 658
AlwI	GGATC	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	283, 539
ApeKI	GCWGC	4 cut(s)	305, 308, 337, 593
AseI	ATTAAT	2 cut(s)	453, 465
AspLEI	GCGC	2 cut(s)	123, 144
AsuHPI	GGTGA	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	177, 658
BbvI	GCAGC	4 cut(s)	292, 320, 324, 605
BccI	CCATC	2 cut(s)	50, 202
BceAI	ACGGC	1 cut(s)	241
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	5 cut(s)	168, 306, 309, 338, 594
BlpI	GCTNAGC	1 cut(s)	176
BlsI	GCNGC	5 cut(s)	169, 307, 310, 339, 595
BmeT110I	CYCGRG	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	401
BoxI	GACNNNNGTC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	280, 300
Bse8I	GATNNNNATC	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	280, 300
BseGI	GGATG	1 cut(s)	561
BseJI	GATNNNNATC	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	48, 190
BseRI	GAGGAG	2 cut(s)	449, 587
BseXI	GCAGC	4 cut(s)	292, 320, 324, 605
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	285, 541
BshNI	GGYRCC	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	177, 658
BsiHKCI	CYCGRG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	285, 541
BsoBI	CYCGRG	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	628
Bsp1286I	GDGCHC	2 cut(s)	177, 658
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	30, 322, 543
Bsp1720I	GCTNAGC	1 cut(s)	176
BspACI	CCGC	3 cut(s)	168, 189, 263
BspANI	GGCC	2 cut(s)	285, 541
BspCNI	CTCAG	2 cut(s)	47, 189
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	401
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	399
BsrBI	CCGCTC	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	280, 300
BssMI	GATC	3 cut(s)	30, 322, 543
BssT1I	CCWWGG	2 cut(s)	280, 300
Bst6I	CTCTTC	2 cut(s)	102, 576
BstAUI	TGTACA	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	628
BstDEI	CTNAG	4 cut(s)	6, 12, 34, 176
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 144
BstKTI	GATC	3 cut(s)	33, 325, 546
BstMBI	GATC	3 cut(s)	30, 322, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 200, 282, 302
BstPAI	GACNNNNGTC	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	4 cut(s)	292, 320, 324, 605
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	285, 541
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	302
CfoI	GCGC	2 cut(s)	123, 144
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	586, 601
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	8 cut(s)	5, 167, 175, 285, 305, 392, 541, 596
CviKI_1	RGCY	8 cut(s)	5, 167, 175, 285, 305, 392, 541, 596
CviQI	GTAC	2 cut(s)	586, 601
DdeI	CTNAG	4 cut(s)	6, 12, 34, 176
DpnI	GATC	3 cut(s)	32, 324, 545
DpnII	GATC	3 cut(s)	30, 322, 543
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	102, 576
EarI	CTCTTC	2 cut(s)	102, 576
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	280, 300
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	280, 300
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	2 cut(s)	280, 300
FaeI	CATG	1 cut(s)	344
FaiI	YATR	7 cut(s)	342, 384, 486, 498, 525, 647, 689
FalI	AAGNNNNNCTT	6 cut(s)	140, 172, 581, 613, 643, 675
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	168, 306, 309, 338, 594
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	168, 306, 309, 338, 594
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	2 cut(s)	122, 143
GluI	GCNGC	5 cut(s)	168, 306, 309, 338, 594
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	285, 541
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	123, 144
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	2 cut(s)	121, 142
HinP1I	GCGC	2 cut(s)	121, 142
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	97, 547
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	2 cut(s)	208, 263
HpyAV	CCTTC	3 cut(s)	142, 503, 669
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	194, 308, 340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 200, 282, 302
HpyF3I	CTNAG	4 cut(s)	6, 12, 34, 176
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	2 cut(s)	121, 142
Kzo9I	GATC	3 cut(s)	30, 322, 543
LmnI	GCTCC	1 cut(s)	661
LpnPI	CCDG	2 cut(s)	297, 333
Lsp1109I	GCAGC	4 cut(s)	292, 320, 324, 605
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	32, 324, 545
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	3 cut(s)	30, 322, 543
MboII	GAAGA	7 cut(s)	93, 96, 119, 124, 148, 427, 593
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	177, 658
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	5 cut(s)	87, 102, 454, 475, 664
MluNI	TGGCCA	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	9 cut(s)	390, 400, 413, 427, 493, 506, 531, 565, 616
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	3 cut(s)	453, 465, 697
Msp20I	TGGCCA	1 cut(s)	285
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	186, 200, 282, 302
NdeII	GATC	3 cut(s)	30, 322, 543
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	16
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	169, 307, 310, 339, 595
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	209
PshBI	ATTAAT	2 cut(s)	453, 465
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	401
PspXI	VCTCGAGB	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	587, 602
RsaNI	GTAC	2 cut(s)	586, 601
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	453, 465, 697
SatI	GCNGC	5 cut(s)	168, 306, 309, 338, 594
Sau3AI	GATC	3 cut(s)	30, 322, 543
SduI	GDGCHC	2 cut(s)	177, 658
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	404
SfuI	TTCGAA	1 cut(s)	628
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	5 cut(s)	87, 102, 454, 475, 664
SsiI	CCGC	3 cut(s)	168, 189, 263
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	177
StyI	CCWWGG	2 cut(s)	280, 300
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	79, 218, 405, 628
TasI	AATT	5 cut(s)	87, 102, 454, 475, 664
TatI	WGTACW	2 cut(s)	585, 600
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	453, 465, 697
Tru9I	TTAA	3 cut(s)	453, 465, 697
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	305, 308, 337, 593
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	663
TspRI	CASTG	1 cut(s)	298
Tth111I	GACNNNGTC	1 cut(s)	263
VspI	ATTAAT	2 cut(s)	453, 465
XhoI	CTCGAG	1 cut(s)	404
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.