Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004838

Physical Location & Seq

Genomic Coordinates Reverse (-)

59768835 .. 59769350

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG440900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCCCTAATGGCAATGTCGATTATCAAAACGACAATGCCGTGGTTGGATCTATAATCGTTGAAACCACGCCTTCCCGTTCAAACTTTCCCCAAAGTGACGGTGTAGTGGTCAGATCGAAGATAGTTGAAACGACTCCTTTGAGTTCGAGCTGTCCCGAAATTAGGGTTTTGGAGGACGATATAATGGGTGATGGATACTTGAATTTGATGAACGACACCGTTTTTCCTATCAAGCCAGGTGAGTATCGCGAAGGGACTAATGGTGGATCTGAGGTGGAGGAGATGATTGAGAAAATGATAGAGGAGATGATGAAAGAGAAAGACGACGTGCCGGGTTGTAATGAATTCATGACTGCCTTGATTAGGGTTTTACTTCCAACGACGACTTCAAATTACTATACCTCATTGTTGGTTATGGAGGATGAAGATGAACTTCTTATGGAAAATAGTGGGCTAGGGACTTGTCACTTCAACCCATATGGGGATTGGAGGTGTGGAGGCATATGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.94

Weight (kDa)

4.12

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25061 FvH4_6g35390 FvH4_6g35690
malus_domestica	MD09G1170500.v1.1 MD09G1176200.v1.1 MD17G1150800.v1.1
prunus_persica	Prupe.3G032000_v2.0.a1 Prupe.3G035200_v2.0.a1
pyrus_communis	pycom09g09140 pycom17g14390
rosa_chinensis	RchiOBHm_Chr2g0147681
rosa_laevigata	RLG00000020226 RLG00000020270
rosa_multiflora	Rmu_sc0000308.1_g000012 Rmu_sc0000566.1_g000017
rosa_roxburghii	Rroxscaffold_2G00099390 Rroxscaffold_2G00099860
rosa_rugosa	Rorug02G0397400 Rorug02G0400800
rosa_samantha	Rh2AG453800 Rh2AG453900 Rh2AG458200 Rh2BG466600 Rh2BG470900 Rh2CG440900 Rh2CG441000 Rh2CG445600 Rh2DG475500 Rh2DG480200
rosa_wichuraiana	Rw0G022040 Rw2G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	252
AclWI	GGATC	2 cut(s)	58, 277
AcsI	RAATTY	2 cut(s)	205, 347
AfiI	CCNNNNNNNGG	3 cut(s)	165, 366, 484
AgsI	TTSAA	6 cut(s)	65, 84, 131, 205, 393, 475
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AlwI	GGATC	2 cut(s)	58, 277
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	205, 347
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	203, 254
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	240, 336
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	240, 336
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 366, 484
Bse3DI	GCAATG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	165, 366, 484
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	296, 320
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	3 cut(s)	141, 271, 475
BslI	CCNNNNNNNGG	3 cut(s)	165, 366, 484
BsmFI	GGGAC	3 cut(s)	141, 271, 475
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	50, 116, 269
Bsp68I	TCGCGA	1 cut(s)	252
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	58, 277
BsrDI	GCAATG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	50, 116, 269
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	104, 223
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	53, 119, 272
BstMBI	GATC	3 cut(s)	50, 116, 269
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	238, 334
BstUI	CGCG	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	50, 269
BstYI	RGATCY	2 cut(s)	50, 269
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	430
BtuMI	TCGCGA	1 cut(s)	252
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	4 cut(s)	5, 153, 238, 457
CviKI_1	RGCY	4 cut(s)	5, 153, 238, 457
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	52, 118, 271
DpnII	GATC	3 cut(s)	50, 116, 269
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	355
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	3 cut(s)	141, 271, 475
FatI	CATG	1 cut(s)	351
FauNDI	CATATG	2 cut(s)	481, 506
FokI	GGATG	1 cut(s)	437
FspBI	CTAG	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	203, 254
Hpy188I	TCNGA	2 cut(s)	116, 274
Hpy188III	TCNNGA	3 cut(s)	158, 251, 352
Hpy99I	CGWCG	2 cut(s)	332, 388
HpyAV	CCTTC	2 cut(s)	84, 248
HpyCH4III	ACNGT	2 cut(s)	104, 223
HpyCH4IV	ACGT	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	50, 116, 269
LpnPI	CCDG	3 cut(s)	225, 252, 348
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	98, 467
MalI	GATC	3 cut(s)	52, 118, 271
MboI	GATC	3 cut(s)	50, 116, 269
MboII	GAAGA	2 cut(s)	133, 440
MflI	RGATCY	2 cut(s)	50, 269
MluCI	AATT	4 cut(s)	162, 205, 347, 394
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	28, 404
MnlI	CCTC	8 cut(s)	169, 268, 274, 298, 415, 415, 486, 494
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	240, 336
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	252
NciI	CCSGG	1 cut(s)	336
NdeI	CATATG	2 cut(s)	481, 506
NdeII	GATC	3 cut(s)	50, 116, 269
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	98, 467
NruI	TCGCGA	1 cut(s)	252
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	50, 269
RruI	TCGCGA	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	50, 116, 269
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	240, 336
SetI	ASST	6 cut(s)	155, 244, 279, 333, 407, 497
Sse9I	AATT	4 cut(s)	162, 205, 347, 394
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	238, 334
TaaI	ACNGT	2 cut(s)	104, 223
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	21, 119, 149
TasI	AATT	4 cut(s)	162, 205, 347, 394
TseFI	GTSAC	2 cut(s)	98, 467
Tsp45I	GTSAC	2 cut(s)	98, 467
TspDTI	ATGAA	6 cut(s)	227, 329, 340, 360, 441, 447
XagI	CCTNNNNNAGG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	205, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.