FvH4_6g35390

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004838
Physical Location & Seq
Reverse (-)
27931881 .. 27932903
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35390.t1

Sequence Viewer

Length: 1023 bp
ATGGCTCCCGTTATTGCAAAGAGCACCAGCAATTCCGTTGGCACAAAAAAGAAAACCCTAGGCCGGAGAAAGGTCGAAATGAAGAAGGTAGAAGCACCTGACCACCGCCACGTCACCTTCTCCAAGCGCAAGAGGGGACTTTTCCAAAAAGCCGGCCAACTCAGCAGCCTCACTGGTAGCGAAATCGCAGCGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCGGCACCCCAAGCTGTGACGCCGTCGCCGATCGTTACCTCGCCGGTTTGTCTCCTAACCAAAATGGCAATGATCAAAACCACGGCATCAGTTTTCGAGATGGCATTGGATCTATAATTGTGGAAAGCACTCCGTCGACGAGTAGTTCATACTATTCCCAAAACGACAATGTCCATTATCAAGAAAATGGCGCCGTAGTCGGACCTATGATAGCTGAAACCATTCCTTCGAAGGGTTCCCCTATTAGGGTTTTGGAGGATAATATTTTGGATAACAGAAACTTGGATTTGGCCCCGAACGGCAATGCCCATTATCAAAACAACAATGCCGTCGTTGAATCAATGATCGTTGAAATCACTTCTTTCTGTTCAAACTTCCCCCAAAGCGACGGTGTAGTGATCGGATCGAAGATAGATGAAACGACTCCTTTGAGTTCGAGCTGCTCCGAATTTTTGGAAGGTGATGGGTACTTGAATTTGATGAACGACACCGTTTCACCTGCAGAGCCATGTCCGTATCAAGAAGGTTTTGATGGATCTGAGGCGGGGGAGATGAGTGAGGAGATGATTGAGGAAATGATAGAGGAGATGATGAATGAGAAAGTGGATGAGGTGCCGCGTTGTAATGAATTTCTAACTAACTTGGTTAGGGCTTTACTTCCAACTACGACCTCGAGTTACTATACCTCGTTGTTGGTTATGGAGGATCAAGATGAACTTATTATGGACAACAGGGGGCTGGGGTCTTGTTACTTCAACCCATATGAGGATTGGAGGTGTGGAGGCATTTCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

341

Amino Acids

37.15

Weight (kDa)

4.64

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 29 - 76 9.1e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 733
Acc36I ACCTGC 1 cut(s) 733
AccB1I GGYRCC 3 cut(s) 230, 416, 838
AccI GTMKAC 1 cut(s) 362
AccII CGCG 1 cut(s) 844
AciI CCGC 5 cut(s) 106, 191, 210, 770, 842
AclWI GGATC 4 cut(s) 343, 637, 769, 939
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 3 cut(s) 674, 700, 854
AcyI GRCGYC 2 cut(s) 246, 417
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 6 cut(s) 63, 70, 458, 471, 472, 991
AgsI TTSAA 5 cut(s) 563, 578, 597, 700, 982
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 3 cut(s) 240, 440, 666
AluI AGCT 3 cut(s) 240, 440, 666
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 4 cut(s) 343, 637, 769, 939
Ama87I CYCGRG 1 cut(s) 898
AoxI GGCC 3 cut(s) 61, 154, 516
ApeKI GCWGC 3 cut(s) 165, 188, 666
ApoI RAATTY 3 cut(s) 674, 700, 854
Asp700I GAANNNNTTC 1 cut(s) 447
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 2 cut(s) 129, 419
AspS9I GGNCC 2 cut(s) 428, 517
AsuHPI GGTGA 3 cut(s) 106, 698, 714
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 898
AvaII GGWCC 1 cut(s) 428
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 3 cut(s) 230, 416, 838
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 177, 200, 653
BccI CCATC 3 cut(s) 320, 683, 752
BceAI ACGGC 5 cut(s) 233, 325, 404, 539, 541
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 733
BisI GCNGC 5 cut(s) 166, 189, 211, 667, 842
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 5 cut(s) 167, 190, 212, 668, 843
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 898
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 428, 517
BmiI GGNNCC 6 cut(s) 6, 232, 418, 463, 519, 840
BmsI GCATC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 455
BsaHI GRCGYC 2 cut(s) 246, 417
BsaJI CCNNGG 2 cut(s) 58, 307
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 70, 458, 471, 472, 991
Bse118I RCCGGY 2 cut(s) 152, 269
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 301, 535
BseDI CCNNGG 2 cut(s) 58, 307
BseGI GGATG 1 cut(s) 838
BseLI CCNNNNNNNGG 6 cut(s) 63, 70, 458, 471, 472, 991
BseMI GCAATG 2 cut(s) 301, 535
BseMII CTCAG 2 cut(s) 175, 756
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 800, 824
BseXI GCAGC 3 cut(s) 177, 200, 653
BseYI CCCAGC 1 cut(s) 964
Bsh1236I CGCG 1 cut(s) 844
Bsh1285I CGRYCG 2 cut(s) 195, 259
BshFI GGCC 3 cut(s) 63, 156, 518
BshNI GGYRCC 3 cut(s) 230, 416, 838
BsiEI CGRYCG 2 cut(s) 195, 259
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 898
BsiSI CCGG 3 cut(s) 64, 153, 270
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 6 cut(s) 63, 70, 458, 471, 472, 991
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 63, 156, 518
BsoBI CYCGRG 1 cut(s) 898
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
BspACI CCGC 5 cut(s) 106, 191, 210, 770, 842
BspANI GGCC 3 cut(s) 63, 156, 518
BspCNI CTCAG 2 cut(s) 174, 757
BspFNI CGCG 1 cut(s) 844
BspLI GGNNCC 6 cut(s) 6, 232, 418, 463, 519, 840
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 4 cut(s) 343, 637, 769, 939
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 3 cut(s) 230, 416, 838
BsrDI GCAATG 2 cut(s) 301, 535
BsrFI RCCGGY 2 cut(s) 152, 269
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 2 cut(s) 152, 269
BssECI CCNNGG 2 cut(s) 58, 307
BssMI GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
BssNI GRCGYC 2 cut(s) 246, 417
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 617, 718
BstACI GRCGYC 2 cut(s) 246, 417
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 161, 765
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 838
BstFNI CGCG 1 cut(s) 844
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 2 cut(s) 129, 419
BstKTI GATC 8 cut(s) 259, 301, 338, 573, 627, 632, 764, 934
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
BstMCI CGRYCG 2 cut(s) 195, 259
BstMWI GCNNNNNNNGC 2 cut(s) 162, 237
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 1 cut(s) 844
BstV1I GCAGC 3 cut(s) 177, 200, 653
BstX2I RGATCY 2 cut(s) 335, 761
BstYI RGATCY 2 cut(s) 335, 761
BsuRI GGCC 3 cut(s) 63, 156, 518
BtgI CCRYGG 1 cut(s) 307
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 838
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 2 cut(s) 129, 419
Cfr10I RCCGGY 2 cut(s) 152, 269
Cfr13I GGNCC 2 cut(s) 428, 517
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 694
CviAII CATG 1 cut(s) 735
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 2 cut(s) 161, 765
DinI GGCGCC 1 cut(s) 418
DpnI GATC 8 cut(s) 258, 300, 337, 572, 626, 631, 763, 933
DpnII GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
EaeI YGGCCR 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 418
EheI GGCGCC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 738
FaiI YATR 9 cut(s) 341, 376, 434, 736, 909, 926, 950, 988, 990
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 734
FauI CCCGC 1 cut(s) 763
FauNDI CATATG 1 cut(s) 988
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 166, 189, 211, 667, 842
FokI GGATG 1 cut(s) 845
Fsp4HI GCNGC 5 cut(s) 166, 189, 211, 667, 842
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 128, 418
GluI GCNGC 5 cut(s) 166, 189, 211, 667, 842
GsaI CCCAGC 1 cut(s) 968
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 3 cut(s) 63, 156, 518
HapII CCGG 3 cut(s) 64, 153, 270
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 129, 419
Hin1I GRCGYC 2 cut(s) 246, 417
Hin1II CATG 1 cut(s) 738
Hin6I GCGC 2 cut(s) 127, 417
HinP1I GCGC 2 cut(s) 127, 417
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 2 cut(s) 563, 649
HpaII CCGG 3 cut(s) 64, 153, 270
HphI GGTGA 3 cut(s) 106, 698, 714
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 5 cut(s) 205, 428, 629, 673, 766
Hpy188III TCNNGA 4 cut(s) 323, 407, 746, 935
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 5 cut(s) 254, 364, 367, 560, 617
HpyAV CCTTC 6 cut(s) 79, 127, 451, 462, 677, 743
HpyCH4III ACNGT 2 cut(s) 617, 718
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 17, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 237
HpyF3I CTNAG 2 cut(s) 161, 765
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 246, 417
Hsp92II CATG 1 cut(s) 738
HspAI GCGC 2 cut(s) 127, 417
KasI GGCGCC 1 cut(s) 416
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
LmnI GCTCC 2 cut(s) 10, 674
Lsp1109I GCAGC 3 cut(s) 177, 200, 653
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 5 cut(s) 112, 242, 260, 902, 974
MalI GATC 8 cut(s) 258, 300, 337, 572, 626, 631, 763, 933
MboI GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
MboII GAAGA 2 cut(s) 94, 646
MflI RGATCY 2 cut(s) 335, 761
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 5 cut(s) 31, 342, 674, 700, 854
Mly113I GGCGCC 1 cut(s) 417
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 2 cut(s) 406, 911
MroNI GCCGGC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 3 cut(s) 64, 153, 270
Mva1269I GAATGC 1 cut(s) 212
MvnI CGCG 1 cut(s) 844
MwoI GCNNNNNNNGC 2 cut(s) 162, 237
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 417
NdeI CATATG 1 cut(s) 988
NdeII GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 738
NlaIV GGNNCC 6 cut(s) 6, 232, 418, 463, 519, 840
NmuCI GTSAC 2 cut(s) 112, 242
NspV TTCGAA 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 898
PaqCI CACCTGC 1 cut(s) 733
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 201, 252
PctI GAATGC 1 cut(s) 212
PdiI GCCGGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 563
PflFI GACNNNGTC 2 cut(s) 248, 395
PkrI GCNGC 5 cut(s) 167, 190, 212, 668, 843
Ple19I CGATCG 1 cut(s) 259
PleI GAGTC 1 cut(s) 643
PluTI GGCGCC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 964
PspN4I GGNNCC 6 cut(s) 6, 232, 418, 463, 519, 840
PspPI GGNCC 2 cut(s) 428, 517
PspXI VCTCGAGB 1 cut(s) 898
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 2 cut(s) 335, 761
PsyI GACNNNGTC 2 cut(s) 248, 395
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SalI GTCGAC 1 cut(s) 361
SatI GCNGC 5 cut(s) 166, 189, 211, 667, 842
Sau3AI GATC 8 cut(s) 256, 298, 335, 570, 624, 629, 761, 931
Sau96I GGNCC 2 cut(s) 428, 517
SchI GAGTC 1 cut(s) 643
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 726
SfoI GGCGCC 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 898
SfuI TTCGAA 1 cut(s) 455
SgrDI CGTCGACG 1 cut(s) 361
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 898
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
Sse9I AATT 5 cut(s) 31, 342, 674, 700, 854
SsiI CCGC 5 cut(s) 106, 191, 210, 770, 842
SspDI GGCGCC 1 cut(s) 416
SspI AATATT 1 cut(s) 490
SspMI CTAG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 617, 718
TaiI ACGT 1 cut(s) 114
TaqI TCGA 7 cut(s) 75, 322, 362, 455, 632, 662, 899
TasI AATT 5 cut(s) 31, 342, 674, 700, 854
TauI GCSGC 2 cut(s) 213, 844
TfiI GAWTC 1 cut(s) 563
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 112, 242
TseI GCWGC 3 cut(s) 165, 188, 666
Tsp45I GTSAC 2 cut(s) 112, 242
TspDTI ATGAA 7 cut(s) 95, 363, 657, 722, 833, 867, 954
TspGWI ACGGA 3 cut(s) 25, 348, 729
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 2 cut(s) 248, 395
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 3 cut(s) 674, 700, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 993
XhoI CTCGAG 1 cut(s) 898
XmaJI CCTAGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.