Rh2DG480200

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004838
Physical Location & Seq
Forward (+)
69434509 .. 69435474
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG480200.1

Sequence Viewer

Length: 693 bp
ATGGCTGAACCAAACAATAACAATGTACTGCTTTCCCCTGTGGATGAATCGAATAATAACAATGTACTGCCACCGCCGGTGAAGAAAACCAAAGGCCGAAGAAGGGTGGAAATCAAGAAGGTGGAAGCAGCCAGCAACCGCCATGTCACCTTCTCGAAGCGCAAGAAGGGCCTTTTCAACAAGGCAGCCGAACTGAGCCTCTTGACCGGCGCAGAAACCGCAGCGATAGTAGTCTCCGGCAATGGCAGGATGTTCGGTTTCGGCAGCTCCAGTTGCGACGCCGTCATCCACCGTTACCTTGCAGAGAGCAACCCTCAAGCAGCAAGAGAGCCGGATCGTCGCAACAAAAACGACGCCGTGAACTCGGCCAATTTGGCAAAGCTGAGGCAGCAGTTATTAGAGGCCCGGAGGCAGCTGGAGGAGGAGAAGAAGCTGGCGGTGATGATACAGCAGAGGAAACAGGTGGCGGCAGGACCTGCCGAGTTGTGGTGGGAGGAGGAGATGATAGATCAAAATCCGAAGGAGTTGGAGAGTTACTCTGAGGCGTTGCATAGGCTGAAGAGTGATGTGGAGAGGAGAGCTCAGCAGAAGATTATGAATCTTCCATGCCGCTATACGTCGCTAATGGATGGTAGAGTTGTCATGGGTGAGAATTTTATGAACAATAATAATACCAATATGAACAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

230

Amino Acids

26.0

Weight (kDa)

9.56

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 40 - 87 5.8e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AciI CCGC 6 cut(s) 74, 139, 219, 437, 467, 610
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 1 cut(s) 578
AcyI GRCGYC 2 cut(s) 279, 354
AfaI GTAC 2 cut(s) 27, 66
AfiI CCNNNNNNNGG 2 cut(s) 103, 486
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 5 cut(s) 267, 382, 415, 433, 581
AluI AGCT 5 cut(s) 267, 382, 415, 433, 581
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 342
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 4 cut(s) 94, 169, 366, 402
ApeKI GCWGC 7 cut(s) 128, 185, 221, 264, 320, 388, 412
ApoI RAATTY 1 cut(s) 652
AspLEI GCGC 2 cut(s) 162, 212
AspS9I GGNCC 3 cut(s) 169, 403, 473
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 4 cut(s) 91, 139, 451, 659
AvaII GGWCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 583
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 7 cut(s) 140, 197, 233, 276, 332, 400, 424
BccI CCATC 1 cut(s) 623
BceAI ACGGC 2 cut(s) 266, 341
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 484
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 610
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 9 cut(s) 130, 187, 223, 266, 322, 390, 414, 469, 611
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 3 cut(s) 169, 403, 473
BmrFI CCNGG 1 cut(s) 406
BplI GAGNNNNNCTC 6 cut(s) 298, 330, 521, 553, 565, 597
BpmI CTGGAG 2 cut(s) 253, 437
Bpu10I CCTNAGC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 513
BsaHI GRCGYC 2 cut(s) 279, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 486
Bse118I RCCGGY 2 cut(s) 76, 206
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 513
BseGI GGATG 4 cut(s) 49, 255, 285, 634
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 2 cut(s) 103, 486
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 4 cut(s) 185, 374, 531, 596
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 5 cut(s) 434, 437, 509, 512, 589
BseXI GCAGC 7 cut(s) 140, 197, 233, 276, 332, 400, 424
BshFI GGCC 4 cut(s) 96, 171, 368, 404
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 5 cut(s) 77, 207, 237, 332, 406
BslI CCNNNNNNNGG 2 cut(s) 103, 486
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 4 cut(s) 96, 171, 368, 404
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 2 cut(s) 334, 508
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 6 cut(s) 74, 139, 219, 437, 467, 610
BspANI GGCC 4 cut(s) 96, 171, 368, 404
BspCNI CTCAG 4 cut(s) 186, 375, 532, 595
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 2 cut(s) 76, 206
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 2 cut(s) 76, 206
BssMI GATC 2 cut(s) 334, 508
BssNI GRCGYC 2 cut(s) 279, 354
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 554
BstACI GRCGYC 2 cut(s) 279, 354
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 133, 435
BstDEI CTNAG 4 cut(s) 194, 383, 540, 582
BstF5I GGATG 4 cut(s) 49, 255, 285, 634
BstHHI GCGC 2 cut(s) 162, 212
BstKTI GATC 2 cut(s) 337, 511
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 334, 508
BstMWI GCNNNNNNNGC 6 cut(s) 168, 218, 273, 374, 388, 476
BstSCI CCNGG 1 cut(s) 404
BstV1I GCAGC 7 cut(s) 140, 197, 233, 276, 332, 400, 424
BsuRI GGCC 4 cut(s) 96, 171, 368, 404
BtsCI GGATG 4 cut(s) 49, 255, 285, 634
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 133, 435
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 2 cut(s) 162, 212
Cfr10I RCCGGY 2 cut(s) 76, 206
Cfr13I GGNCC 3 cut(s) 169, 403, 473
CseI GACGC 2 cut(s) 287, 362
Csp6I GTAC 2 cut(s) 26, 65
CviAII CATG 3 cut(s) 143, 606, 643
CviQI GTAC 2 cut(s) 26, 65
DdeI CTNAG 4 cut(s) 194, 383, 540, 582
DpnI GATC 2 cut(s) 336, 510
DpnII GATC 2 cut(s) 334, 508
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 581
EcoO109I RGGNCCY 2 cut(s) 169, 473
EcoT38I GRGCYC 1 cut(s) 583
FaeI CATG 3 cut(s) 146, 609, 646
FaiI YATR 9 cut(s) 144, 552, 596, 607, 615, 644, 659, 680, 689
FatI CATG 3 cut(s) 142, 605, 642
Fnu4HI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 610
FokI GGATG 4 cut(s) 56, 262, 272, 641
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 610
GlaI GCGC 2 cut(s) 161, 211
GluI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 610
GsuI CTGGAG 2 cut(s) 253, 437
HaeIII GGCC 4 cut(s) 96, 171, 368, 404
HapII CCGG 5 cut(s) 77, 207, 237, 332, 406
HgaI GACGC 2 cut(s) 287, 362
HhaI GCGC 2 cut(s) 162, 212
Hin1I GRCGYC 2 cut(s) 279, 354
Hin1II CATG 3 cut(s) 146, 609, 646
Hin6I GCGC 2 cut(s) 160, 210
HinP1I GCGC 2 cut(s) 160, 210
HinfI GANTC 2 cut(s) 47, 598
HpaII CCGG 5 cut(s) 77, 207, 237, 332, 406
HphI GGTGA 4 cut(s) 91, 139, 451, 659
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 519, 541
Hpy188III TCNNGA 3 cut(s) 115, 154, 202
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 4 cut(s) 281, 342, 356, 622
HpyAV CCTTC 5 cut(s) 96, 112, 160, 160, 514
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 2 cut(s) 302, 550
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 218, 273, 374, 388, 476
HpyF3I CTNAG 4 cut(s) 194, 383, 540, 582
HpySE526I ACGT 1 cut(s) 617
Hsp92I GRCGYC 2 cut(s) 279, 354
Hsp92II CATG 3 cut(s) 146, 609, 646
HspAI GCGC 2 cut(s) 160, 210
Kzo9I GATC 2 cut(s) 334, 508
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 7 cut(s) 140, 197, 233, 276, 332, 400, 424
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 3 cut(s) 145, 293, 533
MalI GATC 2 cut(s) 336, 510
MboI GATC 2 cut(s) 334, 508
MboII GAAGA 6 cut(s) 94, 111, 439, 571, 593, 601
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 2 cut(s) 370, 652
MmeI TCCRAC 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 5 cut(s) 77, 207, 237, 332, 406
MspR9I CCNGG 1 cut(s) 406
MwoI GCNNNNNNNGC 6 cut(s) 168, 218, 273, 374, 388, 476
NciI CCSGG 1 cut(s) 406
NdeII GATC 2 cut(s) 334, 508
NlaIII CATG 3 cut(s) 146, 609, 646
NmeAIII GCCGAG 2 cut(s) 344, 505
NmuCI GTSAC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 47, 598
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 9 cut(s) 130, 187, 223, 266, 322, 390, 414, 469, 611
PpuMI RGGWCCY 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 583
Psp5II RGGWCCY 1 cut(s) 473
PspPI GGNCC 3 cut(s) 169, 403, 473
PspPPI RGGWCCY 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 476
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 27, 66
RsaNI GTAC 2 cut(s) 26, 65
SacI GAGCTC 1 cut(s) 583
SatI GCNGC 9 cut(s) 129, 186, 222, 265, 321, 389, 413, 468, 610
Sau3AI GATC 2 cut(s) 334, 508
Sau96I GGNCC 3 cut(s) 169, 403, 473
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 1 cut(s) 583
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 2 cut(s) 370, 652
SsiI CCGC 6 cut(s) 74, 139, 219, 437, 467, 610
SstI GAGCTC 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 620
TaqI TCGA 2 cut(s) 50, 155
TasI AATT 2 cut(s) 370, 652
TatI WGTACW 2 cut(s) 25, 64
TauI GCSGC 2 cut(s) 470, 612
TfiI GAWTC 2 cut(s) 47, 598
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 7 cut(s) 128, 185, 221, 264, 320, 388, 412
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 60, 611, 674
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.