pycom17g14390
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004838
Physical Location & Seq
Reverse (-)
11914602 .. 11915306
705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g14390.1

Sequence Viewer

Length: 705 bp
ATGGCTAAGGGTCCTAATAATAAGATCACAGACAAAGATATTGCTAATGGGAAAAAGGAGAGGGAAGGTCCAAGAAGGGTTGAAATCAAGAGAGTTGAAGACAAGAACAAGCGTCACGTGACCTTCTCCAAGCGCAAAAGGGGTATTTTCAATAAAGCCGCGGAACTCAGCGTTTTGACTGGTGCAGAGACGGCCGCAATTGTCGTGTCAAGCAATGGCAAGGTTTTCTGCTTCGGAAGCCCCTCCCCTGACGCTGTCATTGACCGCTACCTTGGCGAAAATACCTCCTTACTACCTGCAGGTCAACCAGATAATCATCTCCAAAACAACAACATTCACCATTCTAGTAGTAAGAAACAAATAGAGGATTATGTGGAAGCTTCGAGACGCTTGAAGGAAGCGAAAGTACTGAAGGGTGGGAAGAATAGTAATAATAATGGAGGAGAAGGACGGGAAAGAGGGTGTTCTTATGGGTGGTGGGAGAGGCGGATTGGGATGATGAGTAGTTTGGAAGAATTAGAAGAGTACAGGGATGCCCTGTACAAGTTGAAACACAACGTGGAGGTTCGAACCAATCGGATGATTCGGGAAGCTAGTCCTTCCAATCACTTTTCCCTACTTTTGTTTATGGATGATATCTGGAGTTCTCCTGAATTAAGCCAGGGTCAAGGGTGCATGGCACCGGAATTTAATTTCTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

235

Amino Acids

26.43

Weight (kDa)

9.28

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 31 - 78 7.6e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 290, 304
AccB1I GGYRCC 1 cut(s) 679
AccII CGCG 1 cut(s) 161
AciI CCGC 5 cut(s) 159, 161, 195, 265, 487
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 1 cut(s) 431
AcvI CACGTG 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 559
AfaI GTAC 3 cut(s) 408, 527, 542
AgsI TTSAA 5 cut(s) 83, 98, 151, 394, 550
AjnI CCWGG 1 cut(s) 660
AluBI AGCT 2 cut(s) 380, 593
AluI AGCT 2 cut(s) 380, 593
Alw26I GTCTC 2 cut(s) 182, 379
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 686
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 11, 68
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 1 cut(s) 568
AvaII GGWCC 2 cut(s) 11, 68
BanI GGYRCC 1 cut(s) 679
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 662
BcoDI GTCTC 2 cut(s) 182, 379
BfaI CTAG 2 cut(s) 345, 594
BfmI CTRYAG 1 cut(s) 297
BfuAI ACCTGC 2 cut(s) 290, 304
BisI GCNGC 2 cut(s) 159, 195
BlsI GCNGC 2 cut(s) 160, 196
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 2 cut(s) 11, 68
BmgT120I GGNCC 2 cut(s) 11, 68
BmiI GGNNCC 2 cut(s) 12, 681
BmrFI CCNGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 661
Bpu10I CCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 568
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 159, 271, 661
BsaWI WCCGGW 1 cut(s) 682
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 662
BseDI CCNNGG 3 cut(s) 159, 271, 661
BseGI GGATG 4 cut(s) 501, 538, 585, 637
BseJI GATNNNNATC 1 cut(s) 315
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 456
BseX3I CGGCCG 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 679
BsiEI CGRYCG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 683
BsmAI GTCTC 2 cut(s) 182, 379
BsmBI CGTCTC 2 cut(s) 182, 379
BsnI GGCC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 5 cut(s) 159, 161, 195, 265, 487
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 12, 681
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 2 cut(s) 290, 304
BspT104I TTCGAA 1 cut(s) 568
BspT107I GGYRCC 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 159, 271, 661
BssMI GATC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 662
Bst6I CTCTTC 1 cut(s) 516
BstAUI TGTACA 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 568
BstDEI CTNAG 2 cut(s) 6, 167
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 4 cut(s) 501, 538, 585, 637
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 2 cut(s) 182, 379
BstMBI GATC 1 cut(s) 24
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 3 cut(s) 191, 237, 273
BstNI CCWGG 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 660
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 105
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 4 cut(s) 501, 538, 585, 637
BveI ACCTGC 2 cut(s) 290, 304
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 11, 68
Cfr42I CCGCGG 1 cut(s) 162
CseI GACGC 3 cut(s) 101, 260, 396
Csp6I GTAC 3 cut(s) 407, 526, 541
CviAII CATG 1 cut(s) 676
CviJI RGCY 7 cut(s) 5, 158, 194, 240, 380, 593, 660
CviKI_1 RGCY 7 cut(s) 5, 158, 194, 240, 380, 593, 660
CviQI GTAC 3 cut(s) 407, 526, 541
DdeI CTNAG 2 cut(s) 6, 167
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
DraIII CACNNNGTG 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
EciI GGCGGA 1 cut(s) 502
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 271
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 2 cut(s) 11, 68
Eco52I CGGCCG 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 431
Eco72I CACGTG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 660
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 2 cut(s) 182, 379
FaeI CATG 1 cut(s) 679
FaiI YATR 6 cut(s) 372, 471, 629, 677, 701, 703
FatI CATG 1 cut(s) 675
FauNDI CATATG 1 cut(s) 701
Fnu4HI GCNGC 2 cut(s) 159, 195
FokI GGATG 4 cut(s) 508, 545, 592, 644
Fsp4HI GCNGC 2 cut(s) 159, 195
FspBI CTAG 2 cut(s) 345, 594
GlaI GCGC 1 cut(s) 134
GluI GCNGC 2 cut(s) 159, 195
GsuI CTGGAG 1 cut(s) 661
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 683
HgaI GACGC 3 cut(s) 101, 260, 396
HhaI GCGC 1 cut(s) 135
Hin1II CATG 1 cut(s) 679
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 1 cut(s) 583
HpaII CCGG 1 cut(s) 683
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 236, 579
Hpy188III TCNNGA 5 cut(s) 88, 384, 587, 640, 650
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 7 cut(s) 59, 69, 133, 388, 406, 440, 609
HpyCH4IV ACGT 2 cut(s) 117, 558
HpyCH4V TGCA 3 cut(s) 185, 299, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 237, 273
HpyF3I CTNAG 2 cut(s) 6, 167
HpySE526I ACGT 2 cut(s) 117, 558
Hsp92II CATG 1 cut(s) 679
HspAI GCGC 1 cut(s) 133
KspI CCGCGG 1 cut(s) 162
Kzo9I GATC 1 cut(s) 24
LweI GCATC 1 cut(s) 523
MaeI CTAG 2 cut(s) 345, 594
MaeII ACGT 2 cut(s) 117, 558
MaeIII GTNAC 2 cut(s) 113, 118
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 110, 433, 524, 533, 688
MfeI CAATTG 1 cut(s) 198
MluCI AATT 5 cut(s) 198, 515, 653, 686, 691
MnlI CCTC 8 cut(s) 54, 253, 295, 358, 434, 452, 477, 556
MseI TTAA 2 cut(s) 656, 690
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 191, 237, 273
NdeI CATATG 1 cut(s) 701
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 679
NlaIV GGNNCC 2 cut(s) 12, 681
NmuCI GTSAC 2 cut(s) 113, 118
NspV TTCGAA 1 cut(s) 568
PfeI GAWTC 1 cut(s) 583
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 160, 196
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 660
PspCI CACGTG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 2 cut(s) 12, 681
PspPI GGNCC 2 cut(s) 11, 68
PspPPI RGGWCCY 1 cut(s) 11
PstI CTGCAG 1 cut(s) 301
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 3 cut(s) 408, 527, 542
RsaNI GTAC 3 cut(s) 407, 526, 541
SacII CCGCGG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 656, 690
SatI GCNGC 2 cut(s) 159, 195
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 11, 68
SbfI CCTGCAGG 1 cut(s) 301
ScaI AGTACT 1 cut(s) 408
ScrFI CCNGG 1 cut(s) 662
SdaI CCTGCAGG 1 cut(s) 301
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 1 cut(s) 297
Sfr303I CCGCGG 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 162
SinI GGWCC 2 cut(s) 11, 68
Sse8387I CCTGCAGG 1 cut(s) 301
Sse9I AATT 5 cut(s) 198, 515, 653, 686, 691
SsiI CCGC 5 cut(s) 159, 161, 195, 265, 487
SspMI CTAG 2 cut(s) 345, 594
StyD4I CCNGG 1 cut(s) 660
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 2 cut(s) 120, 561
TaqI TCGA 2 cut(s) 383, 568
TasI AATT 5 cut(s) 198, 515, 653, 686, 691
TatI WGTACW 3 cut(s) 406, 525, 540
TauI GCSGC 2 cut(s) 161, 197
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 2 cut(s) 656, 690
Tru9I TTAA 2 cut(s) 656, 690
TseFI GTSAC 2 cut(s) 113, 118
Tsp45I GTSAC 2 cut(s) 113, 118
TspDTI ATGAA 1 cut(s) 688
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 11, 68
XapI RAATTY 1 cut(s) 686
XspI CTAG 2 cut(s) 345, 594
ZrmI AGTACT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.