Rw0G022040

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01021
OG0004838
Physical Location & Seq
Reverse (-)
33263 .. 34388
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022040.1

Sequence Viewer

Length: 951 bp
ATGGCTCCCTTTGTTGCAGAGAGTACCAGCAATTCCATTGTCGAAATGAAGAAGGTAGAAGCACTTGACCACCGCCACGTCACTTTCTCCAAGCGCAAGAAAGGACTTTTCCAAAAAGCCGACCAACTCAGCAGCCTCACTGGCACCGAAATCGCGGTCGCGGTGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCGGCACCCCAAGCTGTGACGCCGTCACCGATCGTTACCTTGCCGGGTTTTCTTCTAACCAAAATGCCAATTGCATCAGTTGTCAAGACGATATTGGATCTATGAATGTGGAAAGCATTCCTTCGACGAGTTTAAACTGTTCCCAAAATGACAATGTCCATTATCAAAACAATGGCGCCGTAGTCGGATCTATGATAGATTCCCCCATTAGGGTTTTGGAGAAAAATATTTTGGATAACGGAAAGTTGGAATTAATGGCCCCTAATGGCAATGCCGATTATCAAAACGACAATACCGTCGTTGGACCTATAATCGTTGAAATCACGCCTTCCCGTTCAAACTTTCTCCAAAGCGACGGTGTAGTGGTCAGATCGAAGATAGTTGAAACGACTCCTTTGAGTTCGAGCTGTCCCGAAATTAGGGTTTTGGAGGACAATACAATGGGTGATGGATACTTGAATTTGATGAACGACACCGTTTTTCCTGTCAAGCCAGGCGATGGGGAGATGAGTGGGGAGATGATTGAGGAGATGATGAAAGAGAAAGACGACGTGCCGGGTTGTAATGAATTCATGACTGCCTTGATTAGGGTTTTACTTCCAACGACGACTTCAAATTACTATACCTCATTGTTGGTTATGGAGGATGAAGATGAACTTCTTATGGAAAATAGAGGGCTGGGGACTTGTCACTTCAACCCATATGGGGATTGTAGGTGTGGTCGTGTGGAGGCATATGCGATTAATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

316

Amino Acids

34.43

Weight (kDa)

4.51

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 23 - 67 8.5e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 494
AccB1I GGYRCC 3 cut(s) 143, 203, 374
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 2 cut(s) 155, 161
AciI CCGC 4 cut(s) 73, 155, 161, 183
AclWI GGATC 2 cut(s) 304, 394
AcsI RAATTY 2 cut(s) 658, 767
AcyI GRCGYC 2 cut(s) 219, 375
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 6 cut(s) 408, 409, 618, 698, 786, 904
AgsI TTSAA 6 cut(s) 518, 537, 584, 658, 813, 895
AjiI CACGTC 2 cut(s) 79, 751
AjnI CCWGG 1 cut(s) 691
AjuI GAANNNNNNNTTGG 4 cut(s) 413, 445, 793, 825
AluBI AGCT 2 cut(s) 213, 606
AluI AGCT 2 cut(s) 213, 606
AlwI GGATC 2 cut(s) 304, 394
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 658, 767
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AseI ATTAAT 2 cut(s) 452, 942
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 96, 377
AspS9I GGNCC 2 cut(s) 457, 503
AsuC2I CCSGG 2 cut(s) 244, 756
AsuHPI GGTGA 2 cut(s) 217, 656
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 3 cut(s) 143, 203, 374
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 641, 692
BceAI ACGGC 2 cut(s) 206, 362
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 644
BcnI CCSGG 2 cut(s) 244, 756
BfaI CTAG 1 cut(s) 949
BfoI RGCGCY 1 cut(s) 378
BfuI GTATCC 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 141
BisI GCNGC 2 cut(s) 133, 184
BlsI GCNGC 2 cut(s) 134, 185
Bme1390I CCNGG 3 cut(s) 244, 693, 756
Bme18I GGWCC 1 cut(s) 503
BmgBI CACGTC 2 cut(s) 79, 751
BmgT120I GGNCC 2 cut(s) 457, 503
BmiI GGNNCC 5 cut(s) 6, 145, 205, 376, 459
BmrFI CCNGG 3 cut(s) 244, 693, 756
BmsI GCATC 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 244, 756
BsaHI GRCGYC 2 cut(s) 219, 375
Bsc4I CCNNNNNNNGG 6 cut(s) 408, 409, 618, 698, 786, 904
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 693
BseGI GGATG 1 cut(s) 850
BseLI CCNNNNNNNGG 6 cut(s) 408, 409, 618, 698, 786, 904
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 740
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 877
Bsh1236I CGCG 2 cut(s) 155, 161
Bsh1285I CGRYCG 2 cut(s) 159, 232
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 3 cut(s) 143, 203, 374
BsiEI CGRYCG 2 cut(s) 159, 232
BsiSI CCGG 2 cut(s) 243, 755
BslFI GGGAC 2 cut(s) 594, 895
BslI CCNNNNNNNGG 6 cut(s) 408, 409, 618, 698, 786, 904
BsmFI GGGAC 2 cut(s) 594, 895
BsmI GAATGC 2 cut(s) 185, 315
BsnI GGCC 1 cut(s) 458
Bsp143I GATC 4 cut(s) 229, 296, 386, 569
BspACI CCGC 4 cut(s) 73, 155, 161, 183
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 2 cut(s) 155, 161
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 5 cut(s) 6, 145, 205, 376, 459
BspPI GGATC 2 cut(s) 304, 394
BspT107I GGYRCC 3 cut(s) 143, 203, 374
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 1 cut(s) 145
BssMI GATC 4 cut(s) 229, 296, 386, 569
BssNI GRCGYC 2 cut(s) 219, 375
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 4 cut(s) 338, 496, 557, 676
BstACI GRCGYC 2 cut(s) 219, 375
BstDEI CTNAG 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 784
BstF5I GGATG 1 cut(s) 850
BstFNI CGCG 2 cut(s) 155, 161
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 2 cut(s) 96, 377
BstKTI GATC 4 cut(s) 232, 299, 389, 572
BstMBI GATC 4 cut(s) 229, 296, 386, 569
BstMCI CGRYCG 2 cut(s) 159, 232
BstMWI GCNNNNNNNGC 2 cut(s) 141, 210
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 3 cut(s) 242, 691, 754
BstUI CGCG 2 cut(s) 155, 161
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 296, 386
BstYI RGATCY 2 cut(s) 296, 386
BsuI GTATCC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 711
BtrI CACGTC 2 cut(s) 79, 751
BtsCI GGATG 1 cut(s) 850
BtsIMutI CAGTG 1 cut(s) 138
CciI TCATGA 1 cut(s) 771
CfoI GCGC 2 cut(s) 96, 377
Cfr13I GGNCC 2 cut(s) 457, 503
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 772
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 128
DinI GGCGCC 1 cut(s) 376
DpnI GATC 4 cut(s) 231, 298, 388, 571
DpnII GATC 4 cut(s) 229, 296, 386, 569
DraI TTTAAA 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 494
DseDI GACNNNNNNGTC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 691
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
FaeI CATG 1 cut(s) 775
FalI AAGNNNNNCTT 4 cut(s) 304, 336, 840, 872
FaqI GGGAC 2 cut(s) 594, 895
FatI CATG 1 cut(s) 771
FauNDI CATATG 2 cut(s) 901, 934
Fnu4HI GCNGC 2 cut(s) 133, 184
FokI GGATG 1 cut(s) 857
Fsp4HI GCNGC 2 cut(s) 133, 184
FspBI CTAG 1 cut(s) 949
GlaI GCGC 2 cut(s) 95, 376
GluI GCNGC 2 cut(s) 133, 184
GsaI CCCAGC 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 243, 755
HgaI GACGC 1 cut(s) 227
HhaI GCGC 2 cut(s) 96, 377
Hin1I GRCGYC 2 cut(s) 219, 375
Hin1II CATG 1 cut(s) 775
Hin6I GCGC 2 cut(s) 94, 375
HinP1I GCGC 2 cut(s) 94, 375
HinfI GANTC 2 cut(s) 398, 589
HpaII CCGG 2 cut(s) 243, 755
HphI GGTGA 2 cut(s) 217, 656
Hpy188I TCNGA 3 cut(s) 178, 386, 569
Hpy188III TCNNGA 3 cut(s) 284, 611, 772
Hpy99I CGWCG 5 cut(s) 328, 500, 557, 752, 808
HpyAV CCTTC 3 cut(s) 46, 330, 537
HpyCH4III ACNGT 4 cut(s) 338, 496, 557, 676
HpyCH4IV ACGT 2 cut(s) 78, 750
HpyCH4V TGCA 2 cut(s) 17, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 210
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 2 cut(s) 78, 750
Hsp92I GRCGYC 2 cut(s) 219, 375
Hsp92II CATG 1 cut(s) 775
HspAI GCGC 2 cut(s) 94, 375
KasI GGCGCC 1 cut(s) 374
Kzo9I GATC 4 cut(s) 229, 296, 386, 569
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 40, 126, 172, 256, 678, 696, 705, 768, 863
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 949
MaeII ACGT 2 cut(s) 78, 750
MaeIII GTNAC 5 cut(s) 79, 215, 223, 233, 887
MalI GATC 4 cut(s) 231, 298, 388, 571
MboI GATC 4 cut(s) 229, 296, 386, 569
MboII GAAGA 4 cut(s) 61, 243, 586, 860
MfeI CAATTG 1 cut(s) 268
MflI RGATCY 2 cut(s) 296, 386
MluCI AATT 7 cut(s) 31, 268, 449, 615, 658, 767, 814
Mly113I GGCGCC 1 cut(s) 375
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 4 cut(s) 364, 426, 481, 824
MnlI CCTC 7 cut(s) 146, 622, 718, 835, 835, 866, 922
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 3 cut(s) 332, 452, 942
MspI CCGG 2 cut(s) 243, 755
MspR9I CCNGG 3 cut(s) 244, 693, 756
MssI GTTTAAAC 1 cut(s) 333
MunI CAATTG 1 cut(s) 268
Mva1269I GAATGC 2 cut(s) 185, 315
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 2 cut(s) 155, 161
MwoI GCNNNNNNNGC 2 cut(s) 141, 210
NarI GGCGCC 1 cut(s) 375
NciI CCSGG 2 cut(s) 244, 756
NdeI CATATG 2 cut(s) 901, 934
NdeII GATC 4 cut(s) 229, 296, 386, 569
NlaIII CATG 1 cut(s) 775
NlaIV GGNNCC 5 cut(s) 6, 145, 205, 376, 459
NmuCI GTSAC 4 cut(s) 79, 215, 223, 887
PagI TCATGA 1 cut(s) 771
PcsI WCGNNNNNNNCGW 4 cut(s) 165, 174, 225, 492
PctI GAATGC 2 cut(s) 185, 315
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 398
PflFI GACNNNGTC 2 cut(s) 221, 353
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 2 cut(s) 134, 185
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 1 cut(s) 583
PluTI GGCGCC 1 cut(s) 378
PmeI GTTTAAAC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 583
PshBI ATTAAT 2 cut(s) 452, 942
Psp6I CCWGG 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 877
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 5 cut(s) 6, 145, 205, 376, 459
PspPI GGNCC 2 cut(s) 457, 503
PsuI RGATCY 2 cut(s) 296, 386
PsyI GACNNNGTC 2 cut(s) 221, 353
PvuI CGATCG 1 cut(s) 232
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 332, 452, 942
SatI GCNGC 2 cut(s) 133, 184
Sau3AI GATC 4 cut(s) 229, 296, 386, 569
Sau96I GGNCC 2 cut(s) 457, 503
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 3 cut(s) 244, 693, 756
SetI ASST 9 cut(s) 57, 81, 215, 240, 508, 608, 753, 827, 917
SfaNI GCATC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 376
SinI GGWCC 1 cut(s) 503
Sse9I AATT 7 cut(s) 31, 268, 449, 615, 658, 767, 814
SsiI CCGC 4 cut(s) 73, 155, 161, 183
SspDI GGCGCC 1 cut(s) 374
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 949
StyD4I CCNGG 3 cut(s) 242, 691, 754
TaaI ACNGT 4 cut(s) 338, 496, 557, 676
TaiI ACGT 2 cut(s) 81, 753
TaqI TCGA 4 cut(s) 42, 323, 572, 602
TasI AATT 7 cut(s) 31, 268, 449, 615, 658, 767, 814
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 3 cut(s) 332, 452, 942
Tru9I TTAA 3 cut(s) 332, 452, 942
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 4 cut(s) 79, 215, 223, 887
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 4 cut(s) 79, 215, 223, 887
TspDTI ATGAA 8 cut(s) 62, 317, 680, 749, 760, 780, 861, 867
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 2 cut(s) 221, 353
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 503
VspI ATTAAT 2 cut(s) 452, 942
XagI CCTNNNNNAGG 1 cut(s) 784
XapI RAATTY 2 cut(s) 658, 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.