Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004838

Physical Location & Seq

Genomic Coordinates Reverse (-)

2384582 .. 2385577

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G032000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTAAGAGGGGTGCTGATGAGAGTGAGATCACAAACGATGACAATATCAATGGGAAAAGACAGAGAACTGATCCTACCATGGTTAAGATGGTTGCTGCTGAGAGTGAGATCACAAACGATGACAATATCAATGGGAAAAGGCAGATAACTGATCCTACCATGGCTAAGATGGGTGCTGCTGAGATTGAGATCACAAACGATGACAATATCAATGGGAAAAGGCAGATAACTGATCCTACCATGGCTAAGATGGGTGCTTCTGAGAGTGAGATCACAAACGATAACAATATCAATGGGAAAAGGCCGAGAACTGATCCTACCATGGCTAAGAGGGGTGCTGCTGAGATTGAGATCACAAACGATAACAATATCAATGGGAAAAGGCCAAGCAAACGTCAAAGAAGGGTTGAAATCAAGAAAGTTGAAGAGAAGAACAAGCGTCACGTGACCTTCTCCAAGCGCAAAAGGGGTCTCTTCAACAAAGCCGCCGAGCTCAGCGTTTTGTGCGGTGCAGAGACAGCGGGGATCGTCGTGTCTAGCAACGGCAAGGTGTTCTGCTTCGGCAGCCCCTCCGCTGATACCGTCATCCACCGCTACCTCGGCCACAATGCCTCCTCATTATTACATGCAGGTCAGCCAGATATTCATCATGTAAACGGCGAAGTTCGCTATTGTCCTTACAATATTTCTTCGCATGTGAGTATAATGCGCAATGGTAATAAACAAGTAGAGGATTATATGGAAGCTAGGAGGCACATGGAGGTAGAGAAGATCAAGCGTGTGAAGAATAATAATACTGACAATATTGATGATATTGATAACAATATTGATGGAGAAAGAGGAGGATGGTGTCATTGGTGGTGGGAGAAGCCAATTGAGATGACGACAAGTTTGGAGGAGTTTGAGGAATACATGGCAGCCTTGCGCCAGTTGAAACACAATGTTGAAGTTCGAACCAATCAAATGGTTATCAATGTTGGGTACAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

332

Amino Acids

37.44

Weight (kDa)

7.15

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25061 FvH4_6g35390 FvH4_6g35690
malus_domestica	MD09G1170500.v1.1 MD09G1176200.v1.1 MD17G1150800.v1.1
prunus_persica	Prupe.3G032000_v2.0.a1 Prupe.3G035200_v2.0.a1
pyrus_communis	pycom09g09140 pycom17g14390
rosa_chinensis	RchiOBHm_Chr2g0147681
rosa_laevigata	RLG00000020226 RLG00000020270
rosa_multiflora	Rmu_sc0000308.1_g000012 Rmu_sc0000566.1_g000017
rosa_roxburghii	Rroxscaffold_2G00099390 Rroxscaffold_2G00099860
rosa_rugosa	Rorug02G0397400 Rorug02G0400800
rosa_samantha	Rh2AG453800 Rh2AG453900 Rh2AG458200 Rh2BG466600 Rh2BG470900 Rh2CG440900 Rh2CG441000 Rh2CG445600 Rh2DG475500 Rh2DG480200
rosa_wichuraiana	Rw0G022040 Rw2G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	713
Acc36I	ACCTGC	1 cut(s)	623
AciI	CCGC	5 cut(s)	489, 510, 524, 576, 595
AclWI	GGATC	5 cut(s)	68, 149, 230, 311, 536
AcoI	YGGCCR	1 cut(s)	604
AcvI	CACGTG	1 cut(s)	448
AfaI	GTAC	1 cut(s)	986
AgsI	TTSAA	5 cut(s)	413, 428, 481, 937, 950
AluBI	AGCT	2 cut(s)	496, 749
AluI	AGCT	2 cut(s)	496, 749
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	2 cut(s)	479, 512
AlwI	GGATC	5 cut(s)	68, 149, 230, 311, 536
AoxI	GGCC	3 cut(s)	305, 386, 604
ApeKI	GCWGC	5 cut(s)	98, 179, 341, 567, 920
ArsI	GACNNNNNNTTYG	2 cut(s)	877, 909
AspLEI	GCGC	3 cut(s)	465, 714, 930
AsuII	TTCGAA	1 cut(s)	955
BaeI	ACNNNNGTAYC	1 cut(s)	976
BanII	GRGCYC	1 cut(s)	498
BbrPI	CACGTG	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	5 cut(s)	85, 166, 328, 579, 932
BccI	CCATC	5 cut(s)	85, 166, 247, 827, 843
BceAI	ACGGC	2 cut(s)	562, 676
BcoDI	GTCTC	2 cut(s)	479, 512
BfaI	CTAG	2 cut(s)	540, 750
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	6 cut(s)	99, 180, 342, 489, 568, 921
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	6 cut(s)	100, 181, 343, 490, 569, 922
Bpu1102I	GCTNAGC	1 cut(s)	497
Bpu14I	TTCGAA	1 cut(s)	955
BsaAI	YACGTR	1 cut(s)	448
BsaBI	GATNNNNATC	3 cut(s)	191, 353, 648
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	5 cut(s)	81, 162, 243, 324, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bse1I	ACTGG	1 cut(s)	931
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	3 cut(s)	191, 353, 648
BseDI	CCNNGG	5 cut(s)	81, 162, 243, 324, 601
BseGI	GGATG	2 cut(s)	588, 854
BseJI	GATNNNNATC	3 cut(s)	191, 353, 648
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	5 cut(s)	93, 174, 255, 336, 511
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	3 cut(s)	607, 858, 914
BseXI	GCAGC	5 cut(s)	85, 166, 328, 579, 932
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	307, 388, 606
BsiHKAI	GWGCWC	1 cut(s)	498
BsmAI	GTCTC	2 cut(s)	479, 512
BsnI	GGCC	3 cut(s)	307, 388, 606
Bso31I	GGTCTC	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	955
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp19I	CCATGG	4 cut(s)	81, 162, 243, 324
BspACI	CCGC	5 cut(s)	489, 510, 524, 576, 595
BspANI	GGCC	3 cut(s)	307, 388, 606
BspCNI	CTCAG	5 cut(s)	94, 175, 256, 337, 510
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	5 cut(s)	68, 149, 230, 311, 536
BspT104I	TTCGAA	1 cut(s)	955
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	931
BssECI	CCNNGG	5 cut(s)	81, 162, 243, 324, 601
BssT1I	CCWWGG	4 cut(s)	81, 162, 243, 324
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	2 cut(s)	423, 482
BstBAI	YACGTR	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	955
BstDEI	CTNAG	9 cut(s)	6, 102, 168, 183, 249, 264, 330, 345, 497
BstDSI	CCRYGG	4 cut(s)	81, 162, 243, 324
BstF5I	GGATG	2 cut(s)	588, 854
BstHHI	GCGC	3 cut(s)	465, 714, 930
BstMAI	GTCTC	2 cut(s)	479, 512
BstMWI	GCNNNNNNNGC	5 cut(s)	507, 521, 567, 603, 669
BstNSI	RCATGY	2 cut(s)	632, 701
BstV1I	GCAGC	5 cut(s)	85, 166, 328, 579, 932
BstXI	CCANNNNNNTGG	1 cut(s)	967
BsuRI	GGCC	3 cut(s)	307, 388, 606
BtgI	CCRYGG	4 cut(s)	81, 162, 243, 324
BtsCI	GGATG	2 cut(s)	588, 854
BveI	ACCTGC	1 cut(s)	623
CfoI	GCGC	3 cut(s)	465, 714, 930
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	985
CviAII	CATG	9 cut(s)	82, 163, 244, 325, 629, 653, 698, 760, 916
CviQI	GTAC	1 cut(s)	985
DdeI	CTNAG	9 cut(s)	6, 102, 168, 183, 249, 264, 330, 345, 497
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	423, 482
EarI	CTCTTC	2 cut(s)	423, 482
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	4 cut(s)	81, 162, 243, 324
Eco24I	GRGCYC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	496
Eco72I	CACGTG	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	496
EcoT14I	CCWWGG	4 cut(s)	81, 162, 243, 324
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	4 cut(s)	81, 162, 243, 324
FaeI	CATG	9 cut(s)	85, 166, 247, 328, 632, 656, 701, 763, 919
FatI	CATG	9 cut(s)	81, 162, 243, 324, 628, 652, 697, 759, 915
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	6 cut(s)	99, 180, 342, 489, 568, 921
FokI	GGATG	2 cut(s)	575, 861
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	6 cut(s)	99, 180, 342, 489, 568, 921
FspBI	CTAG	2 cut(s)	540, 750
FspI	TGCGCA	1 cut(s)	713
GlaI	GCGC	3 cut(s)	464, 713, 929
GluI	GCNGC	6 cut(s)	99, 180, 342, 489, 568, 921
HaeIII	GGCC	3 cut(s)	307, 388, 606
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	465, 714, 930
Hin1II	CATG	9 cut(s)	85, 166, 247, 328, 632, 656, 701, 763, 919
Hin6I	GCGC	3 cut(s)	463, 712, 928
HinP1I	GCGC	3 cut(s)	463, 712, 928
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	399, 463
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	2 cut(s)	397, 447
HpyCH4V	TGCA	2 cut(s)	515, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	507, 521, 567, 603, 669
HpyF3I	CTNAG	9 cut(s)	6, 102, 168, 183, 249, 264, 330, 345, 497
HpySE526I	ACGT	2 cut(s)	397, 447
Hsp92II	CATG	9 cut(s)	85, 166, 247, 328, 632, 656, 701, 763, 919
HspAI	GCGC	3 cut(s)	463, 712, 928
LpnPI	CCDG	3 cut(s)	618, 654, 944
Lsp1109I	GCAGC	5 cut(s)	85, 166, 328, 579, 932
MaeI	CTAG	2 cut(s)	540, 750
MaeII	ACGT	2 cut(s)	397, 447
MaeIII	GTNAC	2 cut(s)	443, 448
MboII	GAAGA	6 cut(s)	440, 445, 469, 684, 784, 799
MfeI	CAATTG	2 cut(s)	876, 988
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	2 cut(s)	876, 988
MseI	TTAA	2 cut(s)	87, 994
MspA1I	CMGCKG	2 cut(s)	524, 578
MunI	CAATTG	2 cut(s)	876, 988
MwoI	GCNNNNNNNGC	5 cut(s)	507, 521, 567, 603, 669
NcoI	CCATGG	4 cut(s)	81, 162, 243, 324
NlaIII	CATG	9 cut(s)	85, 166, 247, 328, 632, 656, 701, 763, 919
NmeAIII	GCCGAG	3 cut(s)	333, 517, 582
NmuCI	GTSAC	2 cut(s)	443, 448
NsbI	TGCGCA	1 cut(s)	713
NspI	RCATGY	2 cut(s)	632, 701
NspV	TTCGAA	1 cut(s)	955
PkrI	GCNGC	6 cut(s)	100, 181, 343, 490, 569, 922
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	498
PspCI	CACGTG	1 cut(s)	448
PsrI	GAACNNNNNNTAC	4 cut(s)	61, 93, 304, 336
RsaI	GTAC	1 cut(s)	986
RsaNI	GTAC	1 cut(s)	985
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	87, 994
SatI	GCNGC	6 cut(s)	99, 180, 342, 489, 568, 921
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	9 cut(s)	400, 450, 455, 498, 555, 603, 637, 751, 768
SfuI	TTCGAA	1 cut(s)	955
Sse9I	AATT	2 cut(s)	876, 988
SsiI	CCGC	5 cut(s)	489, 510, 524, 576, 595
SspI	AATATT	3 cut(s)	688, 808, 829
SspMI	CTAG	2 cut(s)	540, 750
SstI	GAGCTC	1 cut(s)	498
StyI	CCWWGG	4 cut(s)	81, 162, 243, 324
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	2 cut(s)	400, 450
TaqI	TCGA	1 cut(s)	955
TasI	AATT	2 cut(s)	876, 988
TauI	GCSGC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	87, 994
Tru9I	TTAA	2 cut(s)	87, 994
TseFI	GTSAC	2 cut(s)	443, 448
TseI	GCWGC	5 cut(s)	98, 179, 341, 567, 920
Tsp45I	GTSAC	2 cut(s)	443, 448
TspDTI	ATGAA	1 cut(s)	638
XceI	RCATGY	2 cut(s)	632, 701
XcmI	CCANNNNNNNNNTGG	3 cut(s)	88, 169, 250
XspI	CTAG	2 cut(s)	540, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.