Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Forward (+)

17777318 .. 17779587

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGAGTTGAGGATTCTTCTCTCGGAACCATGTCGTCGGAGGATAAAGTTGATGCCTTGCTGGAGGCCGCAAGATATGATGATATGGAAGATATTACGTCCTTAGTATCCCAAGGTGTTTCTCTTGATTCCAAGGATTCCCAGGGCCGAACAGCACTACACATGGCTTGTGCTAATGGTCATCTCGATGTTGTGGAGTATCTTATCAGTAGAGGAGTGGATCTGAATGCTACAAATGTGGAGATGAATACACCCCTACATTGGGCCTGCCTGAATGGACATATTGAGGTGGTTAAGAAATTGATCTTGGCAGGAGCTACTGTAGGTGTCCTGAACAGCTATGAGAAGAGTCCAATTGATGAAGCTGTGAGTGGGCAAAAAATGGATGTTATTGATGCCATTAATGAATCAGTGGCCCAACTAGAGCTTACTGGCATCAGAGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

150

Amino Acids

15.92

Weight (kDa)

4.39

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	20 - 108	1.3e-20	Ankyrin repeats (3 copies)
Ank_4	PF13637	22 - 69	2.9e-10	Ankyrin repeats (many copies)
Ank_5	PF13857	35 - 87	2.4e-12	Ankyrin repeats (many copies)
Ank	PF00023	48 - 79	1.1e-10	Ankyrin repeat
Ank_3	PF13606	49 - 77	7.7e-09	Ankyrin repeat
Ank_4	PF13637	60 - 102	6.4e-12	Ankyrin repeats (many copies)
Ank_2	PF12796	75 - 127	3.9e-06	Ankyrin repeats (3 copies)
Ank	PF00023	83 - 112	2.8e-07	Ankyrin repeat
Ank_3	PF13606	83 - 108	4.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	261, 262
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	4 cut(s)	317, 339, 365, 427
AluI	AGCT	4 cut(s)	317, 339, 365, 427
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	4 cut(s)	66, 145, 264, 414
AseI	ATTAAT	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	145, 264, 415
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	145, 264, 415
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	3 cut(s)	43, 385, 444
BpmI	CTGGAG	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	112, 132, 141, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 262
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	112, 132, 141, 142
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	261, 262
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	68, 147, 266, 416
BslI	CCNNNNNNNGG	2 cut(s)	261, 262
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	68, 147, 266, 416
Bsp143I	GATC	2 cut(s)	220, 303
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	4 cut(s)	68, 147, 266, 416
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	112, 132, 141, 142
BssMI	GATC	2 cut(s)	220, 303
BssT1I	CCWWGG	2 cut(s)	112, 132
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	2 cut(s)	223, 306
BstMBI	GATC	2 cut(s)	220, 303
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	4 cut(s)	68, 147, 266, 416
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	145, 264, 415
CviAII	CATG	2 cut(s)	31, 163
CviJI	RGCY	9 cut(s)	68, 147, 167, 266, 317, 339, 365, 416, 427
CviKI_1	RGCY	9 cut(s)	68, 147, 167, 266, 317, 339, 365, 416, 427
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	222, 305
DpnII	GATC	2 cut(s)	220, 303
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	112, 132
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	112, 132
ErhI	CCWWGG	2 cut(s)	112, 132
FaeI	CATG	2 cut(s)	34, 166
FaiI	YATR	6 cut(s)	32, 78, 86, 164, 282, 342
FatI	CATG	2 cut(s)	30, 162
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	4 cut(s)	68, 147, 266, 416
Hin1II	CATG	2 cut(s)	34, 166
HinfI	GANTC	5 cut(s)	14, 128, 137, 349, 407
Hpy188I	TCNGA	4 cut(s)	26, 40, 225, 440
Hpy188III	TCNNGA	3 cut(s)	125, 185, 331
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	34, 166
Kzo9I	GATC	2 cut(s)	220, 303
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	8 cut(s)	47, 128, 155, 280, 284, 297, 344, 417
LweI	GCATC	3 cut(s)	43, 385, 444
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	98
MalI	GATC	2 cut(s)	222, 305
MboI	GATC	2 cut(s)	220, 303
MboII	GAAGA	3 cut(s)	9, 101, 358
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	2 cut(s)	299, 354
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	4, 34, 58, 206, 280
MseI	TTAA	2 cut(s)	294, 402
MslI	CAYNNNNRTG	2 cut(s)	186, 440
MspR9I	CCNGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	220, 303
NlaIII	CATG	2 cut(s)	34, 166
NlaIV	GGNNCC	1 cut(s)	28
PasI	CCCWGGG	1 cut(s)	142
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	4 cut(s)	14, 128, 137, 407
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	145, 264, 415
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	186, 440
SaqAI	TTAA	2 cut(s)	294, 402
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	220, 303
Sau96I	GGNCC	3 cut(s)	145, 264, 415
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	8 cut(s)	101, 118, 291, 319, 328, 341, 367, 429
SfaNI	GCATC	3 cut(s)	43, 385, 444
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	2 cut(s)	186, 440
Sse9I	AATT	2 cut(s)	299, 354
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	112, 132
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	299, 354
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	4 cut(s)	14, 128, 137, 407
Tru1I	TTAA	2 cut(s)	294, 402
Tru9I	TTAA	2 cut(s)	294, 402
TscAI	CASTG	1 cut(s)	417
TspDTI	ATGAA	3 cut(s)	260, 375, 420
TspRI	CASTG	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	402
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.