Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Reverse (-)

18930170 .. 18933578

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAGGCTCCTCCTTCGACCATGTCAAGCTTAACTTTGATGGCTCGGTTGCATCTAATGGTCAAGTCGCTTTAGGCTTTGTCATACGAATTCACGTAGTTCCCCTAATTGCGGATGGAGCTCACGGCTTGAAGTCTGCTAGTGTTCCCATTGCGAATGCTCGCCGCTTAAAGATGTTCTTCTCGCTGCCAAAAGATTCAACCATCCCAATGTCTTGTATTGCTGCTAATTTTGGATCCATCACATTTTTGTACATTCTCCGCAAGGCTAATTTCTTGGTAGATACCGATTCTCCAGTTGAGTCCTTGCTGGAGGCTGCAAGATATGATGACATGGAAGTCATTACGTCCTTAGTATCAGATGGTGTTTCTCTTGATTCTAAGGATTCCCAGGGCCGAACAGCACTACACATGGCTTCTGCTAATGGTCATCTTGACATTGTGGAGTATCTTATCAGTAGAGGAGTGGATCTTAATGCTTCAAATGCGGAGATGAATACACCCCTACATTGGGCATGCCTGAATGGACGTGTCGAGGTGGTTAAGAAATTGATCTTGGCGGGAGCTAATGTAGGTGTACTAAACAGCTATGAGAAGAGCCCAATTGATGAAGCTTTGAGTGGGCAAAAGATGGATGTTATTGATGCCATTAATGAATCAGTGGCCCAAGTAGAGCTTACTGGCATCAGAGTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

232

Amino Acids

24.85

Weight (kDa)

5.18

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	74 - 161	2.1e-12	Ankyrin repeats (3 copies)
Ank_2	PF12796	103 - 192	1.1e-19	Ankyrin repeats (3 copies)
Ank_4	PF13637	104 - 152	3.8e-11	Ankyrin repeats (many copies)
Ank_5	PF13857	118 - 170	1.8e-11	Ankyrin repeats (many copies)
Ank	PF00023	131 - 162	1.5e-09	Ankyrin repeat
Ank_3	PF13606	132 - 160	2.9e-07	Ankyrin repeat
Ank_4	PF13637	143 - 185	2.1e-11	Ankyrin repeats (many copies)
Ank	PF00023	166 - 195	2.4e-07	Ankyrin repeat
Ank_3	PF13606	166 - 191	4.4e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AciI	CCGC	5 cut(s)	113, 166, 262, 488, 560
AclWI	GGATC	3 cut(s)	231, 244, 477
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	2 cut(s)	254, 579
AfiI	CCNNNNNNNGG	3 cut(s)	112, 510, 511
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	133, 201, 483
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	6 cut(s)	31, 122, 566, 588, 614, 676
AluI	AGCT	6 cut(s)	31, 122, 566, 588, 614, 676
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	3 cut(s)	231, 244, 477
AoxI	GGCC	2 cut(s)	394, 663
ApeKI	GCWGC	3 cut(s)	187, 224, 317
ApoI	RAATTY	1 cut(s)	90
AseI	ATTAAT	1 cut(s)	651
AspS9I	GGNCC	2 cut(s)	394, 664
BamHI	GGATCC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	124, 602
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	174, 211, 304
BccI	CCATC	6 cut(s)	35, 110, 212, 248, 356, 625
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	2 cut(s)	141, 697
BisI	GCNGC	4 cut(s)	166, 188, 225, 318
BlsI	GCNGC	4 cut(s)	167, 189, 226, 319
Bme1390I	CCNGG	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	394, 664
BmiI	GGNNCC	2 cut(s)	10, 238
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	3 cut(s)	62, 634, 693
BpmI	CTGGAG	2 cut(s)	279, 332
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	390, 391
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 510, 511
Bse1I	ACTGG	2 cut(s)	296, 685
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	390, 391
BseGI	GGATG	3 cut(s)	121, 204, 640
BseLI	CCNNNNNNNGG	3 cut(s)	112, 510, 511
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	296, 685
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	3 cut(s)	174, 211, 304
BshFI	GGCC	2 cut(s)	396, 665
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	112, 510, 511
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	396, 665
Bsp1286I	GDGCHC	2 cut(s)	124, 602
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	236, 469, 552
BspACI	CCGC	5 cut(s)	113, 166, 262, 488, 560
BspANI	GGCC	2 cut(s)	396, 665
BspLI	GGNNCC	2 cut(s)	10, 238
BspPI	GGATC	3 cut(s)	231, 244, 477
BspQI	GCTCTTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	296, 685
BssECI	CCNNGG	2 cut(s)	390, 391
BssMI	GATC	3 cut(s)	236, 469, 552
Bst2UI	CCWGG	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	163, 517
BstDEI	CTNAG	2 cut(s)	352, 381
BstF5I	GGATG	3 cut(s)	121, 204, 640
BstKTI	GATC	3 cut(s)	239, 472, 555
BstMBI	GATC	3 cut(s)	236, 469, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 485
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	174, 211, 304
BstX2I	RGATCY	2 cut(s)	236, 469
BstYI	RGATCY	2 cut(s)	236, 469
BsuRI	GGCC	2 cut(s)	396, 665
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	121, 204, 640
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	163, 517
Cfr13I	GGNCC	2 cut(s)	394, 664
Csp6I	GTAC	2 cut(s)	253, 578
CviAII	CATG	4 cut(s)	23, 334, 412, 516
CviQI	GTAC	2 cut(s)	253, 578
DdeI	CTNAG	2 cut(s)	352, 381
DpnI	GATC	3 cut(s)	238, 471, 554
DpnII	GATC	3 cut(s)	236, 469, 552
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	2 cut(s)	124, 602
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	390
EcoT38I	GRGCYC	2 cut(s)	124, 602
FaeI	CATG	4 cut(s)	26, 337, 415, 519
FaiI	YATR	7 cut(s)	24, 86, 327, 335, 413, 517, 591
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 164, 196, 660, 692
FatI	CATG	4 cut(s)	22, 333, 411, 515
FauI	CCCGC	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	166, 188, 225, 318
FokI	GGATG	3 cut(s)	128, 191, 647
FriOI	GRGCYC	2 cut(s)	124, 602
Fsp4HI	GCNGC	4 cut(s)	166, 188, 225, 318
FspBI	CTAG	2 cut(s)	141, 697
GluI	GCNGC	4 cut(s)	166, 188, 225, 318
GsuI	CTGGAG	2 cut(s)	279, 332
HaeIII	GGCC	2 cut(s)	396, 665
Hin1II	CATG	4 cut(s)	26, 337, 415, 519
HindIII	AAGCTT	2 cut(s)	29, 612
HinfI	GANTC	6 cut(s)	197, 290, 302, 377, 386, 656
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	2 cut(s)	361, 689
Hpy188III	TCNNGA	2 cut(s)	374, 434
Hpy8I	GTNNAC	1 cut(s)	578
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	3 cut(s)	96, 347, 529
HpyCH4V	TGCA	2 cut(s)	53, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 485
HpyF3I	CTNAG	2 cut(s)	352, 381
HpySE526I	ACGT	3 cut(s)	96, 347, 529
Hsp92II	CATG	4 cut(s)	26, 337, 415, 519
Kzo9I	GATC	3 cut(s)	236, 469, 552
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	3 cut(s)	14, 119, 563
LpnPI	CCDG	6 cut(s)	296, 309, 377, 404, 533, 666
Lsp1109I	GCAGC	3 cut(s)	174, 211, 304
LweI	GCATC	3 cut(s)	62, 634, 693
MaeI	CTAG	2 cut(s)	141, 697
MaeII	ACGT	3 cut(s)	96, 347, 529
MalI	GATC	3 cut(s)	238, 471, 554
MboI	GATC	3 cut(s)	236, 469, 552
MboII	GAAGA	2 cut(s)	172, 607
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	2 cut(s)	236, 469
MhlI	GDGCHC	2 cut(s)	124, 602
MluCI	AATT	6 cut(s)	90, 108, 229, 271, 548, 603
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	4 cut(s)	22, 307, 455, 529
MseI	TTAA	5 cut(s)	33, 170, 474, 543, 651
MslI	CAYNNNNRTG	2 cut(s)	209, 689
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	119, 485
NdeII	GATC	3 cut(s)	236, 469, 552
NlaIII	CATG	4 cut(s)	26, 337, 415, 519
NlaIV	GGNNCC	2 cut(s)	10, 238
NspI	RCATGY	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	519
PasI	CCCWGGG	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	590
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	5 cut(s)	197, 290, 377, 386, 656
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	167, 189, 226, 319
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	10, 238
PspPI	GGNCC	2 cut(s)	394, 664
PsuI	RGATCY	2 cut(s)	236, 469
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	254, 579
RsaNI	GTAC	2 cut(s)	253, 578
RseI	CAYNNNNRTG	2 cut(s)	209, 689
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	5 cut(s)	33, 170, 474, 543, 651
SatI	GCNGC	4 cut(s)	166, 188, 225, 318
Sau3AI	GATC	3 cut(s)	236, 469, 552
Sau96I	GGNCC	2 cut(s)	394, 664
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	124, 602
SfaNI	GCATC	3 cut(s)	62, 634, 693
SmiMI	CAYNNNNRTG	2 cut(s)	209, 689
SphI	GCATGC	1 cut(s)	519
Sse9I	AATT	6 cut(s)	90, 108, 229, 271, 548, 603
SsiI	CCGC	5 cut(s)	113, 166, 262, 488, 560
SspMI	CTAG	2 cut(s)	141, 697
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	390
TaiI	ACGT	3 cut(s)	99, 350, 532
TaqI	TCGA	2 cut(s)	18, 534
TasI	AATT	6 cut(s)	90, 108, 229, 271, 548, 603
TatI	WGTACW	2 cut(s)	252, 577
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	197, 290, 377, 386, 656
Tru1I	TTAA	5 cut(s)	33, 170, 474, 543, 651
Tru9I	TTAA	5 cut(s)	33, 170, 474, 543, 651
TscAI	CASTG	1 cut(s)	666
TseI	GCWGC	3 cut(s)	187, 224, 317
TspDTI	ATGAA	3 cut(s)	509, 624, 669
TspRI	CASTG	1 cut(s)	666
Tth111I	GACNNNGTC	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	2 cut(s)	141, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.