Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Forward (+)

29851928 .. 29854420

Gene Structure 2493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAAGGTGCCAGCGCCAAAATGGGACAAGAGGCAACTGCACTTGAGGATTCTCCAGTTGAGTCCTTGCTGCAGGCTGCAAGATATGATGACATGGAAGACATTACGTCGTTAGTATCCGATGGTGTTTCTCTTGATTCTAAGGATTCCCAGGGCCGAACAGCACTACACATGGCTTCTGCTAATGGTCATCTTGACATTGTGGAGTATCTTATCAGTAGAGGAGTGGATCTTAATGCTTCAAATGCGGAGATGAATACACCCCTACATTGGGCCTGCCTGAATGGACATGTCGAGGTGGTTAAGAAATTGATCTTGGCGGGAGCTAATGTAGGTGTACTAAACAGCTATGAGAAGAGCCCAATTGATGAAGCTTTGAGTGGGCAAAAGATGGATGTTATTGATGCCATTAATGAATCAGTGGCCCAAGTAGAGCTTACTGGCATCAGAGTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

152

Amino Acids

16.14

Weight (kDa)

4.44

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	23 - 112	3.2e-20	Ankyrin repeats (3 copies)
Ank_4	PF13637	24 - 72	8e-10	Ankyrin repeats (many copies)
Ank_5	PF13857	38 - 90	1.4e-11	Ankyrin repeats (many copies)
Ank	PF00023	51 - 82	7.4e-10	Ankyrin repeat
Ank_3	PF13606	52 - 80	1.5e-07	Ankyrin repeat
Ank_4	PF13637	63 - 105	4e-12	Ankyrin repeats (many copies)
Ank	PF00023	86 - 115	1.3e-08	Ankyrin repeat
Ank_3	PF13606	86 - 111	1.8e-06	Ankyrin repeat
Ank_5	PF13857	86 - 125	1e-05	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	2 cut(s)	248, 320
AclWI	GGATC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	270, 271
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	243
AhdI	GACNNNNNGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	4 cut(s)	326, 348, 374, 436
AluI	AGCT	4 cut(s)	326, 348, 374, 436
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	3 cut(s)	154, 273, 423
ApeKI	GCWGC	2 cut(s)	70, 77
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	154, 273, 424
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	57, 64
BccI	CCATC	2 cut(s)	116, 385
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	71, 78
BlsI	GCNGC	2 cut(s)	72, 79
Bme1390I	CCNGG	1 cut(s)	152
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	154, 273, 424
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	394, 453
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	150, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 271
Bse1I	ACTGG	2 cut(s)	56, 445
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	150, 151
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	270, 271
BseNI	ACTGG	2 cut(s)	56, 445
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	57, 64
BsgI	GTGCAG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	156, 275, 425
BshNI	GGYRCC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	270, 271
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	156, 275, 425
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	229, 312
BspACI	CCGC	2 cut(s)	248, 320
BspANI	GGCC	3 cut(s)	156, 275, 425
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	56, 445
BssECI	CCNNGG	2 cut(s)	150, 151
BssMI	GATC	2 cut(s)	229, 312
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	350
BstC8I	GCNNGC	3 cut(s)	13, 75, 277
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	232, 315
BstMBI	GATC	2 cut(s)	229, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	57, 64
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	156, 275, 425
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	13, 75, 277
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	154, 273, 424
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	3 cut(s)	94, 172, 290
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	231, 314
DpnII	GATC	2 cut(s)	229, 312
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	350
Eam1105I	GACNNNNNGTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	362
FaeI	CATG	3 cut(s)	97, 175, 293
FaiI	YATR	5 cut(s)	87, 95, 173, 291, 351
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	93, 171, 289
FauI	CCCGC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	71, 78
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	71, 78
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	71, 78
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	156, 275, 425
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	97, 175, 293
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	5 cut(s)	50, 62, 137, 146, 416
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	121, 449
Hpy188III	TCNNGA	2 cut(s)	134, 194
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	4, 41, 73, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	97, 175, 293
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	229, 312
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	8 cut(s)	25, 59, 69, 137, 164, 289, 293, 426
Lsp1109I	GCAGC	2 cut(s)	57, 64
LweI	GCATC	2 cut(s)	394, 453
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	1 cut(s)	107
MalI	GATC	2 cut(s)	231, 314
MboI	GATC	2 cut(s)	229, 312
MboII	GAAGA	2 cut(s)	110, 367
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	2 cut(s)	308, 363
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	25, 40, 215, 289
MseI	TTAA	3 cut(s)	234, 303, 411
MslI	CAYNNNNRTG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	229, 312
NlaIII	CATG	3 cut(s)	97, 175, 293
NlaIV	GGNNCC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	293
PasI	CCCWGGG	1 cut(s)	151
PciI	ACATGT	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	350
PfeI	GAWTC	4 cut(s)	50, 137, 146, 416
PkrI	GCNGC	2 cut(s)	72, 79
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	3 cut(s)	154, 273, 424
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	234, 303, 411
SatI	GCNGC	2 cut(s)	71, 78
Sau3AI	GATC	2 cut(s)	229, 312
Sau96I	GGNCC	3 cut(s)	154, 273, 424
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	8 cut(s)	10, 110, 300, 328, 337, 350, 376, 438
SfaNI	GCATC	2 cut(s)	394, 453
SfcI	CTRYAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	308, 363
SsiI	CCGC	2 cut(s)	248, 320
SspMI	CTAG	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	308, 363
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	4 cut(s)	50, 137, 146, 416
Tru1I	TTAA	3 cut(s)	234, 303, 411
Tru9I	TTAA	3 cut(s)	234, 303, 411
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	2 cut(s)	70, 77
TspDTI	ATGAA	3 cut(s)	269, 384, 429
TspRI	CASTG	1 cut(s)	426
VspI	ATTAAT	1 cut(s)	411
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.