RLG00000023289

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006700
Physical Location & Seq
Reverse (-)
21206028 .. 21207661
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023289

Sequence Viewer

Length: 543 bp
ATGTTCTTGTTCGACCTTCGAACCCACCTCCACTTCTCTCCGGAGCTTATCGATTTTGTTGTGGCACTGTGTGGTGGTCTTGAACGGCTCTCCCTAGGGTTTCTAGGCAGCGTCTCTGCACTTTGGTTTTGGATTGGCCTTCGGCCTTTGTCGGCCTCTCGAGAGGGTGGCGGCGGCTTCGTGCGGCATTCTCTAGTATGGGTAGGCTGTTGTCTACTCAGTCTTCTCTGCATCTTTCTCCATGGAGGAGCTGTGAACGATATCCCAGTACCAGAACGGGATTTGAACGATGGGACTCTACCGGTATGGGGACGACTAGGTGGAGGTGCGCCTCGTGGATTGGATCGACCTTGGGCAAACCAGGATTTTGGCTGGCCGGCCGATAGGGGTGGTCGCATGGGATCTGTTTATGGCAGGTTTCAACGCGGGTCTGATATCGGGTTCGTGGTGCGGTGGAGTAGCATCTCCAGGAGAGTTTGGCCGTTCATGGGAGATTACCGGAGGCGGAGGTCTGGTGGTTTTCTTCTGGTATGCCGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.05

Weight (kDa)

10.1

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 214
AccII CGCG 1 cut(s) 426
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 6 cut(s) 171, 174, 184, 426, 451, 505
AclWI GGATC 2 cut(s) 351, 409
AcoI YGGCCR 3 cut(s) 374, 378, 479
AdeI CACNNNGTG 1 cut(s) 71
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 308, 488
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 3 cut(s) 83, 286, 422
AjnI CCWGG 2 cut(s) 360, 467
AluBI AGCT 2 cut(s) 46, 251
AluI AGCT 2 cut(s) 46, 251
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 2 cut(s) 351, 409
Ama87I CYCGRG 1 cut(s) 159
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 6 cut(s) 136, 143, 153, 374, 378, 479
ApeKI GCWGC 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 301
AspA2I CCTAGG 1 cut(s) 94
AspLEI GCGC 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 159
AvrII CCTAGG 1 cut(s) 94
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 284
BceAI ACGGC 2 cut(s) 101, 466
BciT130I CCWGG 2 cut(s) 362, 469
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 4 cut(s) 95, 104, 194, 317
BfuAI ACCTGC 1 cut(s) 405
BisI GCNGC 4 cut(s) 109, 172, 175, 185
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 4 cut(s) 110, 173, 176, 186
Bme1390I CCNGG 2 cut(s) 362, 469
BmeT110I CYCGRG 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 362, 469
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 240, 471
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 451
Bpu14I TTCGAA 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 94, 241, 350
BsaWI WCCGGW 3 cut(s) 40, 301, 498
BsaXI ACNNNNNCTCC 4 cut(s) 237, 267, 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 488
Bse118I RCCGGY 3 cut(s) 301, 376, 534
Bse1I ACTGG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 2 cut(s) 362, 469
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 94, 241, 350
BseLI CCNNNNNNNGG 2 cut(s) 308, 488
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 261
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 6 cut(s) 138, 145, 155, 376, 380, 481
BshTI ACCGGT 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 5 cut(s) 41, 302, 377, 499, 535
BslFI GGGAC 2 cut(s) 307, 324
BslI CCNNNNNNNGG 2 cut(s) 308, 488
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 307, 324
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 6 cut(s) 138, 145, 155, 376, 380, 481
BsoBI CYCGRG 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 19
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 343, 401
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 6 cut(s) 171, 174, 184, 426, 451, 505
BspANI GGCC 6 cut(s) 138, 145, 155, 376, 380, 481
BspCNI CTCAG 1 cut(s) 231
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 351, 409
BspT104I TTCGAA 1 cut(s) 19
BsrFI RCCGGY 3 cut(s) 301, 376, 534
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 3 cut(s) 301, 376, 534
BssECI CCNNGG 3 cut(s) 94, 241, 350
BssMI GATC 2 cut(s) 343, 401
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 3 cut(s) 94, 241, 350
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 362, 469
Bst4CI ACNGT 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 374, 378, 536
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 346, 404
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 343, 401
BstMCI CGRYCG 1 cut(s) 381
BstNI CCWGG 2 cut(s) 362, 469
BstSCI CCNGG 2 cut(s) 360, 467
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 401
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 401
BstZI CGGCCG 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 6 cut(s) 138, 145, 155, 376, 380, 481
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 65
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 374, 378, 536
CfoI GCGC 1 cut(s) 331
Cfr10I RCCGGY 3 cut(s) 301, 376, 534
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 269
CspAI ACCGGT 1 cut(s) 301
CviAII CATG 3 cut(s) 242, 397, 487
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 345, 403
DpnII GATC 2 cut(s) 343, 401
DraIII CACNNNGTG 1 cut(s) 71
EaeI YGGCCR 3 cut(s) 374, 378, 479
EagI CGGCCG 1 cut(s) 378
EciI GGCGGA 1 cut(s) 520
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 3 cut(s) 94, 241, 350
Eco32I GATATC 2 cut(s) 262, 436
Eco52I CGGCCG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 360, 467
EcoRV GATATC 2 cut(s) 262, 436
EcoT14I CCWWGG 3 cut(s) 94, 241, 350
ErhI CCWWGG 3 cut(s) 94, 241, 350
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 3 cut(s) 245, 400, 490
FaiI YATR 7 cut(s) 199, 243, 307, 398, 411, 488, 532
FaqI GGGAC 2 cut(s) 307, 324
FatI CATG 3 cut(s) 241, 396, 486
FauI CCCGC 1 cut(s) 419
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 109, 172, 175, 185
FseI GGCCGGCC 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 109, 172, 175, 185
FspBI CTAG 4 cut(s) 95, 104, 194, 317
GlaI GCGC 1 cut(s) 330
GluI GCNGC 4 cut(s) 109, 172, 175, 185
GsuI CTGGAG 1 cut(s) 451
HaeIII GGCC 6 cut(s) 138, 145, 155, 376, 380, 481
HapII CCGG 5 cut(s) 41, 302, 377, 499, 535
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 245, 400, 490
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 1 cut(s) 295
HpaII CCGG 5 cut(s) 41, 302, 377, 499, 535
Hpy166II GTNNAC 2 cut(s) 215, 256
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 4 cut(s) 41, 80, 159, 161
Hpy8I GTNNAC 2 cut(s) 215, 256
HpyAV CCTTC 2 cut(s) 26, 149
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 119, 231
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 3 cut(s) 245, 400, 490
HspAI GCGC 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 40
KroI GCCGGC 2 cut(s) 376, 534
KroNI GCCGGC 2 cut(s) 378, 536
Kzo9I GATC 2 cut(s) 343, 401
LmnI GCTCC 2 cut(s) 43, 248
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 240, 471
MaeI CTAG 4 cut(s) 95, 104, 194, 317
MalI GATC 2 cut(s) 345, 403
MboI GATC 2 cut(s) 343, 401
MboII GAAGA 2 cut(s) 215, 515
MflI RGATCY 1 cut(s) 401
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 8 cut(s) 38, 157, 166, 239, 317, 342, 495, 501
MroI TCCGGA 1 cut(s) 40
MroNI GCCGGC 2 cut(s) 376, 534
MspI CCGG 5 cut(s) 41, 302, 377, 499, 535
MspR9I CCNGG 2 cut(s) 362, 469
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 2 cut(s) 362, 469
MvnI CGCG 1 cut(s) 426
NaeI GCCGGC 2 cut(s) 378, 536
NcoI CCATGG 1 cut(s) 241
NdeII GATC 2 cut(s) 343, 401
NgoMIV GCCGGC 2 cut(s) 376, 534
NlaIII CATG 3 cut(s) 245, 400, 490
NspV TTCGAA 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 159
PctI GAATGC 1 cut(s) 187
PdiI GCCGGC 2 cut(s) 378, 536
PfoI TCCNGGA 1 cut(s) 467
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 4 cut(s) 110, 173, 176, 186
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 360, 467
PspGI CCWGG 2 cut(s) 360, 467
PsuI RGATCY 1 cut(s) 401
RigI GGCCGGCC 1 cut(s) 380
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SatI GCNGC 4 cut(s) 109, 172, 175, 185
Sau3AI GATC 2 cut(s) 343, 401
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 362, 469
SetI ASST 9 cut(s) 18, 30, 48, 253, 322, 328, 352, 419, 512
SfaNI GCATC 2 cut(s) 240, 471
Sfr274I CTCGAG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SsiI CCGC 6 cut(s) 171, 174, 184, 426, 451, 505
SspMI CTAG 4 cut(s) 95, 104, 194, 317
StyD4I CCNGG 2 cut(s) 360, 467
StyI CCWWGG 3 cut(s) 94, 241, 350
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 5 cut(s) 12, 19, 51, 160, 346
TauI GCSGC 3 cut(s) 174, 177, 187
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 475
TspRI CASTG 1 cut(s) 72
XhoI CTCGAG 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 4 cut(s) 95, 104, 194, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.