Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Reverse (-)

25256150 .. 25261267

Gene Structure 5118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1186200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGTCATTGGAGAGGGTAGAGGCCTTGCTGGAGGCTGCTAGGTACGATGACATCGATGACATTAAAAGCTTAGAATCTGCCGGTCTTTCTCTTGATTCTAAGGATCTCCATGGCCGAACAGCACTACACATGGCTTCTGCTAATGGACATCTTCAGATTGTGGAGTATCTGATCAGTAGAGGAGTGGATTTGAATGCTACAAATGAGGAGATGAATACACCGCTACATTGGGCTTGCCTGAATGGACATGTCGAGGTGGTTAAGAAATTGATCTTAGCAGGATCTAATCTTGGTGTATTGAACAGCTACGAAAGGACTCCAGTTGATGAAGCAGTGAGCAGGGGAAAGATGGATGTTCTGGATGCCGTTAATGCAGCGGCTGCCCAAGTAGAGCTTAGAGACGTTAGCGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

140

Amino Acids

15.01

Weight (kDa)

4.78

Isoelectric Point (pI)

21.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	10 - 97	4.5e-18	Ankyrin repeats (3 copies)
Ank_4	PF13637	12 - 59	2.5e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	30 - 77	8.7e-12	Ankyrin repeats (many copies)
Ank	PF00023	38 - 69	4.9e-10	Ankyrin repeat
Ank_3	PF13606	38 - 67	1.7e-07	Ankyrin repeat
Ank_4	PF13637	50 - 92	2.3e-12	Ankyrin repeats (many copies)
Ank_5	PF13857	58 - 112	5e-10	Ankyrin repeats (many copies)
Ank_2	PF12796	71 - 124	2.4e-07	Ankyrin repeats (3 copies)
Ank	PF00023	73 - 102	2.1e-07	Ankyrin repeat
Ank_3	PF13606	73 - 97	6.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	224, 380
AclWI	GGATC	2 cut(s)	114, 292
AcoI	YGGCCR	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	196, 304
AluBI	AGCT	3 cut(s)	72, 309, 397
AluI	AGCT	3 cut(s)	72, 309, 397
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	114, 292
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	24, 115
ApeKI	GCWGC	3 cut(s)	38, 377, 383
BbvI	GCAGC	3 cut(s)	25, 370, 389
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	4 cut(s)	39, 378, 381, 384
BlsI	GCNGC	4 cut(s)	40, 379, 382, 385
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	53, 306
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	361, 370
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	198, 224
BseXI	GCAGC	3 cut(s)	25, 370, 389
BshFI	GGCC	2 cut(s)	26, 117
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	26, 117
Bsp143I	GATC	4 cut(s)	106, 174, 273, 284
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	2 cut(s)	224, 380
BspANI	GGCC	2 cut(s)	26, 117
BspDI	ATCGAT	1 cut(s)	57
BspPI	GGATC	2 cut(s)	114, 292
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	4 cut(s)	106, 174, 273, 284
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	4 cut(s)	73, 102, 277, 398
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	361, 370
BstKTI	GATC	4 cut(s)	109, 177, 276, 287
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	4 cut(s)	106, 174, 273, 284
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNSI	RCATGY	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	25, 370, 389
BstX2I	RGATCY	2 cut(s)	106, 284
BstYI	RGATCY	2 cut(s)	106, 284
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	26, 117
BsuTUI	ATCGAT	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	361, 370
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	113, 133, 251
CviJI	RGCY	9 cut(s)	26, 38, 72, 117, 137, 236, 309, 383, 397
CviKI_1	RGCY	9 cut(s)	26, 38, 72, 117, 137, 236, 309, 383, 397
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	4 cut(s)	73, 102, 277, 398
DpnI	GATC	4 cut(s)	108, 176, 275, 286
DpnII	GATC	4 cut(s)	106, 174, 273, 284
EaeI	YGGCCR	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	3 cut(s)	116, 136, 254
FaiI	YATR	3 cut(s)	114, 134, 252
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	3 cut(s)	112, 132, 250
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	39, 378, 381, 384
FokI	GGATG	2 cut(s)	368, 377
Fsp4HI	GCNGC	4 cut(s)	39, 378, 381, 384
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	4 cut(s)	39, 378, 381, 384
GsuI	CTGGAG	2 cut(s)	53, 306
HaeIII	GGCC	2 cut(s)	26, 117
HapII	CCGG	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	116, 136, 254
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	3 cut(s)	77, 98, 319
HpaII	CCGG	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	159, 174
Hpy188III	TCNNGA	2 cut(s)	95, 362
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
HpyF3I	CTNAG	4 cut(s)	73, 102, 277, 398
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	116, 136, 254
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	106, 174, 273, 284
LpnPI	CCDG	7 cut(s)	17, 97, 254, 267, 328, 336, 347
Lsp1109I	GCAGC	3 cut(s)	25, 370, 389
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	405
MalI	GATC	4 cut(s)	108, 176, 275, 286
MboI	GATC	4 cut(s)	106, 174, 273, 284
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	2 cut(s)	106, 284
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	6 cut(s)	9, 16, 28, 176, 202, 250
MseI	TTAA	3 cut(s)	66, 264, 372
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	4 cut(s)	106, 174, 273, 284
NlaIII	CATG	3 cut(s)	116, 136, 254
NspI	RCATGY	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	26
PciI	ACATGT	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	77, 98
PkrI	GCNGC	4 cut(s)	40, 379, 382, 385
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PscI	ACATGT	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	106, 284
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	66, 264, 372
SatI	GCNGC	4 cut(s)	39, 378, 381, 384
Sau3AI	GATC	4 cut(s)	106, 174, 273, 284
SchI	GAGTC	1 cut(s)	313
SetI	ASST	6 cut(s)	47, 74, 261, 311, 399, 408
SfaNI	GCATC	1 cut(s)	355
Sse9I	AATT	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	224, 380
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	112
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	57, 255
TasI	AATT	1 cut(s)	269
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	77, 98
Tru1I	TTAA	3 cut(s)	66, 264, 372
Tru9I	TTAA	3 cut(s)	66, 264, 372
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	3 cut(s)	38, 377, 383
TspDTI	ATGAA	2 cut(s)	230, 345
TspRI	CASTG	1 cut(s)	342
XceI	RCATGY	1 cut(s)	254
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.