RLG00000008951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006700
Physical Location & Seq
Forward (+)
43635082 .. 43637231
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008951

Sequence Viewer

Length: 543 bp
ATGCGGCATTCTCTAGTATGGGTAGGCTGTTGTCTACTCAGTCTTCTCTGCATCTCGCTCCATGGAGGAGCTGTGAATGAAATCCTAGTAACAGATTGGGATTTGAACGGTGGGACTCTCTCGGTATGGGAACAACTAGGTGGAGGTGCGCCTCGTGGGTTGGATCGACCTTGGGCAAACCAGGATTTTGGCTGGCCGACCGATAGGGGTGGTTGCAGGGACTCTGCTTATGCTTGGGCAGGTTTCAACGCGGGTCTGATATCGGGTTCGTGGTACAGGGGAGTAGCGGCTCCAGGAGAGTTTGGTCGCTCGTGGGAGATTACCGAAGGCGGAGGTCTGGTGGTTTGCTTCTGCATAATGGTGGGGGGTGCCATGGCATCTGTGTGCTTATTCGGGGCTCCGCCACTGAGACAAGGCATAATTAAGGTATACTTTGATGGAGGACTAGATAACGGTAGTGGAGTTTATGGCACAGGCCCAGAAAAGTGTGTCCCTATCCCTATGAATGGGTTGGGCTTGTTTGGGTTGTTGTCGTTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

18.84

Weight (kDa)

4.99

Isoelectric Point (pI)

23.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 34, 429
AccII CGCG 1 cut(s) 251
AciI CCGC 5 cut(s) 4, 251, 287, 330, 401
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 194
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 2 cut(s) 106, 247
AjnI CCWGG 2 cut(s) 180, 292
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 1 cut(s) 171
AoxI GGCC 2 cut(s) 194, 475
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 2 cut(s) 153, 310
BbsI GAAGAC 1 cut(s) 35
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 2 cut(s) 182, 294
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 4 cut(s) 14, 86, 137, 446
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 2 cut(s) 5, 288
BlsI GCNGC 2 cut(s) 6, 289
Bme1390I CCNGG 2 cut(s) 182, 294
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 291, 370, 399
BmrFI CCNGG 2 cut(s) 182, 294
BmsI GCATC 2 cut(s) 60, 386
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 61, 170, 372
BsaXI ACNNNNNCTCC 4 cut(s) 57, 87, 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 506
BseBI CCWGG 2 cut(s) 182, 294
BseDI CCNNGG 3 cut(s) 61, 170, 372
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 2 cut(s) 52, 398
BseRI GAGGAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 251
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 196, 477
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 201
BslFI GGGAC 3 cut(s) 127, 233, 476
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 3 cut(s) 127, 233, 476
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 2 cut(s) 196, 477
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 163
Bsp19I CCATGG 2 cut(s) 61, 372
BspACI CCGC 5 cut(s) 4, 251, 287, 330, 401
BspANI GGCC 2 cut(s) 196, 477
BspCNI CTCAG 2 cut(s) 51, 399
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 3 cut(s) 291, 370, 399
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 61, 170, 372
BssMI GATC 1 cut(s) 163
BssNAI GTATAC 1 cut(s) 430
BssSI CACGAG 2 cut(s) 153, 310
BssT1I CCWWGG 3 cut(s) 61, 170, 372
Bst1107I GTATAC 1 cut(s) 430
Bst2BI CACGAG 2 cut(s) 153, 310
Bst2UI CCWGG 2 cut(s) 182, 294
Bst4CI ACNGT 2 cut(s) 110, 455
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 38, 407
BstDSI CCRYGG 2 cut(s) 61, 372
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 201
BstNI CCWGG 2 cut(s) 182, 294
BstSCI CCNGG 2 cut(s) 180, 292
BstUI CGCG 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 188
BstZ17I GTATAC 1 cut(s) 430
BsuRI GGCC 2 cut(s) 196, 477
BtgI CCRYGG 2 cut(s) 61, 372
BtsIMutI CAGTG 1 cut(s) 404
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 62, 373
CviJI RGCY 8 cut(s) 27, 71, 192, 196, 290, 398, 477, 516
CviKI_1 RGCY 8 cut(s) 27, 71, 192, 196, 290, 398, 477, 516
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 2 cut(s) 38, 407
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 194
EciI GGCGGA 2 cut(s) 345, 390
Eco130I CCWWGG 3 cut(s) 61, 170, 372
Eco24I GRGCYC 1 cut(s) 400
Eco32I GATATC 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 180, 292
EcoRV GATATC 1 cut(s) 261
EcoT14I CCWWGG 3 cut(s) 61, 170, 372
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 3 cut(s) 61, 170, 372
FaeI CATG 2 cut(s) 65, 376
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FaqI GGGAC 3 cut(s) 127, 233, 476
FatI CATG 2 cut(s) 61, 372
FauI CCCGC 1 cut(s) 244
FblI GTMKAC 2 cut(s) 34, 429
Fnu4HI GCNGC 2 cut(s) 5, 288
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 2 cut(s) 5, 288
FspBI CTAG 4 cut(s) 14, 86, 137, 446
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 5, 288
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 196, 477
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 65, 376
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 2 cut(s) 115, 221
Hpy166II GTNNAC 2 cut(s) 35, 430
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 35, 430
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 2 cut(s) 110, 455
HpyCH4V TGCA 3 cut(s) 51, 216, 354
HpyF3I CTNAG 2 cut(s) 38, 407
Hsp92II CATG 2 cut(s) 65, 376
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 4 cut(s) 63, 68, 295, 403
LweI GCATC 2 cut(s) 60, 386
MaeI CTAG 4 cut(s) 14, 86, 137, 446
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 1 cut(s) 420
MlyI GAGTC 2 cut(s) 109, 215
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 59, 137, 162, 326, 434
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 359, 382
MspR9I CCNGG 2 cut(s) 182, 294
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 2 cut(s) 182, 294
MvnI CGCG 1 cut(s) 251
NcoI CCATGG 2 cut(s) 61, 372
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 65, 376
NlaIV GGNNCC 3 cut(s) 291, 370, 399
PctI GAATGC 1 cut(s) 7
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 2 cut(s) 6, 289
PleI GAGTC 2 cut(s) 109, 215
PpsI GAGTC 2 cut(s) 109, 215
Psp6I CCWGG 2 cut(s) 180, 292
PspGI CCWGG 2 cut(s) 180, 292
PspN4I GGNNCC 3 cut(s) 291, 370, 399
PspPI GGNCC 1 cut(s) 476
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 2 cut(s) 359, 382
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 5, 288
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 2 cut(s) 109, 215
ScrFI CCNGG 2 cut(s) 182, 294
SduI GDGCHC 1 cut(s) 400
SetI ASST 7 cut(s) 73, 142, 148, 172, 244, 337, 429
SfaNI GCATC 2 cut(s) 60, 386
SmiMI CAYNNNNRTG 2 cut(s) 359, 382
Sse9I AATT 1 cut(s) 420
SsiI CCGC 5 cut(s) 4, 251, 287, 330, 401
SspMI CTAG 4 cut(s) 14, 86, 137, 446
StyD4I CCNGG 2 cut(s) 180, 292
StyI CCWWGG 3 cut(s) 61, 170, 372
TaaI ACNGT 2 cut(s) 110, 455
TaqI TCGA 1 cut(s) 166
TaqII GACCGA 1 cut(s) 215
TasI AATT 1 cut(s) 420
TauI GCSGC 2 cut(s) 7, 290
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 93, 518
TspRI CASTG 1 cut(s) 411
XmiI GTMKAC 2 cut(s) 34, 429
XspI CTAG 4 cut(s) 14, 86, 137, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.