Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Reverse (-)

60619818 .. 60620440

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004598

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGTTCTCTCTCTGGGAGGCTCTCCCTAGGGTTTCTAGGCGACGTCTCTGCACTTTGGTTTTGGATTGGCCTCCGGCCTTTCTCGGCCTCTCGAGAGGGTGGCGGCGGCTTTGTGCGGCATTCTCTAGTATGGGTAGGCTGTTGTCTACTCAGTCTTCTCTGCATCTCTCTCCATGGAGGAGCTGTGAACGAAATCCTAGTACCAGATCGGGATTTGAACGGTGGGACTCTCCCGGTACGGGGACAACTAGGTGGGTTGGATAGACCTTGGGCAAACCAGGATTTTGGTTGGCCGGCAGATAGGGGTGGTCGCAGGGGATCTTATTATGCTTGGGCAGATTTCAACGCGGGTTTGAAATCGGGTTCGTGGTGCGGTGGAGTAGCGGCTCCAGGAGAGTTTGGCCGTTCGTGGGAGATTACTGGTGGCGGAGGTTTGGTGGTTTGCTTCTGGTATGTCGGCAGTGACTTCAACGGTTGGAGGAAGGCTGAAGACGTCGAGCATGGCAAGGCAGGGTCTTGGGTCTGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

18.87

Weight (kDa)

6.81

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	48, 498
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	1 cut(s)	350
AciI	CCGC	7 cut(s)	105, 108, 118, 350, 375, 386, 429
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	2 cut(s)	293, 403
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	2 cut(s)	45, 495
AfaI	GTAC	2 cut(s)	204, 240
AfiI	CCNNNNNNNGG	3 cut(s)	241, 242, 412
AgsI	TTSAA	4 cut(s)	220, 346, 358, 472
AjnI	CCWGG	2 cut(s)	279, 391
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	5 cut(s)	70, 77, 87, 293, 403
AspA2I	CCTAGG	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	93
AvrII	CCTAGG	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	149, 498
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	281, 393
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	5 cut(s)	29, 38, 128, 200, 251
BisI	GCNGC	4 cut(s)	106, 109, 119, 387
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	107, 110, 120, 388
Bme1390I	CCNGG	3 cut(s)	236, 281, 393
BmeT110I	CYCGRG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	3 cut(s)	236, 281, 393
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	149, 498
BpmI	CTGGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	2 cut(s)	45, 495
BsaJI	CCNNGG	3 cut(s)	28, 175, 269
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 423, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 242, 412
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	281, 393
BseDI	CCNNGG	3 cut(s)	28, 175, 269
BseLI	CCNNNNNNNGG	3 cut(s)	241, 242, 412
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	5 cut(s)	72, 79, 89, 295, 405
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	76, 236, 296
BslFI	GGGAC	2 cut(s)	241, 258
BslI	CCNNNNNNNGG	3 cut(s)	241, 242, 412
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	241, 258
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	72, 79, 89, 295, 405
BsoBI	CYCGRG	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	208, 320
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	7 cut(s)	105, 108, 118, 350, 375, 386, 429
BspANI	GGCC	5 cut(s)	72, 79, 89, 295, 405
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	28, 175, 269
BssMI	GATC	2 cut(s)	208, 320
BssNI	GRCGYC	2 cut(s)	45, 495
BssT1I	CCWWGG	3 cut(s)	28, 175, 269
Bst2UI	CCWGG	2 cut(s)	281, 393
Bst4CI	ACNGT	2 cut(s)	224, 476
BstACI	GRCGYC	2 cut(s)	45, 495
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	2 cut(s)	211, 323
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	208, 320
BstNI	CCWGG	2 cut(s)	281, 393
BstSCI	CCNGG	3 cut(s)	234, 279, 391
BstUI	CGCG	1 cut(s)	350
BstV2I	GAAGAC	2 cut(s)	149, 498
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	5 cut(s)	72, 79, 89, 295, 405
BtgI	CCRYGG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	203, 239
CviAII	CATG	2 cut(s)	176, 503
CviQI	GTAC	2 cut(s)	203, 239
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	210, 322
DpnII	GATC	2 cut(s)	208, 320
EaeI	YGGCCR	2 cut(s)	293, 403
EciI	GGCGGA	1 cut(s)	444
Eco130I	CCWWGG	3 cut(s)	28, 175, 269
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	279, 391
EcoT14I	CCWWGG	3 cut(s)	28, 175, 269
ErhI	CCWWGG	3 cut(s)	28, 175, 269
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	2 cut(s)	179, 506
FaiI	YATR	5 cut(s)	133, 177, 330, 456, 504
FaqI	GGGAC	2 cut(s)	241, 258
FatI	CATG	2 cut(s)	175, 502
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	106, 109, 119, 387
Fsp4HI	GCNGC	4 cut(s)	106, 109, 119, 387
FspBI	CTAG	5 cut(s)	29, 38, 128, 200, 251
GluI	GCNGC	4 cut(s)	106, 109, 119, 387
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	5 cut(s)	72, 79, 89, 295, 405
HapII	CCGG	3 cut(s)	76, 236, 296
Hin1I	GRCGYC	2 cut(s)	45, 495
Hin1II	CATG	2 cut(s)	179, 506
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	76, 236, 296
Hpy166II	GTNNAC	2 cut(s)	149, 190
Hpy188III	TCNNGA	3 cut(s)	93, 95, 212
Hpy8I	GTNNAC	2 cut(s)	149, 190
Hpy99I	CGWCG	2 cut(s)	47, 500
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	2 cut(s)	224, 476
HpyCH4IV	ACGT	2 cut(s)	45, 495
HpyCH4V	TGCA	2 cut(s)	53, 165
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	2 cut(s)	45, 495
Hsp92I	GRCGYC	2 cut(s)	45, 495
Hsp92II	CATG	2 cut(s)	179, 506
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	208, 320
LmnI	GCTCC	2 cut(s)	182, 394
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	5 cut(s)	29, 38, 128, 200, 251
MaeII	ACGT	2 cut(s)	45, 495
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	2 cut(s)	210, 322
MboI	GATC	2 cut(s)	208, 320
MboII	GAAGA	2 cut(s)	149, 503
MflI	RGATCY	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	240, 458
MnlI	CCTC	7 cut(s)	12, 83, 91, 100, 173, 425, 474
MroNI	GCCGGC	1 cut(s)	295
MseI	TTAA	1 cut(s)	532
MspI	CCGG	3 cut(s)	76, 236, 296
MspR9I	CCNGG	3 cut(s)	236, 281, 393
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	281, 393
MvnI	CGCG	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	208, 320
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	179, 506
NlaIV	GGNNCC	1 cut(s)	390
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	464
PaeR7I	CTCGAG	1 cut(s)	93
PctI	GAATGC	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	107, 110, 120, 388
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	279, 391
PspGI	CCWGG	2 cut(s)	279, 391
PspN4I	GGNNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	2 cut(s)	204, 240
RsaNI	GTAC	2 cut(s)	203, 239
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	4 cut(s)	106, 109, 119, 387
Sau3AI	GATC	2 cut(s)	208, 320
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	236, 281, 393
SetI	ASST	6 cut(s)	48, 187, 256, 271, 436, 498
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	93
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	7 cut(s)	105, 108, 118, 350, 375, 386, 429
SspMI	CTAG	5 cut(s)	29, 38, 128, 200, 251
StyD4I	CCNGG	3 cut(s)	234, 279, 391
StyI	CCWWGG	3 cut(s)	28, 175, 269
TaaI	ACNGT	2 cut(s)	224, 476
TaiI	ACGT	2 cut(s)	48, 498
TaqI	TCGA	2 cut(s)	94, 498
TauI	GCSGC	4 cut(s)	108, 111, 121, 389
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	464
TspRI	CASTG	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	5 cut(s)	29, 38, 128, 200, 251
ZraI	GACGTC	2 cut(s)	46, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.