RLG00000023176

integrin-mediated signaling pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006700
Physical Location & Seq
Reverse (-)
19483320 .. 19485642
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023176

Sequence Viewer

Length: 408 bp
ATGGGACAAGAGGCAACTGCACTTGAGGATTCTCCAGTTGAGTCCTTGCTGGAGGCTGCAAGATATGATGACATGGAAGTCATTACGTCCTTAGTATCCGTTGGTGTTTCTCTTGATTCTAAGGATTCCCAGGGCCGAACAGTCATGGGTTGTAACGTATATTTGTTATCTTGCTGTGATCTGAATGCTTCAAATGCGGAGATGAATACACCCCTACATTGGGCCTGCCTGAATGGACATGTTGAGGTGGTTAAGAAATTGATCTTGGCGGGAGCTAATGTAGGTGTACTAAACAGCTATGAGAAGAGCCCAATTGATGAAGCTTTGAGTGGGCAAAAGATGGATGTTTTTGATGCCATTAATGAATCAGTGGCCCAAGTAGAGCTTACTGGCATCAGAGTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

136

Amino Acids

14.41

Weight (kDa)

4.28

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 54 - 112 9.6e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 56 - 108 1.5e-07 Ankyrin repeats (many copies)
Ank_4 PF13637 60 - 88 4.7e-06 Ankyrin repeats (many copies)
Ank PF00023 69 - 98 1e-08 Ankyrin repeat
Ank_3 PF13606 69 - 94 1.5e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AciI CCGC 2 cut(s) 197, 269
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 219, 220
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 275, 297, 323, 385
AluI AGCT 4 cut(s) 275, 297, 323, 385
AoxI GGCC 3 cut(s) 133, 222, 372
ApeKI GCWGC 1 cut(s) 56
AseI ATTAAT 1 cut(s) 360
AspS9I GGNCC 3 cut(s) 133, 222, 373
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 106
BfaI CTAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 133, 222, 373
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 343, 402
BpmI CTGGAG 2 cut(s) 18, 71
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 129, 130
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 220
Bse1I ACTGG 2 cut(s) 35, 394
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 2 cut(s) 129, 130
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 219, 220
BseNI ACTGG 2 cut(s) 35, 394
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 3 cut(s) 135, 224, 374
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 219, 220
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 3 cut(s) 135, 224, 374
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 178, 261
BspACI CCGC 2 cut(s) 197, 269
BspANI GGCC 3 cut(s) 135, 224, 374
BspQI GCTCTTC 1 cut(s) 299
BsrI ACTGG 2 cut(s) 35, 394
BssECI CCNNGG 2 cut(s) 129, 130
BssMI GATC 2 cut(s) 178, 261
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 91, 120
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 181, 264
BstMBI GATC 2 cut(s) 178, 261
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 43
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 135, 224, 374
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 133, 222, 373
Csp6I GTAC 1 cut(s) 287
CviAII CATG 3 cut(s) 73, 145, 239
CviJI RGCY 9 cut(s) 56, 135, 224, 275, 297, 309, 323, 374, 385
CviKI_1 RGCY 9 cut(s) 56, 135, 224, 275, 297, 309, 323, 374, 385
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 91, 120
DpnI GATC 2 cut(s) 180, 263
DpnII GATC 2 cut(s) 178, 261
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 3 cut(s) 76, 148, 242
FaiI YATR 6 cut(s) 66, 74, 146, 160, 240, 300
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 72, 144, 238
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 406
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 2 cut(s) 18, 71
HaeIII GGCC 3 cut(s) 135, 224, 374
Hin1II CATG 3 cut(s) 76, 148, 242
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 5 cut(s) 29, 41, 116, 125, 365
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 183, 398
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 86, 156
HpyCH4V TGCA 2 cut(s) 20, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 91, 120
HpySE526I ACGT 2 cut(s) 86, 156
Hsp92II CATG 3 cut(s) 76, 148, 242
Kzo9I GATC 2 cut(s) 178, 261
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 7 cut(s) 35, 48, 116, 143, 238, 242, 375
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 343, 402
MaeI CTAG 1 cut(s) 406
MaeII ACGT 2 cut(s) 86, 156
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 180, 263
MboI GATC 2 cut(s) 178, 261
MboII GAAGA 1 cut(s) 316
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 2 cut(s) 257, 312
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 4 cut(s) 4, 19, 46, 238
MseI TTAA 2 cut(s) 252, 360
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 2 cut(s) 178, 261
NlaIII CATG 3 cut(s) 76, 148, 242
NspI RCATGY 1 cut(s) 242
PasI CCCWGGG 1 cut(s) 130
PciI ACATGT 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 299
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 4 cut(s) 29, 116, 125, 365
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 3 cut(s) 133, 222, 373
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 252, 360
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 178, 261
Sau96I GGNCC 3 cut(s) 133, 222, 373
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 311
SetI ASST 8 cut(s) 89, 159, 249, 277, 286, 299, 325, 387
SfaNI GCATC 2 cut(s) 343, 402
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 2 cut(s) 257, 312
SsiI CCGC 2 cut(s) 197, 269
SspMI CTAG 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 89, 159
TasI AATT 2 cut(s) 257, 312
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 4 cut(s) 29, 116, 125, 365
Tru1I TTAA 2 cut(s) 252, 360
Tru9I TTAA 2 cut(s) 252, 360
TscAI CASTG 1 cut(s) 375
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 218, 333, 378
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 375
VspI ATTAAT 1 cut(s) 360
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.