Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Reverse (-)

8454896 .. 8455480

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTTCTCTCTCTGGGAGGCTCTCCCTAGGGTTTCTAGGCGGCGTCTCTGCACTTTGGTTTTGGATTGGCCTCCGGCCTTTCTCGGCCTCTCGAGAGGGTGGCGGCGGCTTCGTGCGACATTCTCTAGTATGGGTAGGCTGTTGTCTACTCAGTCTTCTCTACATCTCTCTCCATGGAGGAGCTGTGAACGACATCCCAGTACCAGATGGAGATTTGAACGGTGGGACTCTCCCGGTACGGGGACAACTAGGTGGAGGTGCGCCTCGTGGGTTGGATCGACCTTGGGCAAACCAGGATTTTGGCTGGCCGGCTGATAGGGGTGGTTGCAGGGGATCTGATTATGCTTGGGCAGATTTCAACGCGGGTCTGAAATCGGCTCCAGGAGGGTTTGGCCGTTCGTGGGAGATTACCGGTGGCGGAGGTCTGATGGTTTGCTTCTGGTATGCCGGCAGTGACTGCGATGGTTGGAGGAAGGCTGAAGATGTCGAGCATGGCAAGGCAGGGTTAGGGTTTCTGGGCTCGGGTTTGGGGTTTTTTTGCTCAAACTGTTGGGCCTCGTTTTTTGGGCTCTGCTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

20.39

Weight (kDa)

6.26

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	1 cut(s)	365
AciI	CCGC	5 cut(s)	42, 105, 108, 365, 420
AclWI	GGATC	2 cut(s)	285, 343
AcoI	YGGCCR	2 cut(s)	308, 394
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	204, 240
AfiI	CCNNNNNNNGG	3 cut(s)	241, 242, 403
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	220, 361
AjnI	CCWGG	2 cut(s)	294, 382
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	285, 343
AlwNI	CAGNNNCTG	1 cut(s)	459
Ama87I	CYCGRG	2 cut(s)	93, 523
AoxI	GGCC	6 cut(s)	70, 77, 87, 308, 394, 555
AsiGI	ACCGGT	1 cut(s)	413
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	236
AvaI	CYCGRG	2 cut(s)	93, 523
AvrII	CCTAGG	1 cut(s)	28
BanII	GRGCYC	2 cut(s)	524, 573
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	149
BccI	CCATC	3 cut(s)	203, 424, 458
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	2 cut(s)	296, 384
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	4 cut(s)	29, 38, 128, 251
BisI	GCNGC	3 cut(s)	43, 106, 109
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	3 cut(s)	44, 107, 110
Bme1390I	CCNGG	3 cut(s)	236, 296, 384
BmeT110I	CYCGRG	2 cut(s)	93, 523
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	3 cut(s)	236, 296, 384
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	28, 175, 284
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 242, 403
Bse118I	RCCGGY	3 cut(s)	310, 413, 449
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	296, 384
BseDI	CCNNGG	3 cut(s)	28, 175, 284
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	241, 242, 403
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	6 cut(s)	72, 79, 89, 310, 396, 557
BshTI	ACCGGT	1 cut(s)	413
BsiHKCI	CYCGRG	2 cut(s)	93, 523
BsiSI	CCGG	5 cut(s)	76, 236, 311, 414, 450
BslFI	GGGAC	2 cut(s)	241, 258
BslI	CCNNNNNNNGG	3 cut(s)	241, 242, 403
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	241, 258
BsnI	GGCC	6 cut(s)	72, 79, 89, 310, 396, 557
BsoBI	CYCGRG	2 cut(s)	93, 523
Bsp1286I	GDGCHC	2 cut(s)	524, 573
Bsp143I	GATC	2 cut(s)	277, 335
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	5 cut(s)	42, 105, 108, 365, 420
BspANI	GGCC	6 cut(s)	72, 79, 89, 310, 396, 557
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	285, 343
BsrFI	RCCGGY	3 cut(s)	310, 413, 449
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	3 cut(s)	310, 413, 449
BssECI	CCNNGG	3 cut(s)	28, 175, 284
BssMI	GATC	2 cut(s)	277, 335
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	3 cut(s)	28, 175, 284
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	296, 384
Bst4CI	ACNGT	2 cut(s)	224, 551
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	459
BstC8I	GCNNGC	4 cut(s)	308, 312, 451, 578
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	280, 338
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	277, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	459, 577
BstNI	CCWGG	2 cut(s)	296, 384
BstSCI	CCNGG	3 cut(s)	234, 294, 382
BstUI	CGCG	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	6 cut(s)	72, 79, 89, 310, 396, 557
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	4 cut(s)	308, 312, 451, 578
CaiI	CAGNNNCTG	1 cut(s)	459
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	3 cut(s)	310, 413, 449
Cfr13I	GGNCC	1 cut(s)	555
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	203, 239
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	2 cut(s)	176, 494
CviQI	GTAC	2 cut(s)	203, 239
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	279, 337
DpnII	GATC	2 cut(s)	277, 335
EaeI	YGGCCR	2 cut(s)	308, 394
EciI	GGCGGA	1 cut(s)	435
Eco130I	CCWWGG	3 cut(s)	28, 175, 284
Eco24I	GRGCYC	2 cut(s)	524, 573
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	93, 523
EcoRII	CCWGG	2 cut(s)	294, 382
EcoT14I	CCWWGG	3 cut(s)	28, 175, 284
EcoT38I	GRGCYC	2 cut(s)	524, 573
ErhI	CCWWGG	3 cut(s)	28, 175, 284
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	2 cut(s)	179, 497
FaiI	YATR	6 cut(s)	133, 177, 345, 447, 495, 583
FaqI	GGGAC	2 cut(s)	241, 258
FatI	CATG	2 cut(s)	175, 493
FauI	CCCGC	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	43, 106, 109
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	2 cut(s)	524, 573
Fsp4HI	GCNGC	3 cut(s)	43, 106, 109
FspBI	CTAG	4 cut(s)	29, 38, 128, 251
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	43, 106, 109
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	6 cut(s)	72, 79, 89, 310, 396, 557
HapII	CCGG	5 cut(s)	76, 236, 311, 414, 450
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	179, 497
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	5 cut(s)	76, 236, 311, 414, 450
Hpy166II	GTNNAC	2 cut(s)	149, 190
Hpy188I	TCNGA	3 cut(s)	340, 372, 429
Hpy188III	TCNNGA	2 cut(s)	93, 95
Hpy8I	GTNNAC	2 cut(s)	149, 190
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	224, 551
HpyCH4V	TGCA	2 cut(s)	53, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	459, 577
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	179, 497
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	2 cut(s)	310, 449
KroNI	GCCGGC	2 cut(s)	312, 451
Kzo9I	GATC	2 cut(s)	277, 335
LmnI	GCTCC	2 cut(s)	182, 385
MaeI	CTAG	4 cut(s)	29, 38, 128, 251
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	279, 337
MboI	GATC	2 cut(s)	277, 335
MboII	GAAGA	2 cut(s)	149, 494
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	2 cut(s)	524, 573
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	255, 449
MroNI	GCCGGC	2 cut(s)	310, 449
MspI	CCGG	5 cut(s)	76, 236, 311, 414, 450
MspR9I	CCNGG	3 cut(s)	236, 296, 384
MvaI	CCWGG	2 cut(s)	296, 384
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	459, 577
NaeI	GCCGGC	2 cut(s)	312, 451
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	277, 335
NgoMIV	GCCGGC	2 cut(s)	310, 449
NlaIII	CATG	2 cut(s)	179, 497
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	93
PdiI	GCCGGC	2 cut(s)	312, 451
PfoI	TCCNGGA	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	44, 107, 110
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	294, 382
PspGI	CCWGG	2 cut(s)	294, 382
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	2 cut(s)	204, 240
RsaNI	GTAC	2 cut(s)	203, 239
SatI	GCNGC	3 cut(s)	43, 106, 109
Sau3AI	GATC	2 cut(s)	277, 335
Sau96I	GGNCC	1 cut(s)	555
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	236, 296, 384
SduI	GDGCHC	2 cut(s)	524, 573
SetI	ASST	5 cut(s)	187, 256, 262, 286, 427
Sfr274I	CTCGAG	1 cut(s)	93
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	5 cut(s)	42, 105, 108, 365, 420
SspMI	CTAG	4 cut(s)	29, 38, 128, 251
StyD4I	CCNGG	3 cut(s)	234, 294, 382
StyI	CCWWGG	3 cut(s)	28, 175, 284
TaaI	ACNGT	2 cut(s)	224, 551
TaqI	TCGA	3 cut(s)	94, 280, 489
TauI	GCSGC	3 cut(s)	45, 108, 111
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspRI	CASTG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	4 cut(s)	29, 38, 128, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.