Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Forward (+)

10124943 .. 10129279

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08670.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGAGAAGGGGGAAATACAGTTGGAGATACAGTCCAAACGGCGTCGTTGGAGAGGGTAGAGGCCTTGCTGGAGGCTGCTAGGTACGATGACATCGATGACATTATAAGCTTAGAATCTGCTGGTCTTTCTCTTGATTCTAAGGATCTCCATGGCCGAACAGCACTACACATGGCTTCTGCTAATGGACATCTTCAGATTGTGGAGTATCTGATCAGTAGAGGAGTGGATTTGAATGCTACAAATGAGGAGATGAATACACCGTTACATTGGGCTTGCCTGAATGGACATGTCGAGGTCGTTAAGAAATTGATCTTAGCAGGATCTAATCTCAGTGTATTGAACAGCTACGAAAGGACTCCAGTTGATGAAGCAGTGAGCGGGGGAAAGATGGATGTTCTGGATGCCGTTAATGCAGCAGCTGCCCAAGTAGAGCTTAGAGACGTTAGCGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

153

Amino Acids

16.14

Weight (kDa)

4.48

Isoelectric Point (pI)

17.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	381
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	2 cut(s)	153, 331
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	235, 343
AluBI	AGCT	4 cut(s)	111, 348, 422, 436
AluI	AGCT	4 cut(s)	111, 348, 422, 436
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	153, 331
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	63, 154
ApeKI	GCWGC	4 cut(s)	77, 416, 419, 422
BbvI	GCAGC	4 cut(s)	64, 409, 428, 431
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	2 cut(s)	57, 392
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	4 cut(s)	78, 417, 420, 423
BlsI	GCNGC	4 cut(s)	79, 418, 421, 424
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	2 cut(s)	92, 345
Bsa29I	ATCGAT	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bse1I	ACTGG	1 cut(s)	362
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	400, 409
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	237, 263
BseXI	GCAGC	4 cut(s)	64, 409, 428, 431
BshFI	GGCC	2 cut(s)	65, 156
BshVI	ATCGAT	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	65, 156
Bsp143I	GATC	4 cut(s)	145, 213, 312, 323
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	65, 156
BspCNI	CTCAG	1 cut(s)	345
BspDI	ATCGAT	1 cut(s)	96
BspPI	GGATC	2 cut(s)	153, 331
BsrBI	CCGCTC	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	145, 213, 312, 323
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	22, 34, 264
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	5 cut(s)	112, 141, 316, 332, 437
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	400, 409
BstKTI	GATC	4 cut(s)	148, 216, 315, 326
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	4 cut(s)	145, 213, 312, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 422
BstNSI	RCATGY	1 cut(s)	293
BstV1I	GCAGC	4 cut(s)	64, 409, 428, 431
BstX2I	RGATCY	2 cut(s)	145, 323
BstYI	RGATCY	2 cut(s)	145, 323
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	65, 156
BsuTUI	ATCGAT	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	400, 409
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	340, 381
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	422
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	152, 172, 290
CviJI	RGCY	9 cut(s)	65, 77, 111, 156, 176, 275, 348, 422, 436
CviKI_1	RGCY	9 cut(s)	65, 77, 111, 156, 176, 275, 348, 422, 436
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	5 cut(s)	112, 141, 316, 332, 437
DpnI	GATC	4 cut(s)	147, 215, 314, 325
DpnII	GATC	4 cut(s)	145, 213, 312, 323
EaeI	YGGCCR	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	155, 175, 293
FaiI	YATR	4 cut(s)	107, 153, 173, 291
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	3 cut(s)	151, 171, 289
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	78, 417, 420, 423
FokI	GGATG	2 cut(s)	407, 416
Fsp4HI	GCNGC	4 cut(s)	78, 417, 420, 423
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	4 cut(s)	78, 417, 420, 423
GsuI	CTGGAG	2 cut(s)	92, 345
HaeIII	GGCC	2 cut(s)	65, 156
HgaI	GACGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	155, 175, 293
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	3 cut(s)	116, 137, 358
Hpy188I	TCNGA	2 cut(s)	198, 213
Hpy188III	TCNNGA	2 cut(s)	134, 401
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4III	ACNGT	3 cut(s)	22, 34, 264
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 422
HpyF3I	CTNAG	5 cut(s)	112, 141, 316, 332, 437
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	155, 175, 293
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	145, 213, 312, 323
LpnPI	CCDG	6 cut(s)	56, 108, 293, 306, 375, 386
Lsp1109I	GCAGC	4 cut(s)	64, 409, 428, 431
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	4 cut(s)	147, 215, 314, 325
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	4 cut(s)	145, 213, 312, 323
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	2 cut(s)	145, 323
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	2 cut(s)	4, 30
MnlI	CCTC	6 cut(s)	48, 55, 67, 215, 241, 289
MseI	TTAA	2 cut(s)	303, 411
MspA1I	CMGCKG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	413, 422
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	145, 213, 312, 323
NlaIII	CATG	3 cut(s)	155, 175, 293
NspI	RCATGY	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	65
PciI	ACATGT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	2 cut(s)	116, 137
PkrI	GCNGC	4 cut(s)	79, 418, 421, 424
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	289
PsiI	TTATAA	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	145, 323
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	303, 411
SatI	GCNGC	4 cut(s)	78, 417, 420, 423
Sau3AI	GATC	4 cut(s)	145, 213, 312, 323
SchI	GAGTC	1 cut(s)	352
SetI	ASST	7 cut(s)	86, 113, 300, 350, 424, 438, 447
SfaNI	GCATC	1 cut(s)	394
Sse9I	AATT	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	22, 34, 264
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	2 cut(s)	96, 294
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	116, 137
Tru1I	TTAA	2 cut(s)	303, 411
Tru9I	TTAA	2 cut(s)	303, 411
TscAI	CASTG	2 cut(s)	340, 381
TseI	GCWGC	4 cut(s)	77, 416, 419, 422
TspDTI	ATGAA	2 cut(s)	269, 384
TspRI	CASTG	2 cut(s)	340, 381
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.