Rmu_sc0006040.1_g000021

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006040.1
Physical Location & Seq
Reverse (-)
93872 .. 97679
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006040.1_g000021.1.cds

Sequence Viewer

Length: 1125 bp
atggttttggattggcctccggccttccttggcctctcgaaagggtggcaacggcttcgtttgccattctctagtatgggagctgtgaacgaaatccctataccaaatcagaatttgagcaatgggactctcccggtaaagggacgactagatggtgacaagcctcgtgggttgggtcgatcttgggtaacacaggattttggctggcaggttgatcagggtggtcgtagagtctctgctgatacttgggcaggattagactcaaatctgatatcggattcatatggcggtgccgcggcttcaggcgagcttggacgtctgtgggagattaccggttgcggtggtccggtggtttgcttctggtatgcaggcagtgacagcgacagtttggagaaggctgaagatgtcgaacatggcaaggcagggctagggtttttgggctcgggtttggggttttttcctcaaactattggacctagtctttgggctctgctgtttataatggctagtatgggtcttaggcctgtccttaaggcttgggactcttttaatacttggtcttccacgaaaccaaacaacgagagcctcccgagtccagcgtccatccagccatcgatcaacctcaaactaaacccaccgccctttctcttcctcttcctctccctctccgcaggtgccagcgccaaaatgggacaagaggcaactgcacttgaggattctccagttgagtccttgctgcaggctgcaagatatgatgacatggaagtcattaagtccttagtatccgatggtgtttctcttgattctaaggattcccagggccgaacagcactacacatggcttctgctaatggtcatcttgacattgtggagtatcttatcagtagaggagtggaccttaatgcttcaaatgcggagatgaatacacccctacattgggcctgcctgaatggacatgtcgaggtggttaagaaattgatcttggcgggagctaatgtaggtgtactaaacagctatgagaagagcccaattgatgaagctttgagtgggcaaaagatggatgttattgatgccgttaatgaatcagtggcccaagtagagcttactggcatcagagtgtcctag

Protein Analysis

374

Amino Acids

39.93

Weight (kDa)

4.85

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AarI CACCTGC 1 cut(s) 662
AasI GACNNNNNNGTC 1 cut(s) 764
AatII GACGTC 1 cut(s) 319
Acc36I ACCTGC 2 cut(s) 199, 662
AccB1I GGYRCC 2 cut(s) 290, 674
AccII CGCG 1 cut(s) 296
AciI CCGC 8 cut(s) 288, 294, 296, 339, 638, 669, 914, 986
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 285, 420
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 1 cut(s) 1005
AfiI CCNNNNNNNGG 4 cut(s) 139, 140, 936, 937
AflII CTTAAG 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 955
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 1 cut(s) 909
AjnI CCWGG 1 cut(s) 816
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AluBI AGCT 6 cut(s) 83, 310, 992, 1014, 1040, 1102
AluI AGCT 6 cut(s) 83, 310, 992, 1014, 1040, 1102
Alw26I GTCTC 1 cut(s) 238
Ama87I CYCGRG 2 cut(s) 442, 589
AoxI GGCC 7 cut(s) 14, 21, 31, 521, 820, 939, 1089
ApeKI GCWGC 2 cut(s) 736, 743
ApoI RAATTY 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AsiGI ACCGGT 1 cut(s) 332
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 6 cut(s) 344, 473, 820, 895, 939, 1090
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 2 cut(s) 442, 589
AvaII GGWCC 3 cut(s) 344, 473, 895
BanI GGYRCC 2 cut(s) 290, 674
BanII GRGCYC 3 cut(s) 443, 490, 1028
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 723, 730
BccI CCATC 5 cut(s) 146, 611, 619, 782, 1051
BceAI ACGGC 2 cut(s) 68, 1058
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 818
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 6 cut(s) 72, 149, 428, 477, 507, 1123
BfmI CTRYAG 1 cut(s) 737
BfoI RGCGCY 1 cut(s) 684
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 2 cut(s) 199, 662
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 4 cut(s) 294, 297, 737, 744
BlsI GCNGC 4 cut(s) 295, 298, 738, 745
Bme1390I CCNGG 2 cut(s) 134, 818
Bme18I GGWCC 3 cut(s) 344, 473, 895
BmeT110I CYCGRG 2 cut(s) 442, 589
BmgT120I GGNCC 6 cut(s) 344, 473, 820, 895, 939, 1090
BmiI GGNNCC 2 cut(s) 292, 676
BmrFI CCNGG 2 cut(s) 134, 818
BmsI GCATC 2 cut(s) 1060, 1119
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 28, 294, 816, 817
BsaWI WCCGGW 2 cut(s) 332, 346
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 140, 936, 937
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 722, 1111
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 818
BseCI ATCGAT 1 cut(s) 614
BseDI CCNNGG 4 cut(s) 28, 294, 816, 817
BseGI GGATG 2 cut(s) 603, 1066
BseLI CCNNNNNNNGG 4 cut(s) 139, 140, 936, 937
BseMI GCAATG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 722, 1111
BseRI GAGGAG 1 cut(s) 903
BseXI GCAGC 2 cut(s) 723, 730
BsgI GTGCAG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 7 cut(s) 16, 23, 33, 523, 822, 941, 1091
BshNI GGYRCC 2 cut(s) 290, 674
BshTI ACCGGT 1 cut(s) 332
BshVI ATCGAT 1 cut(s) 614
BsiHKCI CYCGRG 2 cut(s) 442, 589
BsiSI CCGG 4 cut(s) 20, 134, 333, 347
BslFI GGGAC 4 cut(s) 139, 156, 554, 705
BslI CCNNNNNNNGG 4 cut(s) 139, 140, 936, 937
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 4 cut(s) 139, 156, 554, 705
BsnI GGCC 7 cut(s) 16, 23, 33, 523, 822, 941, 1091
BsoBI CYCGRG 2 cut(s) 442, 589
Bsp1286I GDGCHC 3 cut(s) 443, 490, 1028
Bsp143I GATC 4 cut(s) 179, 214, 615, 978
BspACI CCGC 8 cut(s) 288, 294, 296, 339, 638, 669, 914, 986
BspANI GGCC 7 cut(s) 16, 23, 33, 523, 822, 941, 1091
BspDI ATCGAT 1 cut(s) 614
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 292, 676
BspMAI CTGCAG 1 cut(s) 741
BspMI ACCTGC 2 cut(s) 199, 662
BspQI GCTCTTC 1 cut(s) 1016
BspT107I GGYRCC 2 cut(s) 290, 674
BspTI CTTAAG 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 2 cut(s) 722, 1111
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 4 cut(s) 28, 294, 816, 817
BssMI GATC 4 cut(s) 179, 214, 615, 978
BssNI GRCGYC 1 cut(s) 316
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 3 cut(s) 653, 659, 1016
BstACI GRCGYC 1 cut(s) 316
BstAFI CTTAAG 1 cut(s) 530
BstC8I GCNNGC 6 cut(s) 206, 308, 370, 679, 741, 943
BstDEI CTNAG 3 cut(s) 518, 778, 807
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 603, 1066
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 4 cut(s) 182, 217, 618, 981
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 4 cut(s) 179, 214, 615, 978
BstMWI GCNNNNNNNGC 3 cut(s) 61, 378, 911
BstNI CCWGG 1 cut(s) 818
BstNSI RCATGY 1 cut(s) 959
BstSCI CCNGG 2 cut(s) 132, 816
BstSFI CTRYAG 1 cut(s) 737
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 723, 730
BstV2I GAAGAC 1 cut(s) 552
Bsu15I ATCGAT 1 cut(s) 614
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 7 cut(s) 16, 23, 33, 523, 822, 941, 1091
BsuTUI ATCGAT 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 603, 1066
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 379, 1092
BveI ACCTGC 2 cut(s) 199, 662
Cac8I GCNNGC 6 cut(s) 206, 308, 370, 679, 741, 943
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 6 cut(s) 344, 473, 820, 895, 939, 1090
Cfr42I CCGCGG 1 cut(s) 297
ClaI ATCGAT 1 cut(s) 614
CseI GACGC 1 cut(s) 588
Csp6I GTAC 1 cut(s) 1004
CspAI ACCGGT 1 cut(s) 332
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 4 cut(s) 413, 760, 838, 956
CviQI GTAC 1 cut(s) 1004
DdeI CTNAG 3 cut(s) 518, 778, 807
DpnI GATC 4 cut(s) 181, 216, 617, 980
DpnII GATC 4 cut(s) 179, 214, 615, 978
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
Eam1104I CTCTTC 3 cut(s) 653, 659, 1016
EarI CTCTTC 3 cut(s) 653, 659, 1016
Eco130I CCWWGG 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 523
Eco24I GRGCYC 3 cut(s) 443, 490, 1028
Eco32I GATATC 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 344, 473, 895
Eco57I CTGAAG 2 cut(s) 285, 420
Eco88I CYCGRG 2 cut(s) 442, 589
EcoRII CCWGG 1 cut(s) 816
EcoRV GATATC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 28
EcoT38I GRGCYC 3 cut(s) 443, 490, 1028
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 4 cut(s) 416, 763, 841, 959
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 4 cut(s) 139, 156, 554, 705
FatI CATG 4 cut(s) 412, 759, 837, 955
FauI CCCGC 1 cut(s) 979
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 294, 297, 737, 744
FokI GGATG 2 cut(s) 590, 1073
FriOI GRGCYC 3 cut(s) 443, 490, 1028
Fsp4HI GCNGC 4 cut(s) 294, 297, 737, 744
FspBI CTAG 6 cut(s) 72, 149, 428, 477, 507, 1123
GlaI GCGC 1 cut(s) 682
GluI GCNGC 4 cut(s) 294, 297, 737, 744
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 7 cut(s) 16, 23, 33, 523, 822, 941, 1091
HapII CCGG 4 cut(s) 20, 134, 333, 347
HgaI GACGC 1 cut(s) 588
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 4 cut(s) 416, 763, 841, 959
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 1038
HpaII CCGG 4 cut(s) 20, 134, 333, 347
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 88, 895, 1004
Hpy188I TCNGA 5 cut(s) 111, 270, 277, 787, 1115
Hpy188III TCNNGA 4 cut(s) 37, 589, 800, 860
Hpy8I GTNNAC 3 cut(s) 88, 895, 1004
HpyAV CCTTC 2 cut(s) 34, 388
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 368, 707, 739, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 378, 911
HpyF3I CTNAG 3 cut(s) 518, 778, 807
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 4 cut(s) 416, 763, 841, 959
HspAI GCGC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 214
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 4 cut(s) 179, 214, 615, 978
LguI GCTCTTC 1 cut(s) 1016
LmnI GCTCC 2 cut(s) 80, 989
Lsp1109I GCAGC 2 cut(s) 723, 730
LweI GCATC 2 cut(s) 1060, 1119
MaeI CTAG 6 cut(s) 72, 149, 428, 477, 507, 1123
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 155, 187, 374
MalI GATC 4 cut(s) 181, 216, 617, 980
MboI GATC 4 cut(s) 179, 214, 615, 978
MboII GAAGA 5 cut(s) 413, 552, 640, 646, 1033
MfeI CAATTG 1 cut(s) 1029
MhlI GDGCHC 3 cut(s) 443, 490, 1028
MluCI AATT 3 cut(s) 112, 974, 1029
MlyI GAGTC 6 cut(s) 121, 240, 254, 536, 601, 737
MseI TTAA 6 cut(s) 531, 549, 771, 900, 969, 1077
MslI CAYNNNNRTG 1 cut(s) 1115
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 4 cut(s) 20, 134, 333, 347
MspR9I CCNGG 2 cut(s) 134, 818
MunI CAATTG 1 cut(s) 1029
MvaI CCWGG 1 cut(s) 818
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 61, 378, 911
NciI CCSGG 1 cut(s) 134
NdeI CATATG 1 cut(s) 283
NdeII GATC 4 cut(s) 179, 214, 615, 978
NlaIII CATG 4 cut(s) 416, 763, 841, 959
NlaIV GGNNCC 2 cut(s) 292, 676
NmuCI GTSAC 2 cut(s) 155, 374
NspI RCATGY 1 cut(s) 959
PaqCI CACCTGC 1 cut(s) 662
PasI CCCWGGG 1 cut(s) 817
PceI AGGCCT 1 cut(s) 523
PciI ACATGT 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 1016
PfeI GAWTC 5 cut(s) 278, 716, 803, 812, 1082
PflFI GACNNNGTC 1 cut(s) 477
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 4 cut(s) 295, 298, 738, 745
PleI GAGTC 6 cut(s) 121, 239, 254, 536, 600, 736
PpsI GAGTC 6 cut(s) 121, 239, 254, 536, 600, 736
PscI ACATGT 1 cut(s) 955
PsiI TTATAA 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 816
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 2 cut(s) 292, 676
PspPI GGNCC 6 cut(s) 344, 473, 820, 895, 939, 1090
PstI CTGCAG 1 cut(s) 741
PsyI GACNNNGTC 1 cut(s) 477
RsaI GTAC 1 cut(s) 1005
RsaNI GTAC 1 cut(s) 1004
RseI CAYNNNNRTG 1 cut(s) 1115
SacII CCGCGG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 1016
SaqAI TTAA 6 cut(s) 531, 549, 771, 900, 969, 1077
SatI GCNGC 4 cut(s) 294, 297, 737, 744
Sau3AI GATC 4 cut(s) 179, 214, 615, 978
Sau96I GGNCC 6 cut(s) 344, 473, 820, 895, 939, 1090
SchI GAGTC 6 cut(s) 121, 240, 254, 536, 601, 737
ScrFI CCNGG 2 cut(s) 134, 818
SduI GDGCHC 3 cut(s) 443, 490, 1028
SfaNI GCATC 2 cut(s) 1060, 1119
SfcI CTRYAG 1 cut(s) 737
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 3 cut(s) 344, 473, 895
SmiMI CAYNNNNRTG 1 cut(s) 1115
SmlI CTYRAG 2 cut(s) 530, 710
SmoI CTYRAG 2 cut(s) 530, 710
Sse9I AATT 3 cut(s) 112, 974, 1029
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 8 cut(s) 288, 294, 296, 339, 638, 669, 914, 986
SspMI CTAG 6 cut(s) 72, 149, 428, 477, 507, 1123
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 2 cut(s) 132, 816
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 319
TaqI TCGA 5 cut(s) 38, 178, 408, 614, 960
TasI AATT 3 cut(s) 112, 974, 1029
TatI WGTACW 1 cut(s) 1003
TauI GCSGC 2 cut(s) 296, 299
TfiI GAWTC 5 cut(s) 278, 716, 803, 812, 1082
Tru1I TTAA 6 cut(s) 531, 549, 771, 900, 969, 1077
Tru9I TTAA 6 cut(s) 531, 549, 771, 900, 969, 1077
TscAI CASTG 2 cut(s) 379, 1092
TseFI GTSAC 2 cut(s) 155, 374
TseI GCWGC 2 cut(s) 736, 743
Tsp45I GTSAC 2 cut(s) 155, 374
TspDTI ATGAA 4 cut(s) 270, 935, 1050, 1095
TspRI CASTG 2 cut(s) 379, 1092
Tth111I GACNNNGTC 1 cut(s) 477
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 3 cut(s) 344, 473, 895
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XspI CTAG 6 cut(s) 72, 149, 428, 477, 507, 1123
ZraI GACGTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.