Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Forward (+)

30682230 .. 30685154

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG295200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGACAAGAGGCAACTGCACTTGAGGATTCTCCAGTTGAGTCCTTGCTGCAGGCTGCAAGATATGATGACATGGAAGTCATTACGTCCTTAGTATCCGATGGTGTTTCTCTTGATTCTAAGGATTCCCAAGGCCGAACAGCACTACACATGGCTTCTGCTAATGGTCATCTTGACATTGTGGAGTATCTTATCAGTAGAGGAGTGGATCTTAATGCTTCAAATGCGGAGATGAATACACCCCTACATTGGGCCTGCCTGAATGGACATGTCGAGGTGGTTAAGAAATTGATCTTGGCGGGAGCTAATGTAGGTGTACTAAACAGCCATGAGAAGAGCCCAATTGATGAAGCTTTGAGTGGGCAAAAGATGGATGTTATTGATGCCATTAATGAATCAGTGGCCCAAGTAGAGCTTACTGGCATCAGAGTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

145

Amino Acids

15.42

Weight (kDa)

4.5

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_4	PF13637	16 - 65	8.8e-12	Ankyrin repeats (many copies)
Ank_2	PF12796	16 - 105	4.3e-21	Ankyrin repeats (3 copies)
Ank_5	PF13857	31 - 83	1.3e-11	Ankyrin repeats (many copies)
Ank	PF00023	44 - 75	6.9e-10	Ankyrin repeat
Ank_3	PF13606	45 - 73	1.4e-07	Ankyrin repeat
Ank_4	PF13637	56 - 98	3.6e-12	Ankyrin repeats (many copies)
Ank	PF00023	79 - 108	1.2e-08	Ankyrin repeat
Ank_3	PF13606	79 - 104	1.7e-06	Ankyrin repeat
Ank_5	PF13857	79 - 118	8e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	2 cut(s)	227, 299
AclWI	GGATC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	249, 250
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	3 cut(s)	305, 353, 415
AluI	AGCT	3 cut(s)	305, 353, 415
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	3 cut(s)	133, 252, 402
ApeKI	GCWGC	2 cut(s)	49, 56
AseI	ATTAAT	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	252, 403
BanII	GRGCYC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	36, 43
BccI	CCATC	2 cut(s)	95, 364
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	50, 57
BlsI	GCNGC	2 cut(s)	51, 58
BmgT120I	GGNCC	2 cut(s)	252, 403
BmsI	GCATC	2 cut(s)	373, 432
BpmI	CTGGAG	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 250
Bse1I	ACTGG	2 cut(s)	35, 424
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	249, 250
BseNI	ACTGG	2 cut(s)	35, 424
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	36, 43
BshFI	GGCC	3 cut(s)	135, 254, 404
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	249, 250
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	135, 254, 404
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	208, 291
BspACI	CCGC	2 cut(s)	227, 299
BspANI	GGCC	3 cut(s)	135, 254, 404
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	35, 424
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	208, 291
BssT1I	CCWWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	54, 256
BstDEI	CTNAG	2 cut(s)	91, 120
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	211, 294
BstMBI	GATC	2 cut(s)	208, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	36, 43
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	135, 254, 404
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	54, 256
Cfr13I	GGNCC	2 cut(s)	252, 403
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	4 cut(s)	73, 151, 269, 329
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	91, 120
DpnI	GATC	2 cut(s)	210, 293
DpnII	GATC	2 cut(s)	208, 291
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	4 cut(s)	76, 154, 272, 332
FaiI	YATR	5 cut(s)	66, 74, 152, 270, 330
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	72, 150, 268, 328
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	50, 57
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	50, 57
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	2 cut(s)	50, 57
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	135, 254, 404
Hin1II	CATG	4 cut(s)	76, 154, 272, 332
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	5 cut(s)	29, 41, 116, 125, 395
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	100, 428
Hpy188III	TCNNGA	2 cut(s)	113, 173
Hpy8I	GTNNAC	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	20, 52, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	91, 120
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	76, 154, 272, 332
Kzo9I	GATC	2 cut(s)	208, 291
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	5 cut(s)	38, 48, 268, 272, 405
Lsp1109I	GCAGC	2 cut(s)	36, 43
LweI	GCATC	2 cut(s)	373, 432
MaeI	CTAG	1 cut(s)	436
MaeII	ACGT	1 cut(s)	86
MalI	GATC	2 cut(s)	210, 293
MboI	GATC	2 cut(s)	208, 291
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	2 cut(s)	287, 342
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	4, 19, 194, 268
MseI	TTAA	3 cut(s)	213, 282, 390
MslI	CAYNNNNRTG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	208, 291
NlaIII	CATG	4 cut(s)	76, 154, 272, 332
NspI	RCATGY	1 cut(s)	272
PciI	ACATGT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	29, 116, 125, 395
PkrI	GCNGC	2 cut(s)	51, 58
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PscI	ACATGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	252, 403
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	213, 282, 390
SatI	GCNGC	2 cut(s)	50, 57
Sau3AI	GATC	2 cut(s)	208, 291
Sau96I	GGNCC	2 cut(s)	252, 403
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	6 cut(s)	89, 279, 307, 316, 355, 417
SfaNI	GCATC	2 cut(s)	373, 432
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	287, 342
SsiI	CCGC	2 cut(s)	227, 299
SspMI	CTAG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	273
TasI	AATT	2 cut(s)	287, 342
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	4 cut(s)	29, 116, 125, 395
Tru1I	TTAA	3 cut(s)	213, 282, 390
Tru9I	TTAA	3 cut(s)	213, 282, 390
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	2 cut(s)	49, 56
TspDTI	ATGAA	3 cut(s)	248, 363, 408
TspRI	CASTG	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.