Rh2BG228600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006700
Physical Location & Seq
Forward (+)
22386210 .. 22391721
5512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG228600.1

Sequence Viewer

Length: 279 bp
ATGGTGGGACTCTCCCGTGGAGTAGCGACTCCAGGAGAGTTTGGCCGATCGTGGGAGATTACCAGCGGCGGAGGTCTGGTGGTTTGCTTCTGGTATGCTAGTAGTGACTACGACGGTTTGAGGAAGGCTGAAGACGTCGAGCATGGCAAGATTTCCCTGGCTGTAATTGCCAAAGTGTCTGAAATCCACAGCACATGTGGGAATACTGGTAATTACATAGACGACATCCTTAGGTCAAATAAGATTGGATCACGAACCCTACCTGGCATCAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.82

Weight (kDa)

6.71

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AciI CCGC 2 cut(s) 66, 69
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 194
AjnI CCWGG 3 cut(s) 31, 156, 262
AlwI GGATC 1 cut(s) 256
AoxI GGCC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 138
BciT130I CCWGG 3 cut(s) 33, 158, 264
BfaI CTAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 3 cut(s) 33, 158, 264
BmrFI CCNGG 3 cut(s) 33, 158, 264
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 16, 156
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 230
BseBI CCWGG 3 cut(s) 33, 158, 264
BseDI CCNNGG 2 cut(s) 16, 156
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 47, 248
BspACI CCGC 2 cut(s) 66, 69
BspANI GGCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 16, 156
BssMI GATC 2 cut(s) 47, 248
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 3 cut(s) 33, 158, 264
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 2 cut(s) 50, 251
BstMBI GATC 2 cut(s) 47, 248
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 3 cut(s) 33, 158, 264
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 3 cut(s) 31, 156, 262
BstV2I GAAGAC 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 225
CviAII CATG 2 cut(s) 143, 195
CviJI RGCY 3 cut(s) 45, 128, 161
CviKI_1 RGCY 3 cut(s) 45, 128, 161
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 49, 250
DpnII GATC 2 cut(s) 47, 248
EaeI YGGCCR 1 cut(s) 43
EciI GGCGGA 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 230
EcoRII CCWGG 3 cut(s) 31, 156, 262
FaeI CATG 2 cut(s) 146, 198
FaiI YATR 4 cut(s) 96, 144, 196, 218
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 142, 194
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 146, 198
HinfI GANTC 2 cut(s) 9, 28
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 252
Hpy99I CGWCG 2 cut(s) 116, 140
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 146, 198
Kzo9I GATC 2 cut(s) 47, 248
LpnPI CCDG 9 cut(s) 18, 45, 62, 76, 76, 143, 170, 192, 249
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 49, 250
MboI GATC 2 cut(s) 47, 248
MboII GAAGA 1 cut(s) 143
MluCI AATT 2 cut(s) 165, 211
MlyI GAGTC 2 cut(s) 3, 22
MnlI CCTC 2 cut(s) 65, 114
MspA1I CMGCKG 1 cut(s) 66
MspR9I CCNGG 3 cut(s) 33, 158, 264
MvaI CCWGG 3 cut(s) 33, 158, 264
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 47, 248
NlaIII CATG 2 cut(s) 146, 198
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 198
PciI ACATGT 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 31
PkrI GCNGC 1 cut(s) 68
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 2 cut(s) 3, 22
PpsI GAGTC 2 cut(s) 3, 22
PscI ACATGT 1 cut(s) 194
Psp6I CCWGG 3 cut(s) 31, 156, 262
PspGI CCWGG 3 cut(s) 31, 156, 262
PvuI CGATCG 1 cut(s) 50
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 47, 248
SchI GAGTC 2 cut(s) 3, 22
ScrFI CCNGG 3 cut(s) 33, 158, 264
SetI ASST 5 cut(s) 76, 138, 236, 265, 278
Sse9I AATT 2 cut(s) 165, 211
SsiI CCGC 2 cut(s) 66, 69
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 31, 156, 262
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 165, 211
TauI GCSGC 1 cut(s) 69
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
XceI RCATGY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XspI CTAG 1 cut(s) 99
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.