Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Reverse (-)

3525579 .. 3527724

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTAGGCTGTTGTCTACTCAGTCTTCTCAGCATCTCTCTCCATGGAGGAGCTGTGAACGACATCCCAATACCAAATCGGGATTTGAACGGTGGGACTCTCCTAGTACGTGGACAACTAGGGGATCTGATTATGCTTGGGCAGATTTCAACGCGGGTGTGAAATCGGGTTCGTGGTGCGGTGGAGTAGCGGCTCCAGGAGAGTTTGGCCGTTCGTGGGAGATTACCGGTGGTGGAGGTGTGCTTTATAATGGAAAGGAAATAGCAGTGAAAAGACTATCGAAGAATTCAGGCCAAGGAATTGAAGAGTTTAGGAATGAGGTTGTATTGATTGCGAAACTCCAACATAGGAACCTTGTCAGGATTTTAGGTTGTTGTGTTCAAGATGATGAGAAGATGCTAATCTATGAATACGTCCCAAACAAAAGTTTGGACTCTTTCATTTTCAAAAACAGAGCTCTATTAGATTGGGCAAGACGCTTCAAGATCATTTGTGGAATTGCTAGAGGAATCTTATATCTTCATCAAGATTCGAGATTAAGAATCATCCATAGAGATCTAAAAGCAAGTAATGTTCTTCTAGATGCTTCTATGAACCCCAAAATTGCAGATTTTGGTATGGCTAGAATATTTAGAGGGGACCAAAGTGAAGCAAACACCAATCGTGTTGTTGGAACATACTTCCGCATTTTACTACTGGAAATTATTACCGGCAGAAAGAATACTGGTTATTACAATGAGGCTTATCCCGAGTCAAATTTGGTTGGACATGTTTGGAACTTGTGGAGAGAAGGTAATTCCTCGGAAATTGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

273

Amino Acids

30.82

Weight (kDa)

9.19

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	82 - 219	1.5e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	84 - 226	3.1e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccI	GTMKAC	2 cut(s)	17, 813
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	155, 180, 191, 685
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	286, 757
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	769
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	6 cut(s)	89, 151, 305, 383, 448, 484
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	54, 458
AluI	AGCT	2 cut(s)	54, 458
Alw21I	GWGCWC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	2 cut(s)	208, 292
ApoI	RAATTY	2 cut(s)	286, 757
AsiGI	ACCGGT	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	640
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	460
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	5 cut(s)	105, 120, 504, 581, 624
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	3 cut(s)	195, 353, 641
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	43, 387, 574
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	44, 295, 801
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 778, 808
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	2 cut(s)	227, 710
Bse1I	ACTGG	2 cut(s)	702, 730
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	3 cut(s)	44, 295, 801
BseGI	GGATG	2 cut(s)	64, 546
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	35, 44
BseNI	ACTGG	2 cut(s)	702, 730
BseRI	GAGGAG	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	210, 294
BshTI	ACCGGT	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	2 cut(s)	228, 711
BslFI	GGGAC	3 cut(s)	110, 401, 653
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmFI	GGGAC	3 cut(s)	110, 401, 653
BsnI	GGCC	2 cut(s)	210, 294
BsoBI	CYCGRG	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	125, 486, 556
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	4 cut(s)	155, 180, 191, 685
BspANI	GGCC	2 cut(s)	210, 294
BspCNI	CTCAG	2 cut(s)	34, 43
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	3 cut(s)	195, 353, 641
BspPI	GGATC	1 cut(s)	133
BsrFI	RCCGGY	2 cut(s)	227, 710
BsrI	ACTGG	2 cut(s)	702, 730
BssAI	RCCGGY	2 cut(s)	227, 710
BssECI	CCNNGG	3 cut(s)	44, 295, 801
BssMI	GATC	3 cut(s)	125, 486, 556
BssT1I	CCWWGG	2 cut(s)	44, 295
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	21, 30
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	64, 546
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	3 cut(s)	128, 489, 559
BstMBI	GATC	3 cut(s)	125, 486, 556
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	125, 556
BstYI	RGATCY	2 cut(s)	125, 556
BsuRI	GGCC	2 cut(s)	210, 294
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	64, 546
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cfr10I	RCCGGY	2 cut(s)	227, 710
Cfr13I	GGNCC	1 cut(s)	640
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	108
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	2 cut(s)	45, 770
CviJI	RGCY	8 cut(s)	10, 54, 194, 210, 294, 458, 623, 743
CviKI_1	RGCY	8 cut(s)	10, 54, 194, 210, 294, 458, 623, 743
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	21, 30
DpnI	GATC	3 cut(s)	127, 488, 558
DpnII	GATC	3 cut(s)	125, 486, 556
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	2 cut(s)	44, 295
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	44, 295
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	2 cut(s)	44, 295
FaeI	CATG	2 cut(s)	48, 773
FaqI	GGGAC	3 cut(s)	110, 401, 653
FatI	CATG	2 cut(s)	44, 769
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	2 cut(s)	17, 813
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	51, 533
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	5 cut(s)	105, 120, 504, 581, 624
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	210, 294
HapII	CCGG	2 cut(s)	228, 711
HgaI	GACGC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	48, 773
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	6 cut(s)	98, 434, 510, 530, 543, 752
HpaII	CCGG	2 cut(s)	228, 711
Hpy166II	GTNNAC	4 cut(s)	18, 59, 114, 814
Hpy188I	TCNGA	2 cut(s)	130, 805
Hpy188III	TCNNGA	8 cut(s)	81, 361, 383, 484, 527, 534, 581, 749
Hpy8I	GTNNAC	4 cut(s)	18, 59, 114, 814
HpyAV	CCTTC	1 cut(s)	785
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	2 cut(s)	110, 414
HpyCH4V	TGCA	1 cut(s)	608
HpyF3I	CTNAG	2 cut(s)	21, 30
HpySE526I	ACGT	2 cut(s)	110, 414
Hsp92II	CATG	2 cut(s)	48, 773
Kzo9I	GATC	3 cut(s)	125, 486, 556
LmnI	GCTCC	2 cut(s)	51, 199
LpnPI	CCDG	8 cut(s)	183, 210, 241, 276, 346, 683, 711, 724
LweI	GCATC	3 cut(s)	43, 387, 574
MaeI	CTAG	5 cut(s)	105, 120, 504, 581, 624
MaeII	ACGT	2 cut(s)	110, 414
MalI	GATC	3 cut(s)	127, 488, 558
MboI	GATC	3 cut(s)	125, 486, 556
MboII	GAAGA	6 cut(s)	18, 295, 317, 406, 512, 569
MflI	RGATCY	2 cut(s)	125, 556
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	8 cut(s)	286, 300, 498, 603, 702, 757, 796, 807
MlyI	GAGTC	3 cut(s)	92, 428, 761
MmeI	TCCRAC	3 cut(s)	367, 652, 745
MnlI	CCTC	7 cut(s)	42, 230, 313, 500, 629, 733, 811
MseI	TTAA	1 cut(s)	539
MspI	CCGG	2 cut(s)	228, 711
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	125, 486, 556
NlaIII	CATG	2 cut(s)	48, 773
NlaIV	GGNNCC	3 cut(s)	195, 353, 641
NspI	RCATGY	1 cut(s)	773
PciI	ACATGT	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	510, 530, 543
PfoI	TCCNGGA	1 cut(s)	196
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	3 cut(s)	92, 428, 760
PpsI	GAGTC	3 cut(s)	92, 428, 760
Ppu21I	YACGTR	1 cut(s)	111
PscI	ACATGT	1 cut(s)	769
PsiI	TTATAA	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	3 cut(s)	195, 353, 641
PspPI	GGNCC	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	125, 556
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	812
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	125, 486, 556
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	3 cut(s)	92, 428, 761
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	9 cut(s)	56, 113, 241, 324, 357, 373, 417, 460, 796
SfaNI	GCATC	3 cut(s)	43, 387, 574
SinI	GGWCC	1 cut(s)	640
Sse9I	AATT	8 cut(s)	286, 300, 498, 603, 702, 757, 796, 807
SsiI	CCGC	4 cut(s)	155, 180, 191, 685
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	5 cut(s)	105, 120, 504, 581, 624
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	44, 295
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	2 cut(s)	113, 417
TaqI	TCGA	3 cut(s)	281, 533, 813
TasI	AATT	8 cut(s)	286, 300, 498, 603, 702, 757, 796, 807
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	510, 530, 543
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	1 cut(s)	273
TspDTI	ATGAA	4 cut(s)	423, 430, 512, 608
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	2 cut(s)	286, 757
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	773
XmiI	GTMKAC	2 cut(s)	17, 813
XspI	CTAG	5 cut(s)	105, 120, 504, 581, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.