Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008046.1

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Forward (+)

12221 .. 15966

Gene Structure 3746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008046.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgggttctctctctggtaggctcttcctagggtttctaggcggcatctatgcacgatggttttggattggcctccggccttccttggcctctcgagagggtggcaacggcttcgtttgccattctctagtatgggtaggctgttgtctactcagtattctctgcatctctctccatggaggagctgtgaacgaaatccctataccagatcagaatttgagcaatgggactctcccggtaaagggacgactagatggtgacatgccgcagtggagcagcagcttcaggcgagcttggacgtctgtgggagattatcggctgcggtggtccggtggtttgcttctgccatcgatcaacctcaaactaaacccacccccctttctcttcctctccctctccgcaggtgccagcgccaaaatggtacaagaggcaactgcacttgaggattctccagttgagtccttgctgcaggctgcaagatatgatgacatggaagtcattaagtccttagtatccgatggtgtttctcttgattctaaggattcccagggccgaacagcactacacatggcttctgctaatggtcatcttgacattgtggagtatcttatcagtagaggagtggaccttaatgcttcaaatgcggagatgaatacacccctacattgggcctgcctgaatggacatgtcgaggtggttaagaaattgatcttggcgggagctaatgtaggtgtactaaacagctatgagaagagcccaattgatgaagctttgagtgggcaaaagatggatgttattgatgccgttaatgaatcagtggcccaagtagagcttactggcatcagagtgtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

284

Amino Acids

30.5

Weight (kDa)

5.51

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
AasI	GACNNNNNNGTC	1 cut(s)	494
AatII	GACGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	148
AciI	CCGC	6 cut(s)	42, 266, 322, 399, 644, 716
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	2 cut(s)	423, 735
AfiI	CCNNNNNNNGG	4 cut(s)	241, 242, 666, 667
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	1 cut(s)	639
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AluBI	AGCT	7 cut(s)	185, 282, 293, 722, 744, 770, 832
AluI	AGCT	7 cut(s)	185, 282, 293, 722, 744, 770, 832
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	6 cut(s)	70, 77, 87, 550, 669, 819
ApeKI	GCWGC	5 cut(s)	276, 279, 319, 466, 473
ApoI	RAATTY	1 cut(s)	214
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	5 cut(s)	327, 550, 625, 669, 820
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	327, 625
AvrII	CCTAGG	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	758
BbvI	GCAGC	5 cut(s)	288, 291, 306, 453, 460
BccI	CCATC	5 cut(s)	51, 248, 355, 512, 781
BceAI	ACGGC	2 cut(s)	124, 788
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	5 cut(s)	29, 38, 128, 251, 853
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	523
BisI	GCNGC	7 cut(s)	43, 266, 277, 280, 320, 467, 474
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	7 cut(s)	44, 267, 278, 281, 321, 468, 475
Bme1390I	CCNGG	2 cut(s)	236, 548
Bme18I	GGWCC	2 cut(s)	327, 625
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	5 cut(s)	327, 550, 625, 669, 820
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	236, 548
BmsI	GCATC	4 cut(s)	54, 174, 790, 849
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	5 cut(s)	28, 84, 175, 546, 547
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 711, 741
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 242, 666, 667
Bse1I	ACTGG	2 cut(s)	452, 841
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	350
BseDI	CCNNGG	5 cut(s)	28, 84, 175, 546, 547
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	4 cut(s)	241, 242, 666, 667
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	452, 841
BseRI	GAGGAG	2 cut(s)	195, 633
BseXI	GCAGC	5 cut(s)	288, 291, 306, 453, 460
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	6 cut(s)	72, 79, 89, 552, 671, 821
BshNI	GGYRCC	1 cut(s)	404
BshVI	ATCGAT	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	76, 236, 330
BslFI	GGGAC	2 cut(s)	241, 258
BslI	CCNNNNNNNGG	4 cut(s)	241, 242, 666, 667
BsmFI	GGGAC	2 cut(s)	241, 258
BsnI	GGCC	6 cut(s)	72, 79, 89, 552, 671, 821
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	3 cut(s)	208, 351, 708
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	6 cut(s)	42, 266, 322, 399, 644, 716
BspANI	GGCC	6 cut(s)	72, 79, 89, 552, 671, 821
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	392
BspQI	GCTCTTC	2 cut(s)	29, 746
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	452, 841
BssECI	CCNNGG	5 cut(s)	28, 84, 175, 546, 547
BssMI	GATC	3 cut(s)	208, 351, 708
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	3 cut(s)	28, 84, 175
Bst2UI	CCWGG	1 cut(s)	548
Bst6I	CTCTTC	3 cut(s)	29, 389, 746
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	291, 409, 471, 673
BstDEI	CTNAG	3 cut(s)	152, 508, 537
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	796
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	3 cut(s)	211, 354, 711
BstMBI	GATC	3 cut(s)	208, 351, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 641
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	265, 689
BstSCI	CCNGG	2 cut(s)	234, 546
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	5 cut(s)	288, 291, 306, 453, 460
Bsu15I	ATCGAT	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	6 cut(s)	72, 79, 89, 552, 671, 821
BsuTUI	ATCGAT	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	796
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	275, 822
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	4 cut(s)	291, 409, 471, 673
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	5 cut(s)	327, 550, 625, 669, 820
ClaI	ATCGAT	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	422, 734
CviAII	CATG	5 cut(s)	176, 262, 490, 568, 686
CviQI	GTAC	2 cut(s)	422, 734
DdeI	CTNAG	3 cut(s)	152, 508, 537
DpnI	GATC	3 cut(s)	210, 353, 710
DpnII	GATC	3 cut(s)	208, 351, 708
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
Eam1104I	CTCTTC	3 cut(s)	29, 389, 746
EarI	CTCTTC	3 cut(s)	29, 389, 746
Eco130I	CCWWGG	3 cut(s)	28, 84, 175
Eco24I	GRGCYC	1 cut(s)	758
Eco47I	GGWCC	2 cut(s)	327, 625
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	3 cut(s)	28, 84, 175
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	3 cut(s)	28, 84, 175
FaeI	CATG	5 cut(s)	179, 265, 493, 571, 689
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	2 cut(s)	241, 258
FatI	CATG	5 cut(s)	175, 261, 489, 567, 685
FauI	CCCGC	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	7 cut(s)	43, 266, 277, 280, 320, 467, 474
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	7 cut(s)	43, 266, 277, 280, 320, 467, 474
FspBI	CTAG	5 cut(s)	29, 38, 128, 251, 853
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	7 cut(s)	43, 266, 277, 280, 320, 467, 474
GsuI	CTGGAG	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	6 cut(s)	72, 79, 89, 552, 671, 821
HapII	CCGG	3 cut(s)	76, 236, 330
HhaI	GCGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	5 cut(s)	179, 265, 493, 571, 689
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	6 cut(s)	229, 446, 458, 533, 542, 812
HpaII	CCGG	3 cut(s)	76, 236, 330
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	4 cut(s)	149, 190, 625, 734
Hpy188I	TCNGA	3 cut(s)	213, 517, 845
Hpy188III	TCNNGA	4 cut(s)	93, 95, 530, 590
Hpy8I	GTNNAC	4 cut(s)	149, 190, 625, 734
HpyAV	CCTTC	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	53, 165, 437, 469, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 641
HpyF3I	CTNAG	3 cut(s)	152, 508, 537
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	179, 265, 493, 571, 689
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	208, 351, 708
LguI	GCTCTTC	2 cut(s)	29, 746
LmnI	GCTCC	3 cut(s)	182, 273, 719
Lsp1109I	GCAGC	5 cut(s)	288, 291, 306, 453, 460
LweI	GCATC	4 cut(s)	54, 174, 790, 849
MaeI	CTAG	5 cut(s)	29, 38, 128, 251, 853
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	210, 353, 710
MboI	GATC	3 cut(s)	208, 351, 708
MboII	GAAGA	3 cut(s)	16, 376, 763
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	3 cut(s)	214, 704, 759
MlyI	GAGTC	2 cut(s)	223, 467
MseI	TTAA	4 cut(s)	501, 630, 699, 807
MslI	CAYNNNNRTG	1 cut(s)	845
MspI	CCGG	3 cut(s)	76, 236, 330
MspR9I	CCNGG	2 cut(s)	236, 548
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	117, 641
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	208, 351, 708
NlaIII	CATG	5 cut(s)	179, 265, 493, 571, 689
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	2 cut(s)	265, 689
PaeR7I	CTCGAG	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	392
PasI	CCCWGGG	1 cut(s)	547
PciI	ACATGT	1 cut(s)	685
PciSI	GCTCTTC	2 cut(s)	29, 746
PfeI	GAWTC	4 cut(s)	446, 533, 542, 812
PkrI	GCNGC	7 cut(s)	44, 267, 278, 281, 321, 468, 475
PleI	GAGTC	2 cut(s)	223, 466
PpsI	GAGTC	2 cut(s)	223, 466
PscI	ACATGT	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	5 cut(s)	327, 550, 625, 669, 820
PstI	CTGCAG	1 cut(s)	471
RsaI	GTAC	2 cut(s)	423, 735
RsaNI	GTAC	2 cut(s)	422, 734
RseI	CAYNNNNRTG	1 cut(s)	845
SapI	GCTCTTC	2 cut(s)	29, 746
SaqAI	TTAA	4 cut(s)	501, 630, 699, 807
SatI	GCNGC	7 cut(s)	43, 266, 277, 280, 320, 467, 474
Sau3AI	GATC	3 cut(s)	208, 351, 708
Sau96I	GGNCC	5 cut(s)	327, 550, 625, 669, 820
SchI	GAGTC	2 cut(s)	223, 467
ScrFI	CCNGG	2 cut(s)	236, 548
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	4 cut(s)	54, 174, 790, 849
SfcI	CTRYAG	1 cut(s)	467
Sfr274I	CTCGAG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	327, 625
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	2 cut(s)	93, 440
SmoI	CTYRAG	2 cut(s)	93, 440
Sse9I	AATT	3 cut(s)	214, 704, 759
SsiI	CCGC	6 cut(s)	42, 266, 322, 399, 644, 716
SspMI	CTAG	5 cut(s)	29, 38, 128, 251, 853
StyD4I	CCNGG	2 cut(s)	234, 546
StyI	CCWWGG	3 cut(s)	28, 84, 175
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	94, 350, 690
TasI	AATT	3 cut(s)	214, 704, 759
TatI	WGTACW	1 cut(s)	733
TauI	GCSGC	2 cut(s)	45, 268
TfiI	GAWTC	4 cut(s)	446, 533, 542, 812
Tru1I	TTAA	4 cut(s)	501, 630, 699, 807
Tru9I	TTAA	4 cut(s)	501, 630, 699, 807
TscAI	CASTG	2 cut(s)	275, 822
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	5 cut(s)	276, 279, 319, 466, 473
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	665, 780, 825
TspRI	CASTG	2 cut(s)	275, 822
VpaK11BI	GGWCC	2 cut(s)	327, 625
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	2 cut(s)	265, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	5 cut(s)	29, 38, 128, 251, 853
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.