Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006700

Physical Location & Seq

Genomic Coordinates Forward (+)

30255017 .. 30258265

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG301100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGACAAGAGGCAACTGCACTTGAGGATTCTCCAGTTGAGTCCTTGCTGCAGGCTGCAAGATATGATGACATGGAAGTCATTACGTCCTTAGTATCCGATGGTGTTTCTCTTGATTCTAAGGATTCCCAGGGCCGAACAGCACTACACATGGCTTCTGCTAATGGTCATCTTGACATTGTGGAGTATCTTATCAGTAGAGGAGTGGATCTTAATGCTTCAAATGCGGAGATGAATACACCCCTACATTGGGCCTGCCTGAATGGACATGTCGAGGTGGTTAAGAAATTGATCTTGGCGGGAGCTAATGTAGCTGTACTAAACAGCTATGAGAAGAGCCCAATTGATGAAGCTTTGAGTGGGCAAAAGATGGATGTTATTGATGCCATTAATGAATCAGTGGCCCAAGTAGAGCTTACTGGCATCAGAGTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030688 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042274 GO:0042886 GO:0044085 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

145

Amino Acids

15.46

Weight (kDa)

4.42

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_4	PF13637	16 - 65	8.8e-12	Ankyrin repeats (many copies)
Ank_2	PF12796	16 - 105	6.7e-21	Ankyrin repeats (3 copies)
Ank_5	PF13857	31 - 83	1.3e-11	Ankyrin repeats (many copies)
Ank	PF00023	44 - 75	6.9e-10	Ankyrin repeat
Ank_3	PF13606	45 - 73	1.4e-07	Ankyrin repeat
Ank_4	PF13637	56 - 98	2e-12	Ankyrin repeats (many copies)
Ank	PF00023	79 - 108	1.2e-08	Ankyrin repeat
Ank_3	PF13606	79 - 105	1.3e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12320
fragaria_vesca	FvH4_1g25870
malus_domestica	MD03G1167000.v1.1 MD11G1186200.v1.1
prunus_persica	Prupe.4G267400_v2.0.a1 Prupe.4G267400_v2.0.a1
pyrus_communis	pycom03g12240 pycom12g08670
rosa_chinensis	RchiOBHm_Chr3g0485011
rosa_laevigata	RLG00000000958 RLG00000004598 RLG00000008951 RLG00000023176 RLG00000023289 RLG00000031269
rosa_multiflora	Rmu_sc0006040.1_g000021 Rmu_sc0007628.1_g000001 Rmu_sc0008046.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397260 Rroxscaffold_6G00413790
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh2BG228600 Rh3AG265500 Rh3BG301100 Rh3CG299400 Rh3DG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	2 cut(s)	227, 299
AclWI	GGATC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	249, 250
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	5 cut(s)	305, 314, 327, 353, 415
AluI	AGCT	5 cut(s)	305, 314, 327, 353, 415
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	3 cut(s)	133, 252, 402
ApeKI	GCWGC	2 cut(s)	49, 56
AseI	ATTAAT	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	133, 252, 403
BanII	GRGCYC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	36, 43
BccI	CCATC	2 cut(s)	95, 364
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	50, 57
BlsI	GCNGC	2 cut(s)	51, 58
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	133, 252, 403
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	373, 432
BpmI	CTGGAG	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	129, 130
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 250
Bse1I	ACTGG	2 cut(s)	35, 424
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	129, 130
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	249, 250
BseNI	ACTGG	2 cut(s)	35, 424
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	36, 43
BshFI	GGCC	3 cut(s)	135, 254, 404
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	249, 250
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	135, 254, 404
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	208, 291
BspACI	CCGC	2 cut(s)	227, 299
BspANI	GGCC	3 cut(s)	135, 254, 404
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	35, 424
BssECI	CCNNGG	2 cut(s)	129, 130
BssMI	GATC	2 cut(s)	208, 291
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	54, 256
BstDEI	CTNAG	2 cut(s)	91, 120
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	211, 294
BstMBI	GATC	2 cut(s)	208, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 311
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	36, 43
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	135, 254, 404
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	54, 256
Cfr13I	GGNCC	3 cut(s)	133, 252, 403
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	3 cut(s)	73, 151, 269
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	91, 120
DpnI	GATC	2 cut(s)	210, 293
DpnII	GATC	2 cut(s)	208, 291
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	341
FaeI	CATG	3 cut(s)	76, 154, 272
FaiI	YATR	5 cut(s)	66, 74, 152, 270, 330
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	72, 150, 268
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	50, 57
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	50, 57
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	2 cut(s)	50, 57
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	135, 254, 404
Hin1II	CATG	3 cut(s)	76, 154, 272
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	6 cut(s)	29, 41, 116, 125, 395, 429
Hpy188I	TCNGA	2 cut(s)	100, 428
Hpy188III	TCNNGA	2 cut(s)	113, 173
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	20, 52, 59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 311
HpyF3I	CTNAG	2 cut(s)	91, 120
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	76, 154, 272
Kzo9I	GATC	2 cut(s)	208, 291
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	7 cut(s)	38, 48, 116, 143, 268, 272, 405
Lsp1109I	GCAGC	2 cut(s)	36, 43
LweI	GCATC	2 cut(s)	373, 432
MaeI	CTAG	1 cut(s)	436
MaeII	ACGT	1 cut(s)	86
MalI	GATC	2 cut(s)	210, 293
MboI	GATC	2 cut(s)	208, 291
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	2 cut(s)	287, 342
MlyI	GAGTC	2 cut(s)	50, 438
MnlI	CCTC	4 cut(s)	4, 19, 194, 268
MseI	TTAA	3 cut(s)	213, 282, 390
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	224, 311
NdeII	GATC	2 cut(s)	208, 291
NlaIII	CATG	3 cut(s)	76, 154, 272
NspI	RCATGY	1 cut(s)	272
PasI	CCCWGGG	1 cut(s)	130
PciI	ACATGT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	29, 116, 125, 395
PkrI	GCNGC	2 cut(s)	51, 58
PleI	GAGTC	2 cut(s)	49, 437
PpsI	GAGTC	2 cut(s)	49, 437
PscI	ACATGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	3 cut(s)	133, 252, 403
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	213, 282, 390
SatI	GCNGC	2 cut(s)	50, 57
Sau3AI	GATC	2 cut(s)	208, 291
Sau96I	GGNCC	3 cut(s)	133, 252, 403
SchI	GAGTC	2 cut(s)	50, 438
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	7 cut(s)	89, 279, 307, 316, 329, 355, 417
SfaNI	GCATC	2 cut(s)	373, 432
SfcI	CTRYAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	287, 342
SsiI	CCGC	2 cut(s)	227, 299
SspMI	CTAG	1 cut(s)	436
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	273
TasI	AATT	2 cut(s)	287, 342
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	4 cut(s)	29, 116, 125, 395
Tru1I	TTAA	3 cut(s)	213, 282, 390
Tru9I	TTAA	3 cut(s)	213, 282, 390
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	2 cut(s)	49, 56
TspDTI	ATGAA	3 cut(s)	248, 363, 408
TspRI	CASTG	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.