FvH4_2g02780

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
2196805 .. 2200654
3850 bp
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UTR
Exon/CDS
Intron
FvH4_2g02780.t3

Sequence Viewer

Length: 1251 bp
ATGGCATCTCGAGACCATTCTCACTTGCCAAGCCAAACAAAGAAACTCCCTCTCTTCTTCCCTCTCCTCTCCCTCCTCCTCTTCGTCTCCATCTTCGCCGTCCTCTCCTCCATCAGAACCACCTCCTCCGCTCCTTCCCAGCCTCGCAACTCCCTCGAGTTCATCAAACCCCCCGGATCCGACCCGGCCCGGTCATGCGACTACTCCGACGGAGCCTGGATCTACGACCCGAACGCGTCTCCCAAGTACGACCACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCGGCAACAAGTCCAACGGCCGTGAACTCACCAAGTGGCGGTGGAAGCCTAACGGCTGTGATCTCCCGACGTTTGATCCCGTTAGGTTTCTCCATATGTACAGAAACACCAGCATTGGGTTTATTGGTGATTCCTTGAACCGGAATATGTTTGTTGCGCTGTTCTGTTCGTTGAAACGAGTGTCGAGTGAGGTGAAGAAGTGGCGGCCGTTTGGTGCTGACCGGGGGTTTACATTTCTTCAGTACAATGTGACGCTGGCCTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCGGCCAATGCTAATGGCGGCGTGCTGGAATCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCAGCAGACACATGGGCAGAGTCTCTCAGCTTTCATGACATTCTGATCTTCAACACAGGACACTGGTGGTGGGCTCCTGCAAAGTTCGACCCTATAAACTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCGGTACTTCCTGATGTTGGCTTTGATATGGTTTTGAAACACATGGTAATGTTTGTGGAGAAGAGAATGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGAGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTATTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATGTGGAGGCACGACTCGTGAATCAACACCTTTACAAGTTCCTTCAGGAGTCGGGCTTACATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCCGCAGCTGGTGGGAAGAAGCATGATGATTGTATGCACTGGTGCTTACCAGGTTTAACAGATACTTGGAATGACTTGTTCATAGCGCAGTTAAACAATGTCAAATTTAGAACAAAATAA

Protein Analysis

417

Amino Acids

47.43

Weight (kDa)

8.9

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 68 - 121 4.6e-14 PMR5 N terminal Domain
PC-Esterase PF13839 122 - 409 3.7e-68 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 266
Acc36I ACCTGC 2 cut(s) 266, 973
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 236
AciI CCGC 5 cut(s) 129, 331, 496, 609, 1134
AclWI GGATC 4 cut(s) 171, 184, 227, 362
AcoI YGGCCR 3 cut(s) 310, 497, 594
AcsI RAATTY 2 cut(s) 890, 1235
AcuI CTGAAG 2 cut(s) 515, 1049
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 5 cut(s) 248, 392, 536, 810, 901
AfiI CCNNNNNNNGG 5 cut(s) 330, 408, 432, 558, 821
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 9 cut(s) 274, 430, 466, 715, 782, 841, 923, 989, 1006
AjnI CCWGG 3 cut(s) 215, 877, 1180
AleI CACNNNNGTG 1 cut(s) 1104
AluBI AGCT 2 cut(s) 693, 1139
AluI AGCT 2 cut(s) 693, 1139
Alw26I GTCTC 5 cut(s) 6, 91, 243, 690, 924
AlwI GGATC 4 cut(s) 171, 184, 227, 362
Ama87I CYCGRG 2 cut(s) 9, 155
AoxI GGCC 5 cut(s) 186, 310, 497, 549, 594
ApeKI GCWGC 1 cut(s) 1136
ApoI RAATTY 2 cut(s) 890, 1235
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AspLEI GCGC 2 cut(s) 451, 1219
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 4 cut(s) 174, 185, 190, 515
AsuHPI GGTGA 4 cut(s) 313, 431, 496, 900
AvaI CYCGRG 2 cut(s) 9, 155
BamHI GGATCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 739
BauI CACGAG 1 cut(s) 1037
BbvI GCAGC 1 cut(s) 1148
BccI CCATC 4 cut(s) 98, 119, 1134, 1138
BceAI ACGGC 5 cut(s) 83, 297, 325, 361, 484
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 3 cut(s) 217, 879, 1182
BcnI CCSGG 4 cut(s) 174, 185, 190, 515
BcoDI GTCTC 5 cut(s) 6, 91, 243, 690, 924
BfaI CTAG 1 cut(s) 912
BfuAI ACCTGC 2 cut(s) 266, 973
BglII AGATCT 1 cut(s) 267
BisI GCNGC 3 cut(s) 497, 610, 1137
BlsI GCNGC 3 cut(s) 498, 611, 1138
Bme1390I CCNGG 7 cut(s) 174, 185, 190, 217, 515, 879, 1182
BmeT110I CYCGRG 2 cut(s) 9, 155
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 5 cut(s) 178, 214, 738, 801, 938
BmrFI CCNGG 7 cut(s) 174, 185, 190, 217, 515, 879, 1182
BmsI GCATC 2 cut(s) 14, 1111
BpuMI CCSGG 4 cut(s) 174, 185, 190, 515
BsaBI GATNNNNATC 1 cut(s) 1125
BsaI GGTCTC 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 172, 514, 940
BsaWI WCCGGW 2 cut(s) 432, 805
Bsc4I CCNNNNNNNGG 5 cut(s) 330, 408, 432, 558, 821
Bse118I RCCGGY 1 cut(s) 957
Bse1I ACTGG 3 cut(s) 731, 938, 1175
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 3 cut(s) 217, 879, 1182
BseDI CCNNGG 3 cut(s) 172, 514, 940
BseGI GGATG 2 cut(s) 1126, 1130
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 5 cut(s) 330, 408, 432, 558, 821
BseMII CTCAG 2 cut(s) 703, 1094
BseNI ACTGG 3 cut(s) 731, 938, 1175
BseRI GAGGAG 6 cut(s) 56, 65, 68, 97, 115, 942
BseX3I CGGCCG 2 cut(s) 310, 497
BseXI GCAGC 1 cut(s) 1148
BseYI CCCAGC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 2 cut(s) 313, 500
BshFI GGCC 5 cut(s) 188, 312, 499, 551, 596
BsiEI CGRYCG 2 cut(s) 313, 500
BsiHKCI CYCGRG 2 cut(s) 9, 155
BsiSI CCGG 8 cut(s) 174, 185, 190, 294, 433, 514, 806, 958
BslI CCNNNNNNNGG 5 cut(s) 330, 408, 432, 558, 821
BsmAI GTCTC 5 cut(s) 6, 91, 243, 690, 924
BsmBI CGTCTC 2 cut(s) 91, 243
BsnI GGCC 5 cut(s) 188, 312, 499, 551, 596
Bso31I GGTCTC 1 cut(s) 6
BsoBI CYCGRG 2 cut(s) 9, 155
Bsp1286I GDGCHC 1 cut(s) 739
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 6 cut(s) 176, 219, 267, 352, 367, 708
BspACI CCGC 5 cut(s) 129, 331, 496, 609, 1134
BspANI GGCC 5 cut(s) 188, 312, 499, 551, 596
BspCNI CTCAG 2 cut(s) 702, 1095
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 5 cut(s) 178, 214, 738, 801, 938
BspMI ACCTGC 2 cut(s) 266, 973
BspPI GGATC 4 cut(s) 171, 184, 227, 362
BspTNI GGTCTC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 957
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 3 cut(s) 731, 938, 1175
BssAI RCCGGY 1 cut(s) 957
BssECI CCNNGG 3 cut(s) 172, 514, 940
BssMI GATC 6 cut(s) 176, 219, 267, 352, 367, 708
BssSI CACGAG 1 cut(s) 1037
BssT1I CCWWGG 1 cut(s) 940
Bst2BI CACGAG 1 cut(s) 1037
Bst2UI CCWGG 3 cut(s) 217, 879, 1182
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 4 cut(s) 59, 86, 860, 1001
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 549, 614
BstDEI CTNAG 2 cut(s) 689, 1103
BstF5I GGATG 2 cut(s) 1126, 1130
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 2 cut(s) 451, 1219
BstKTI GATC 6 cut(s) 179, 222, 270, 355, 370, 711
BstMAI GTCTC 5 cut(s) 6, 91, 243, 690, 924
BstMBI GATC 6 cut(s) 176, 219, 267, 352, 367, 708
BstMCI CGRYCG 2 cut(s) 313, 500
BstMWI GCNNNNNNNGC 3 cut(s) 285, 294, 337
BstNI CCWGG 3 cut(s) 217, 879, 1182
BstSCI CCNGG 7 cut(s) 172, 183, 188, 215, 513, 877, 1180
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 1148
BstX2I RGATCY 3 cut(s) 176, 219, 267
BstYI RGATCY 3 cut(s) 176, 219, 267
BstZI CGGCCG 2 cut(s) 310, 497
BsuRI GGCC 5 cut(s) 188, 312, 499, 551, 596
BtsCI GGATG 2 cut(s) 1126, 1130
BtsIMutI CAGTG 2 cut(s) 724, 1168
BveI ACCTGC 2 cut(s) 266, 973
Cac8I GCNNGC 2 cut(s) 549, 614
CciI TCATGA 1 cut(s) 697
CfoI GCGC 2 cut(s) 451, 1219
Cfr10I RCCGGY 1 cut(s) 957
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 2 cut(s) 225, 553
CsiI ACCWGGT 1 cut(s) 1180
Csp6I GTAC 5 cut(s) 247, 391, 535, 809, 900
CviAII CATG 5 cut(s) 195, 675, 698, 847, 1154
CviQI GTAC 5 cut(s) 247, 391, 535, 809, 900
DdeI CTNAG 2 cut(s) 689, 1103
DpnI GATC 6 cut(s) 178, 221, 269, 354, 369, 710
DpnII GATC 6 cut(s) 176, 219, 267, 352, 367, 708
DraIII CACNNNGTG 1 cut(s) 327
EaeI YGGCCR 3 cut(s) 310, 497, 594
EagI CGGCCG 2 cut(s) 310, 497
Eam1104I CTCTTC 4 cut(s) 59, 86, 860, 1001
EarI CTCTTC 4 cut(s) 59, 86, 860, 1001
EclXI CGGCCG 2 cut(s) 310, 497
Eco130I CCWWGG 1 cut(s) 940
Eco24I GRGCYC 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 6
Eco52I CGGCCG 2 cut(s) 310, 497
Eco57I CTGAAG 2 cut(s) 515, 1049
Eco88I CYCGRG 2 cut(s) 9, 155
EcoRII CCWGG 3 cut(s) 215, 877, 1180
EcoT14I CCWWGG 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 940
Esp3I CGTCTC 2 cut(s) 91, 243
FaeI CATG 5 cut(s) 198, 678, 701, 850, 1157
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 5 cut(s) 194, 674, 697, 846, 1153
FauNDI CATATG 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 497, 610, 1137
FokI GGATG 2 cut(s) 1113, 1117
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 3 cut(s) 497, 610, 1137
FspBI CTAG 1 cut(s) 912
GlaI GCGC 2 cut(s) 450, 1218
GluI GCNGC 3 cut(s) 497, 610, 1137
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 5 cut(s) 188, 312, 499, 551, 596
HapII CCGG 8 cut(s) 174, 185, 190, 294, 433, 514, 806, 958
HgaI GACGC 2 cut(s) 225, 553
HhaI GCGC 2 cut(s) 451, 1219
Hin1II CATG 5 cut(s) 198, 678, 701, 850, 1157
Hin6I GCGC 2 cut(s) 449, 1217
HinP1I GCGC 2 cut(s) 449, 1217
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 6 cut(s) 422, 620, 683, 1035, 1042, 1070
HpaII CCGG 8 cut(s) 174, 185, 190, 294, 433, 514, 806, 958
HphI GGTGA 4 cut(s) 313, 431, 496, 900
Hpy166II GTNNAC 3 cut(s) 317, 522, 658
Hpy188I TCNGA 6 cut(s) 116, 181, 208, 561, 708, 1115
Hpy188III TCNNGA 7 cut(s) 9, 11, 358, 698, 815, 1039, 1067
Hpy8I GTNNAC 3 cut(s) 317, 522, 658
Hpy99I CGWCG 2 cut(s) 212, 364
HpyAV CCTTC 3 cut(s) 144, 917, 1073
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 5 cut(s) 261, 288, 743, 884, 1168
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 294, 337
HpyF3I CTNAG 2 cut(s) 689, 1103
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 5 cut(s) 198, 678, 701, 850, 1157
HspAI GCGC 2 cut(s) 449, 1217
Kzo9I GATC 6 cut(s) 176, 219, 267, 352, 367, 708
LmnI GCTCC 3 cut(s) 136, 212, 742
Lsp1109I GCAGC 1 cut(s) 1148
LweI GCATC 2 cut(s) 14, 1111
MabI ACCWGGT 1 cut(s) 1180
MaeI CTAG 1 cut(s) 912
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 541, 578, 953
MalI GATC 6 cut(s) 178, 221, 269, 354, 369, 710
MbiI CCGCTC 1 cut(s) 131
MboI GATC 6 cut(s) 176, 219, 267, 352, 367, 708
MflI RGATCY 3 cut(s) 176, 219, 267
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 3 cut(s) 283, 890, 1235
MluI ACGCGT 1 cut(s) 234
MlyI GAGTC 3 cut(s) 692, 1029, 1079
MmeI TCCRAC 3 cut(s) 204, 231, 330
MseI TTAA 2 cut(s) 1187, 1223
MslI CAYNNNNRTG 2 cut(s) 851, 1104
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 8 cut(s) 174, 185, 190, 294, 433, 514, 806, 958
MspR9I CCNGG 7 cut(s) 174, 185, 190, 217, 515, 879, 1182
MvaI CCWGG 3 cut(s) 217, 879, 1182
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 285, 294, 337
NciI CCSGG 4 cut(s) 174, 185, 190, 515
NdeI CATATG 1 cut(s) 387
NdeII GATC 6 cut(s) 176, 219, 267, 352, 367, 708
NlaIII CATG 5 cut(s) 198, 678, 701, 850, 1157
NlaIV GGNNCC 5 cut(s) 178, 214, 738, 801, 938
NmuCI GTSAC 1 cut(s) 541
OliI CACNNNNGTG 1 cut(s) 1104
PaeR7I CTCGAG 2 cut(s) 9, 155
PagI TCATGA 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 266
PfeI GAWTC 3 cut(s) 422, 620, 1042
PkrI GCNGC 3 cut(s) 498, 611, 1138
PleI GAGTC 3 cut(s) 691, 1029, 1078
PpsI GAGTC 3 cut(s) 691, 1029, 1078
Psp6I CCWGG 3 cut(s) 215, 877, 1180
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 3 cut(s) 215, 877, 1180
PspN4I GGNNCC 5 cut(s) 178, 214, 738, 801, 938
PspPI GGNCC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 155
PsuI RGATCY 3 cut(s) 176, 219, 267
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 5 cut(s) 248, 392, 536, 810, 901
RsaNI GTAC 5 cut(s) 247, 391, 535, 809, 900
RseI CAYNNNNRTG 2 cut(s) 851, 1104
SaqAI TTAA 2 cut(s) 1187, 1223
SatI GCNGC 3 cut(s) 497, 610, 1137
Sau3AI GATC 6 cut(s) 176, 219, 267, 352, 367, 708
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 3 cut(s) 692, 1029, 1079
ScrFI CCNGG 7 cut(s) 174, 185, 190, 217, 515, 879, 1182
SduI GDGCHC 1 cut(s) 739
SexAI ACCWGGT 1 cut(s) 1180
SfaNI GCATC 2 cut(s) 14, 1111
Sfr274I CTCGAG 2 cut(s) 9, 155
SlaI CTCGAG 2 cut(s) 9, 155
SmiMI CAYNNNNRTG 2 cut(s) 851, 1104
SmlI CTYRAG 2 cut(s) 9, 155
SmoI CTYRAG 2 cut(s) 9, 155
Sse9I AATT 3 cut(s) 283, 890, 1235
SsiI CCGC 5 cut(s) 129, 331, 496, 609, 1134
SspMI CTAG 1 cut(s) 912
StyD4I CCNGG 7 cut(s) 172, 183, 188, 215, 513, 877, 1180
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 365
TaqI TCGA 4 cut(s) 10, 156, 476, 750
TasI AATT 3 cut(s) 283, 890, 1235
TatI WGTACW 2 cut(s) 390, 534
TauI GCSGC 2 cut(s) 499, 612
TfiI GAWTC 3 cut(s) 422, 620, 1042
Tru1I TTAA 2 cut(s) 1187, 1223
Tru9I TTAA 2 cut(s) 1187, 1223
TscAI CASTG 2 cut(s) 731, 1175
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 1136
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 151, 686, 887, 1201
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 2 cut(s) 731, 1175
XapI RAATTY 2 cut(s) 890, 1235
XcmI CCANNNNNNNNNTGG 1 cut(s) 672
XhoI CTCGAG 2 cut(s) 9, 155
XspI CTAG 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.