Rroxscaffold_180G00433570

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
Physical Location & Seq
Reverse (-)
629593 .. 632865
3273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433570.1

Sequence Viewer

Length: 1248 bp
ATGCCTAGCTTCCTGCATCGACTATGCGTGCTGGAGGCTCGGCGTGGTAGTTGTGATGCTATGGCATCAGGGCTGTGGAAGGTTTTTAATGGCGGGGAGATGATTAAACACATCCTCCGTTCCCTCCCAACCTCACAGCTCCCTCGAATTCCGGAAACCCCCGGATCCGACCCGACGGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAGCCTGGATCTACGACCCGAATGCGTCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGTTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCCGCTAGGTTTCTTGAGATGTACAGAGACACCAGCATTGGGTTTGTTGGTGATTCCTTGAACCGGAATATGTTTGTTTCGCTGTTCTGTTCGTTGAAACGCGTGTCGAGTGAAGTAAAGAAGTGGCGGCCGGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCAGCTAATTCTAACGGTGGAGTGCTGGAGTCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTTGACACATGGGCAGAATCTCTAAGCTTTCATGACATTCTGATCTTCAACACAGGGCACTGGTATTGGGCTCCTGCAAAGTTTGACCCTGTGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGATGTTGGCCTCGATATGGTTATGAAACACATGGTAATGTTTGTGGAGAAGAGACTGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATATAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTGTTCATAGCACAGTTAAATAATGTCAGATTTAGAACAAAATAA

Protein Analysis

415

Amino Acids

47.19

Weight (kDa)

8.44

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 64 - 117 2.3e-14 PMR5 N terminal Domain
PC-Esterase PF13839 118 - 405 1.9e-68 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 263
Acc36I ACCTGC 2 cut(s) 263, 970
AccB7I CCANNNNNTGG 1 cut(s) 1084
AccII CGCG 3 cut(s) 312, 468, 513
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 6 cut(s) 93, 310, 356, 369, 493, 513
AclWI GGATC 4 cut(s) 159, 172, 224, 359
AcoI YGGCCR 3 cut(s) 183, 307, 494
AcsI RAATTY 2 cut(s) 147, 887
AcuI CTGAAG 2 cut(s) 512, 890
AfaI GTAC 5 cut(s) 245, 389, 533, 807, 898
AfiI CCNNNNNNNGG 7 cut(s) 405, 429, 818, 829, 1054, 1065, 1084
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 8 cut(s) 271, 427, 463, 712, 779, 920, 986, 1003
AjnI CCWGG 3 cut(s) 212, 874, 1177
AleI CACNNNNGTG 1 cut(s) 1101
AluBI AGCT 5 cut(s) 9, 139, 593, 690, 1136
AluI AGCT 5 cut(s) 9, 139, 593, 690, 1136
Alw26I GTCTC 4 cut(s) 240, 387, 624, 859
AlwI GGATC 4 cut(s) 159, 172, 224, 359
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 5 cut(s) 183, 307, 494, 820, 1056
ApeKI GCWGC 1 cut(s) 1133
ApoI RAATTY 2 cut(s) 147, 887
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AspS9I GGNCC 2 cut(s) 189, 1057
AsuC2I CCSGG 2 cut(s) 162, 187
AsuHPI GGTGA 3 cut(s) 428, 897, 938
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 723
BamHI GGATCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 736
BauI CACGAG 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 1145
BccI CCATC 3 cut(s) 200, 1131, 1135
BceAI ACGGC 2 cut(s) 322, 343
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 3 cut(s) 214, 876, 1179
BcnI CCSGG 2 cut(s) 162, 187
BcoDI GTCTC 4 cut(s) 240, 387, 624, 859
BfaI CTAG 3 cut(s) 6, 372, 909
BfmI CTRYAG 1 cut(s) 1131
BfuAI ACCTGC 2 cut(s) 263, 970
BglII AGATCT 1 cut(s) 264
BisI GCNGC 3 cut(s) 310, 494, 1134
BlsI GCNGC 3 cut(s) 311, 495, 1135
BmcAI AGTACT 1 cut(s) 807
Bme1390I CCNGG 5 cut(s) 162, 187, 214, 876, 1179
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 189, 1057
BmiI GGNNCC 7 cut(s) 166, 180, 190, 211, 735, 798, 935
BmrFI CCNGG 5 cut(s) 162, 187, 214, 876, 1179
BmsI GCATC 4 cut(s) 25, 46, 74, 1108
BpmI CTGGAG 3 cut(s) 53, 635, 786
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 401, 1082
BpuMI CCSGG 2 cut(s) 162, 187
BsaBI GATNNNNATC 1 cut(s) 1122
BsaJI CCNNGG 2 cut(s) 160, 937
BsaWI WCCGGW 3 cut(s) 151, 429, 661
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 7 cut(s) 405, 429, 818, 829, 1054, 1065, 1084
Bse118I RCCGGY 3 cut(s) 181, 496, 954
Bse1I ACTGG 4 cut(s) 728, 803, 935, 1172
Bse8I GATNNNNATC 1 cut(s) 1122
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 3 cut(s) 214, 876, 1179
BseDI CCNNGG 2 cut(s) 160, 937
BseGI GGATG 2 cut(s) 111, 1123
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 7 cut(s) 405, 429, 818, 829, 1054, 1065, 1084
BseMII CTCAG 1 cut(s) 1091
BseNI ACTGG 4 cut(s) 728, 803, 935, 1172
BseSI GKGCMC 1 cut(s) 723
BseX3I CGGCCG 3 cut(s) 183, 307, 494
BseXI GCAGC 1 cut(s) 1145
Bsh1236I CGCG 3 cut(s) 312, 468, 513
Bsh1285I CGRYCG 3 cut(s) 186, 310, 497
BshFI GGCC 5 cut(s) 185, 309, 496, 822, 1058
BsiEI CGRYCG 3 cut(s) 186, 310, 497
BsiSI CCGG 8 cut(s) 152, 162, 182, 186, 430, 497, 662, 955
BslI CCNNNNNNNGG 7 cut(s) 405, 429, 818, 829, 1054, 1065, 1084
BsmAI GTCTC 4 cut(s) 240, 387, 624, 859
BsmBI CGTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 5 cut(s) 185, 309, 496, 822, 1058
Bsp1286I GDGCHC 2 cut(s) 723, 736
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
BspACI CCGC 6 cut(s) 93, 310, 356, 369, 493, 513
BspANI GGCC 5 cut(s) 185, 309, 496, 822, 1058
BspCNI CTCAG 1 cut(s) 1092
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 3 cut(s) 312, 468, 513
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 7 cut(s) 166, 180, 190, 211, 735, 798, 935
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 2 cut(s) 263, 970
BspPI GGATC 4 cut(s) 159, 172, 224, 359
BsrFI RCCGGY 3 cut(s) 181, 496, 954
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 4 cut(s) 728, 803, 935, 1172
BssAI RCCGGY 3 cut(s) 181, 496, 954
BssECI CCNNGG 2 cut(s) 160, 937
BssMI GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
BssSI CACGAG 1 cut(s) 1034
BssT1I CCWWGG 1 cut(s) 937
Bst2BI CACGAG 1 cut(s) 1034
Bst2UI CCWGG 3 cut(s) 214, 876, 1179
Bst4CI ACNGT 4 cut(s) 347, 581, 605, 1218
Bst6I CTCTTC 2 cut(s) 857, 998
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 4 cut(s) 29, 183, 546, 1175
BstDEI CTNAG 3 cut(s) 339, 686, 1100
BstENI CCTNNNNNAGG 1 cut(s) 1052
BstF5I GGATG 2 cut(s) 111, 1123
BstFNI CGCG 3 cut(s) 312, 468, 513
BstKTI GATC 7 cut(s) 167, 219, 267, 352, 367, 511, 708
BstMAI GTCTC 4 cut(s) 240, 387, 624, 859
BstMBI GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
BstMCI CGRYCG 3 cut(s) 186, 310, 497
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 3 cut(s) 214, 876, 1179
BstSCI CCNGG 5 cut(s) 160, 185, 212, 874, 1177
BstSFI CTRYAG 1 cut(s) 1131
BstSLI GKGCMC 1 cut(s) 723
BstUI CGCG 3 cut(s) 312, 468, 513
BstV1I GCAGC 1 cut(s) 1145
BstX2I RGATCY 3 cut(s) 164, 216, 264
BstYI RGATCY 3 cut(s) 164, 216, 264
BstZI CGGCCG 3 cut(s) 183, 307, 494
BsuRI GGCC 5 cut(s) 185, 309, 496, 822, 1058
BtsCI GGATG 2 cut(s) 111, 1123
BtsIMutI CAGTG 3 cut(s) 343, 721, 1165
BveI ACCTGC 2 cut(s) 263, 970
Cac8I GCNNGC 4 cut(s) 29, 183, 546, 1175
CciI TCATGA 1 cut(s) 694
Cfr10I RCCGGY 3 cut(s) 181, 496, 954
Cfr13I GGNCC 2 cut(s) 189, 1057
CseI GACGC 1 cut(s) 222
Csp6I GTAC 5 cut(s) 244, 388, 532, 806, 897
CviAII CATG 3 cut(s) 672, 695, 844
CviQI GTAC 5 cut(s) 244, 388, 532, 806, 897
DdeI CTNAG 3 cut(s) 339, 686, 1100
DpnI GATC 7 cut(s) 166, 218, 266, 351, 366, 510, 707
DpnII GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
EaeI YGGCCR 3 cut(s) 183, 307, 494
EagI CGGCCG 3 cut(s) 183, 307, 494
Eam1104I CTCTTC 2 cut(s) 857, 998
EarI CTCTTC 2 cut(s) 857, 998
EclXI CGGCCG 3 cut(s) 183, 307, 494
Eco130I CCWWGG 1 cut(s) 937
Eco24I GRGCYC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 189
Eco52I CGGCCG 3 cut(s) 183, 307, 494
Eco57I CTGAAG 2 cut(s) 512, 890
EcoNI CCTNNNNNAGG 1 cut(s) 1052
EcoO109I RGGNCCY 2 cut(s) 189, 1057
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 3 cut(s) 212, 874, 1177
EcoT14I CCWWGG 1 cut(s) 937
EcoT38I GRGCYC 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 3 cut(s) 675, 698, 847
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 3 cut(s) 671, 694, 843
FauI CCCGC 4 cut(s) 86, 363, 376, 506
Fnu4HI GCNGC 3 cut(s) 310, 494, 1134
FokI GGATG 2 cut(s) 98, 1110
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 3 cut(s) 310, 494, 1134
FspBI CTAG 3 cut(s) 6, 372, 909
GluI GCNGC 3 cut(s) 310, 494, 1134
GsuI CTGGAG 3 cut(s) 53, 635, 786
HaeIII GGCC 5 cut(s) 185, 309, 496, 822, 1058
HapII CCGG 8 cut(s) 152, 162, 182, 186, 430, 497, 662, 955
HgaI GACGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 675, 698, 847
HincII GTYRAC 2 cut(s) 655, 667
HindII GTYRAC 2 cut(s) 655, 667
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 5 cut(s) 419, 617, 680, 1032, 1039
HpaII CCGG 8 cut(s) 152, 162, 182, 186, 430, 497, 662, 955
HphI GGTGA 3 cut(s) 428, 897, 938
Hpy166II GTNNAC 3 cut(s) 519, 655, 667
Hpy188I TCNGA 6 cut(s) 169, 205, 558, 705, 1112, 1232
Hpy188III TCNNGA 5 cut(s) 152, 380, 695, 812, 1036
Hpy8I GTNNAC 3 cut(s) 519, 655, 667
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 73, 914
HpyCH4III ACNGT 4 cut(s) 347, 581, 605, 1218
HpyCH4V TGCA 7 cut(s) 16, 258, 285, 740, 881, 1133, 1165
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 3 cut(s) 339, 686, 1100
Hsp92II CATG 3 cut(s) 675, 698, 847
Kpn2I TCCGGA 1 cut(s) 151
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
LmnI GCTCC 4 cut(s) 144, 178, 209, 739
Lsp1109I GCAGC 1 cut(s) 1145
LweI GCATC 4 cut(s) 25, 46, 74, 1108
MaeI CTAG 3 cut(s) 6, 372, 909
MaeIII GTNAC 4 cut(s) 538, 575, 926, 950
MalI GATC 7 cut(s) 166, 218, 266, 351, 366, 510, 707
MboI GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
MboII GAAGA 8 cut(s) 259, 518, 700, 874, 985, 998, 1015, 1156
MflI RGATCY 3 cut(s) 164, 216, 264
MhlI GDGCHC 2 cut(s) 723, 736
MluCI AATT 4 cut(s) 147, 280, 595, 887
MluI ACGCGT 1 cut(s) 466
MlyI GAGTC 2 cut(s) 626, 1026
MmeI TCCRAC 3 cut(s) 192, 257, 327
MroI TCCGGA 1 cut(s) 151
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 3 cut(s) 87, 105, 1220
MslI CAYNNNNRTG 2 cut(s) 848, 1101
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 8 cut(s) 152, 162, 182, 186, 430, 497, 662, 955
MspR9I CCNGG 5 cut(s) 162, 187, 214, 876, 1179
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 3 cut(s) 214, 876, 1179
MvnI CGCG 3 cut(s) 312, 468, 513
MwoI GCNNNNNNNGC 1 cut(s) 291
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 2 cut(s) 162, 187
NdeII GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 3 cut(s) 675, 698, 847
NlaIV GGNNCC 7 cut(s) 166, 180, 190, 211, 735, 798, 935
NmeAIII GCCGAG 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 926
OliI CACNNNNGTG 1 cut(s) 1101
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 263
PctI GAATGC 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 419, 680, 1039
PflMI CCANNNNNTGG 1 cut(s) 1084
PkrI GCNGC 3 cut(s) 311, 495, 1135
PleI GAGTC 2 cut(s) 625, 1026
PpsI GAGTC 2 cut(s) 625, 1026
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 212, 874, 1177
PspGI CCWGG 3 cut(s) 212, 874, 1177
PspN4I GGNNCC 7 cut(s) 166, 180, 190, 211, 735, 798, 935
PspPI GGNCC 2 cut(s) 189, 1057
PspPPI RGGWCCY 1 cut(s) 189
PstI CTGCAG 1 cut(s) 1135
PsuI RGATCY 3 cut(s) 164, 216, 264
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 5 cut(s) 245, 389, 533, 807, 898
RsaNI GTAC 5 cut(s) 244, 388, 532, 806, 897
RseI CAYNNNNRTG 2 cut(s) 848, 1101
SaqAI TTAA 3 cut(s) 87, 105, 1220
SatI GCNGC 3 cut(s) 310, 494, 1134
Sau3AI GATC 7 cut(s) 164, 216, 264, 349, 364, 508, 705
Sau96I GGNCC 2 cut(s) 189, 1057
ScaI AGTACT 1 cut(s) 807
SchI GAGTC 2 cut(s) 626, 1026
ScrFI CCNGG 5 cut(s) 162, 187, 214, 876, 1179
SduI GDGCHC 2 cut(s) 723, 736
SfaNI GCATC 4 cut(s) 25, 46, 74, 1108
SfcI CTRYAG 1 cut(s) 1131
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 848, 1101
SmlI CTYRAG 2 cut(s) 380, 1061
SmoI CTYRAG 2 cut(s) 380, 1061
Sse9I AATT 4 cut(s) 147, 280, 595, 887
SsiI CCGC 6 cut(s) 93, 310, 356, 369, 493, 513
SspMI CTAG 3 cut(s) 6, 372, 909
StyD4I CCNGG 5 cut(s) 160, 185, 212, 874, 1177
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 4 cut(s) 347, 581, 605, 1218
TaqI TCGA 5 cut(s) 19, 145, 363, 473, 825
TasI AATT 4 cut(s) 147, 280, 595, 887
TatI WGTACW 3 cut(s) 387, 531, 805
TauI GCSGC 2 cut(s) 312, 496
TfiI GAWTC 3 cut(s) 419, 680, 1039
Tru1I TTAA 3 cut(s) 87, 105, 1220
Tru9I TTAA 3 cut(s) 87, 105, 1220
TscAI CASTG 3 cut(s) 350, 728, 1172
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 1 cut(s) 1133
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 3 cut(s) 683, 851, 1198
TspGWI ACGGA 2 cut(s) 107, 191
TspRI CASTG 3 cut(s) 350, 728, 1172
Van91I CCANNNNNTGG 1 cut(s) 1084
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 1052
XapI RAATTY 2 cut(s) 147, 887
XspI CTAG 3 cut(s) 6, 372, 909
ZrmI AGTACT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.