Rh6DG032000

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
3105873 .. 3108374
2502 bp
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UTR
Exon/CDS
Intron
Rh6DG032000.1

Sequence Viewer

Length: 1260 bp
ATGGCATCGAGAGACCTCTCTCACTTGCCAAACCAGACAAAGAAACTCCCTCTCTTCTTCCCTCTCCTCTCCCTCCTCTGCTTCATTTCCATCTTCGCCGTTCTCTCCTCCATCAGAAAGACCTCCTCCGTTCCTCCCCAACCTCACAGCTCCCTCGAATTCCGGAAACCCCCCGGATCCGACCCGACGGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAGCCTGGATCCACGACCCGAATGCTTCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCATCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCTACTAGGTTTCTTGAGATGTACAGAGACACCAGCATTGGGTTTATTGGTGATTCCTTGAACCGGAATATGTTTGTTTCGCTGTTCTGTTCGCTGAAACGCGTGTCGAGTGAAGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTATAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTATGGTAGGTGGTCAGCCAATTCTAATGGTGGCGCGCTGGAATCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTTGACACATGGGCAGAATCTCTTAGCTTTCATGACATTCTGATCTTCAACACAGGGCACTGGTATTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGATTCCTCCAGTACTTCCTGATGTTGGCCTCGATATGGTTATGAAACACATGGTAGTGTTTGCGGAGAAGAGATTGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCACGACTCGTGAATCAACACCTTTACAAGACCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGATTTGTTCATAGCACAGTTAAATAGTGTCAAATTTAGAACAAAATGA

Protein Analysis

419

Amino Acids

47.61

Weight (kDa)

8.73

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 68 - 121 3.2e-14 PMR5 N terminal Domain
PC-Esterase PF13839 122 - 409 1.6e-67 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 2 cut(s) 275, 982
AccB7I CCANNNNNTGG 1 cut(s) 1096
AccII CGCG 4 cut(s) 324, 480, 525, 623
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 5 cut(s) 322, 368, 505, 525, 869
AclWI GGATC 5 cut(s) 171, 184, 223, 236, 371
AcoI YGGCCR 3 cut(s) 195, 319, 506
AcsI RAATTY 3 cut(s) 158, 899, 1244
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 4 cut(s) 257, 401, 819, 910
AfiI CCNNNNNNNGG 6 cut(s) 417, 441, 830, 841, 1077, 1096
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 8 cut(s) 283, 439, 724, 791, 883, 932, 998, 1015
AjnI CCWGG 3 cut(s) 224, 886, 1189
AleI CACNNNNGTG 1 cut(s) 1113
AluBI AGCT 3 cut(s) 150, 702, 1148
AluI AGCT 3 cut(s) 150, 702, 1148
Alw26I GTCTC 2 cut(s) 6, 399
AlwI GGATC 5 cut(s) 171, 184, 223, 236, 371
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 4 cut(s) 195, 319, 506, 832
ApeKI GCWGC 1 cut(s) 1145
ApoI RAATTY 3 cut(s) 158, 899, 1244
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AspLEI GCGC 2 cut(s) 623, 625
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 2 cut(s) 174, 199
AsuHPI GGTGA 3 cut(s) 440, 909, 950
AvaII GGWCC 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 735
BamHI GGATCC 2 cut(s) 176, 228
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 1046
BbvI GCAGC 1 cut(s) 1157
BccI CCATC 5 cut(s) 98, 119, 212, 1143, 1147
BceAI ACGGC 3 cut(s) 83, 334, 355
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 3 cut(s) 226, 888, 1191
BcnI CCSGG 2 cut(s) 174, 199
BcoDI GTCTC 2 cut(s) 6, 399
BfaI CTAG 2 cut(s) 384, 921
BfmI CTRYAG 1 cut(s) 1143
BfuAI ACCTGC 2 cut(s) 275, 982
BglII AGATCT 1 cut(s) 276
BisI GCNGC 3 cut(s) 322, 506, 1146
BlsI GCNGC 3 cut(s) 323, 507, 1147
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 5 cut(s) 174, 199, 226, 888, 1191
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 7 cut(s) 178, 192, 202, 223, 230, 747, 947
BmrFI CCNGG 5 cut(s) 174, 199, 226, 888, 1191
BmsI GCATC 2 cut(s) 14, 1120
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 413, 1094
BpuMI CCSGG 2 cut(s) 174, 199
BsaBI GATNNNNATC 1 cut(s) 1134
BsaI GGTCTC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 172, 949
BsaWI WCCGGW 3 cut(s) 162, 441, 673
Bsc4I CCNNNNNNNGG 6 cut(s) 417, 441, 830, 841, 1077, 1096
Bse118I RCCGGY 2 cut(s) 193, 966
Bse1I ACTGG 5 cut(s) 509, 740, 815, 947, 1184
Bse8I GATNNNNATC 1 cut(s) 1134
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 3 cut(s) 226, 888, 1191
BseDI CCNNGG 2 cut(s) 172, 949
BseGI GGATG 1 cut(s) 1135
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 6 cut(s) 417, 441, 830, 841, 1077, 1096
BseMII CTCAG 1 cut(s) 1103
BseNI ACTGG 5 cut(s) 509, 740, 815, 947, 1184
BsePI GCGCGC 1 cut(s) 621
BseRI GAGGAG 4 cut(s) 56, 65, 97, 115
BseSI GKGCMC 1 cut(s) 735
BseX3I CGGCCG 2 cut(s) 195, 319
BseXI GCAGC 1 cut(s) 1157
Bsh1236I CGCG 4 cut(s) 324, 480, 525, 623
Bsh1285I CGRYCG 2 cut(s) 198, 322
BshFI GGCC 4 cut(s) 197, 321, 508, 834
BsiEI CGRYCG 2 cut(s) 198, 322
BsiSI CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
BslI CCNNNNNNNGG 6 cut(s) 417, 441, 830, 841, 1077, 1096
BsmAI GTCTC 2 cut(s) 6, 399
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 4 cut(s) 197, 321, 508, 834
Bso31I GGTCTC 1 cut(s) 6
Bsp1286I GDGCHC 2 cut(s) 735, 748
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
BspACI CCGC 5 cut(s) 322, 368, 505, 525, 869
BspANI GGCC 4 cut(s) 197, 321, 508, 834
BspCNI CTCAG 1 cut(s) 1104
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 4 cut(s) 324, 480, 525, 623
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 7 cut(s) 178, 192, 202, 223, 230, 747, 947
BspMAI CTGCAG 1 cut(s) 1147
BspMI ACCTGC 2 cut(s) 275, 982
BspPI GGATC 5 cut(s) 171, 184, 223, 236, 371
BspTNI GGTCTC 1 cut(s) 6
BsrFI RCCGGY 2 cut(s) 193, 966
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 5 cut(s) 509, 740, 815, 947, 1184
BssAI RCCGGY 2 cut(s) 193, 966
BssECI CCNNGG 2 cut(s) 172, 949
BssHII GCGCGC 1 cut(s) 621
BssMI GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 1 cut(s) 949
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 226, 888, 1191
Bst4CI ACNGT 2 cut(s) 359, 1230
Bst6I CTCTTC 3 cut(s) 59, 869, 1010
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 4 cut(s) 195, 558, 623, 1187
BstDEI CTNAG 3 cut(s) 351, 698, 1112
BstF5I GGATG 1 cut(s) 1135
BstFNI CGCG 4 cut(s) 324, 480, 525, 623
BstHHI GCGC 2 cut(s) 623, 625
BstKTI GATC 7 cut(s) 179, 231, 279, 364, 379, 523, 720
BstMAI GTCTC 2 cut(s) 6, 399
BstMBI GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
BstMCI CGRYCG 2 cut(s) 198, 322
BstMWI GCNNNNNNNGC 2 cut(s) 294, 303
BstNI CCWGG 3 cut(s) 226, 888, 1191
BstSCI CCNGG 5 cut(s) 172, 197, 224, 886, 1189
BstSFI CTRYAG 1 cut(s) 1143
BstSLI GKGCMC 1 cut(s) 735
BstUI CGCG 4 cut(s) 324, 480, 525, 623
BstV1I GCAGC 1 cut(s) 1157
BstX2I RGATCY 3 cut(s) 176, 228, 276
BstYI RGATCY 3 cut(s) 176, 228, 276
BstZI CGGCCG 2 cut(s) 195, 319
BsuRI GGCC 4 cut(s) 197, 321, 508, 834
BtsCI GGATG 1 cut(s) 1135
BtsIMutI CAGTG 3 cut(s) 355, 733, 1177
BveI ACCTGC 2 cut(s) 275, 982
Cac8I GCNNGC 4 cut(s) 195, 558, 623, 1187
CciI TCATGA 1 cut(s) 706
CfoI GCGC 2 cut(s) 623, 625
Cfr10I RCCGGY 2 cut(s) 193, 966
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 4 cut(s) 256, 400, 818, 909
CviAII CATG 3 cut(s) 684, 707, 856
CviQI GTAC 4 cut(s) 256, 400, 818, 909
DdeI CTNAG 3 cut(s) 351, 698, 1112
DpnI GATC 7 cut(s) 178, 230, 278, 363, 378, 522, 719
DpnII GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
EaeI YGGCCR 3 cut(s) 195, 319, 506
EagI CGGCCG 2 cut(s) 195, 319
Eam1104I CTCTTC 3 cut(s) 59, 869, 1010
EarI CTCTTC 3 cut(s) 59, 869, 1010
EclXI CGGCCG 2 cut(s) 195, 319
Eco130I CCWWGG 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 201
Eco52I CGGCCG 2 cut(s) 195, 319
Eco57I CTGAAG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 224, 886, 1189
EcoT14I CCWWGG 1 cut(s) 949
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 949
FaeI CATG 3 cut(s) 687, 710, 859
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 3 cut(s) 683, 706, 855
FauI CCCGC 2 cut(s) 375, 518
Fnu4HI GCNGC 3 cut(s) 322, 506, 1146
FokI GGATG 1 cut(s) 1122
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 3 cut(s) 322, 506, 1146
FspBI CTAG 2 cut(s) 384, 921
GlaI GCGC 2 cut(s) 622, 624
GluI GCNGC 3 cut(s) 322, 506, 1146
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 4 cut(s) 197, 321, 508, 834
HapII CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
HhaI GCGC 2 cut(s) 623, 625
Hin1II CATG 3 cut(s) 687, 710, 859
Hin6I GCGC 2 cut(s) 621, 623
HinP1I GCGC 2 cut(s) 621, 623
HincII GTYRAC 2 cut(s) 667, 679
HindII GTYRAC 2 cut(s) 667, 679
HinfI GANTC 6 cut(s) 431, 629, 692, 808, 1044, 1051
HpaII CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
HphI GGTGA 3 cut(s) 440, 909, 950
Hpy166II GTNNAC 3 cut(s) 531, 667, 679
Hpy188I TCNGA 6 cut(s) 116, 181, 217, 570, 717, 1124
Hpy188III TCNNGA 6 cut(s) 9, 163, 392, 707, 824, 1048
Hpy8I GTNNAC 3 cut(s) 531, 667, 679
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 926
HpyCH4III ACNGT 2 cut(s) 359, 1230
HpyCH4V TGCA 6 cut(s) 270, 297, 752, 893, 1145, 1177
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 303
HpyF3I CTNAG 3 cut(s) 351, 698, 1112
Hsp92II CATG 3 cut(s) 687, 710, 859
HspAI GCGC 2 cut(s) 621, 623
Kpn2I TCCGGA 1 cut(s) 162
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
LmnI GCTCC 4 cut(s) 155, 190, 221, 751
Lsp1109I GCAGC 1 cut(s) 1157
LweI GCATC 2 cut(s) 14, 1120
MaeI CTAG 2 cut(s) 384, 921
MaeIII GTNAC 3 cut(s) 550, 938, 962
MalI GATC 7 cut(s) 178, 230, 278, 363, 378, 522, 719
MboI GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
MflI RGATCY 3 cut(s) 176, 228, 276
MhlI GDGCHC 2 cut(s) 735, 748
MluCI AATT 5 cut(s) 158, 292, 607, 899, 1244
MluI ACGCGT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 2 cut(s) 204, 339
MroI TCCGGA 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 1 cut(s) 1232
MslI CAYNNNNRTG 2 cut(s) 860, 1113
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
MspR9I CCNGG 5 cut(s) 174, 199, 226, 888, 1191
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 3 cut(s) 226, 888, 1191
MvnI CGCG 4 cut(s) 324, 480, 525, 623
MwoI GCNNNNNNNGC 2 cut(s) 294, 303
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 2 cut(s) 174, 199
NdeII GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 687, 710, 859
NlaIV GGNNCC 7 cut(s) 178, 192, 202, 223, 230, 747, 947
NmuCI GTSAC 1 cut(s) 938
OliI CACNNNNGTG 1 cut(s) 1113
PagI TCATGA 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 275
PauI GCGCGC 1 cut(s) 621
PctI GAATGC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 5 cut(s) 431, 629, 692, 808, 1051
PflMI CCANNNNNTGG 1 cut(s) 1096
PkrI GCNGC 3 cut(s) 323, 507, 1147
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 224, 886, 1189
PspGI CCWGG 3 cut(s) 224, 886, 1189
PspN4I GGNNCC 7 cut(s) 178, 192, 202, 223, 230, 747, 947
PspPI GGNCC 1 cut(s) 201
PspPPI RGGWCCY 1 cut(s) 201
PstI CTGCAG 1 cut(s) 1147
PsuI RGATCY 3 cut(s) 176, 228, 276
PteI GCGCGC 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 1148
RsaI GTAC 4 cut(s) 257, 401, 819, 910
RsaNI GTAC 4 cut(s) 256, 400, 818, 909
RseI CAYNNNNRTG 2 cut(s) 860, 1113
SaqAI TTAA 1 cut(s) 1232
SatI GCNGC 3 cut(s) 322, 506, 1146
Sau3AI GATC 7 cut(s) 176, 228, 276, 361, 376, 520, 717
Sau96I GGNCC 1 cut(s) 201
ScaI AGTACT 1 cut(s) 819
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 5 cut(s) 174, 199, 226, 888, 1191
SduI GDGCHC 2 cut(s) 735, 748
SfaNI GCATC 2 cut(s) 14, 1120
SfcI CTRYAG 1 cut(s) 1143
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 860, 1113
SmlI CTYRAG 2 cut(s) 392, 1073
SmoI CTYRAG 2 cut(s) 392, 1073
Sse9I AATT 5 cut(s) 158, 292, 607, 899, 1244
SsiI CCGC 5 cut(s) 322, 368, 505, 525, 869
SspMI CTAG 2 cut(s) 384, 921
StyD4I CCNGG 5 cut(s) 172, 197, 224, 886, 1189
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 2 cut(s) 359, 1230
TaqI TCGA 5 cut(s) 8, 156, 375, 485, 837
TasI AATT 5 cut(s) 158, 292, 607, 899, 1244
TatI WGTACW 2 cut(s) 399, 817
TauI GCSGC 2 cut(s) 324, 508
TfiI GAWTC 5 cut(s) 431, 629, 692, 808, 1051
Tru1I TTAA 1 cut(s) 1232
Tru9I TTAA 1 cut(s) 1232
TscAI CASTG 3 cut(s) 362, 740, 1184
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 1 cut(s) 1145
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 5 cut(s) 73, 695, 782, 863, 1210
TspGWI ACGGA 2 cut(s) 118, 203
TspRI CASTG 3 cut(s) 362, 740, 1184
Van91I CCANNNNNTGG 1 cut(s) 1096
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 3 cut(s) 158, 899, 1244
XspI CTAG 2 cut(s) 384, 921
ZrmI AGTACT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.