Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000745.1

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Reverse (-)

139841 .. 140614

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000745.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgatggagccggccgggtcctgcgactactctgatggagcctggatcctcgacccgaatgcgtctctggggatctcccgccgttcgatcccgctagggtttattggtgattccttgaatcggaatatgtttgttgcgcttttctgttcgctgaaacgcgtgtcgagtgaagcaaagaagtggcggccagttggtgctgatcgcgtgttcacatttcttcagtacaatcttgcgtatcatcggacaaatcttttggctcgttatggtaggtggtcggccaattctaatggtggtgtgctcgaatctcttggatataaagagggttatagagttgatgttgacattccggtagacacatgggcagaatctctaagcgttcatgacattctgatattcaacacagggcactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

137

Amino Acids

15.39

Weight (kDa)

6.82

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	2 cut(s)	159, 204
AciI	CCGC	3 cut(s)	79, 92, 184
AclWI	GGATC	4 cut(s)	40, 53, 80, 82
AcoI	YGGCCR	3 cut(s)	12, 185, 276
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	118, 397
AjnI	CCWGG	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	4 cut(s)	40, 53, 80, 82
AoxI	GGCC	3 cut(s)	12, 185, 276
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	300
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	66
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	16, 43
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	4 cut(s)	9, 19, 40, 47
BmrFI	CCNGG	2 cut(s)	16, 43
BpuMI	CCSGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	188, 413
BseBI	CCWGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	188, 413
BseSI	GKGCMC	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	12
Bsh1236I	CGCG	2 cut(s)	159, 204
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	14, 187, 278
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	11, 15, 347
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	14, 187, 278
Bsp1286I	GDGCHC	2 cut(s)	300, 408
Bsp143I	GATC	4 cut(s)	45, 72, 87, 199
BspACI	CCGC	3 cut(s)	79, 92, 184
BspANI	GGCC	3 cut(s)	14, 187, 278
BspFNI	CGCG	2 cut(s)	159, 204
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	4 cut(s)	9, 19, 40, 47
BspPI	GGATC	4 cut(s)	40, 53, 80, 82
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	188, 413
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	4 cut(s)	45, 72, 87, 199
Bst2UI	CCWGG	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	371
BstFNI	CGCG	2 cut(s)	159, 204
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	48, 75, 90, 202
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	4 cut(s)	45, 72, 87, 199
BstMCI	CGRYCG	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	14, 41
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	2 cut(s)	159, 204
BstX2I	RGATCY	2 cut(s)	45, 72
BstYI	RGATCY	2 cut(s)	45, 72
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	14, 187, 278
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	357, 380
CviJI	RGCY	6 cut(s)	10, 14, 41, 187, 257, 278
CviKI_1	RGCY	6 cut(s)	10, 14, 41, 187, 257, 278
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	4 cut(s)	47, 74, 89, 201
DpnII	GATC	4 cut(s)	45, 72, 87, 199
EaeI	YGGCCR	3 cut(s)	12, 185, 276
EagI	CGGCCG	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	18
Eco52I	CGGCCG	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	2 cut(s)	360, 383
FaiI	YATR	6 cut(s)	128, 264, 315, 327, 358, 381
FatI	CATG	2 cut(s)	356, 379
FauI	CCCGC	2 cut(s)	86, 99
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	14, 187, 278
HapII	CCGG	3 cut(s)	11, 15, 347
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	360, 383
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	4 cut(s)	110, 118, 302, 365
HpaII	CCGG	3 cut(s)	11, 15, 347
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	210, 340, 352
Hpy188I	TCNGA	4 cut(s)	34, 123, 243, 390
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	3 cut(s)	210, 340, 352
HpyF3I	CTNAG	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	360, 383
HspAI	GCGC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	45, 72, 87, 199
LmnI	GCTCC	2 cut(s)	7, 38
MaeI	CTAG	1 cut(s)	95
MalI	GATC	4 cut(s)	47, 74, 89, 201
MboI	GATC	4 cut(s)	45, 72, 87, 199
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	2 cut(s)	45, 72
MhlI	GDGCHC	2 cut(s)	300, 408
MluCI	AATT	1 cut(s)	280
MluI	ACGCGT	1 cut(s)	157
MnlI	CCTC	2 cut(s)	59, 313
MroNI	GCCGGC	1 cut(s)	10
MspI	CCGG	3 cut(s)	11, 15, 347
MspR9I	CCNGG	2 cut(s)	16, 43
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	159, 204
NaeI	GCCGGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	4 cut(s)	45, 72, 87, 199
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	360, 383
NlaIV	GGNNCC	4 cut(s)	9, 19, 40, 47
PagI	TCATGA	1 cut(s)	379
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	110, 118, 302, 365
PkrI	GCNGC	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	9, 19, 40, 47
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	45, 72
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	4 cut(s)	45, 72, 87, 199
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	16, 43
SduI	GDGCHC	2 cut(s)	300, 408
SetI	ASST	1 cut(s)	272
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	3 cut(s)	79, 92, 184
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	14, 41
TaqI	TCGA	4 cut(s)	51, 86, 164, 300
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	4 cut(s)	110, 118, 302, 365
TscAI	CASTG	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.