Rmu_sc0004368.1_g000017

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004368.1
Physical Location & Seq
Forward (+)
82467 .. 84949
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004368.1_g000017.1.cds

Sequence Viewer

Length: 1260 bp
atggcatcgagagacatctctcacttgccaaaccagacaaagaaagtccctttcttcttacctctcctctccctcctctgcttcatttccatcttcgccgttctctcttacattagaaacacatcctccgttccctcccaacctcacagctccctccaattccggaaaccccccggacccgacccgacggagccgcccgggtcctgcgactactccgatggagcctggatctacgacccgaatgcttctcccaagtacgacaacacctgcaaggagatcttcaagggctggaattgcatttccagcaacaaatccaacggccgcgaactcgtcaagtggcggtggaagcctaagcactgtgatctcccgccgtttaatcccgctaggtttcttcagatgtacagagacaccagcattgggtttattggtgattccttgaatcggaatatgtttgttgcgcttttctgttcgctgaaacgcgtgtcgagtgaagtaaagaagtggcggccagttggtgctgatcgagggttcacatttcttcagtacaatgttacgcttgcgtatcatcggacaaatcttttggctcgttacggtaggtggtcagccaattctaatggtggcgtgctggaatctcttggatataaagagggttatagagttgatgttgacattccggttgacacatgggccgaatctctaaactttcatgacattctgatattcaacacagggcattggtattgggctcctgcaaagtttgaccctatgaagtcgcctttgcttttctttgaaaatggtcagcctgtggttcctccagtacttcctgatgttggcctcgatatggttatgaaacacatggtaatgtttgtggagaagagactgaagcctggtgcaatcaaattctttcgtactcaatcaccaagacattttgaaggaggtgactggaaccaaggtggttcttgtaaccggcaaaaccctttgttgccagagcaggttgaagaactcttctcattgaagaataatggaacaaatgtagaggcacgactcgtgaatcaacacctttacaaggcccttgaggggtcaggtttccatattttggacgtaacccacctgagcgagttcagagcagatgcccatccatctgcagcgggtgggaagaagcacgatgattgtatgcactggtgcttgccaggaataacagatacttggaatgacttgttcatagcacagttaaataatgtcagatttagaacaaaataa

Protein Analysis

419

Amino Acids

47.76

Weight (kDa)

8.93

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 2 cut(s) 275, 982
AccB7I CCANNNNNTGG 1 cut(s) 1096
AccII CGCG 2 cut(s) 324, 480
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 7 cut(s) 194, 322, 340, 368, 381, 505, 1148
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 2 cut(s) 319, 506
AcsI RAATTY 1 cut(s) 899
AcuI CTGAAG 3 cut(s) 377, 524, 902
AfaI GTAC 5 cut(s) 257, 401, 545, 819, 910
AfiI CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1077, 1096
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 7 cut(s) 283, 439, 724, 791, 932, 998, 1015
AjnI CCWGG 3 cut(s) 224, 886, 1189
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw26I GTCTC 3 cut(s) 6, 399, 871
AlwI GGATC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 5 cut(s) 319, 506, 687, 832, 1068
ApeKI GCWGC 1 cut(s) 1145
ApoI RAATTY 1 cut(s) 899
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 4 cut(s) 176, 201, 687, 1069
AsuC2I CCSGG 3 cut(s) 174, 198, 199
AsuHPI GGTGA 3 cut(s) 440, 909, 950
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 2 cut(s) 176, 201
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 1046
BbvI GCAGC 1 cut(s) 1157
BccI CCATC 4 cut(s) 98, 212, 1143, 1147
BceAI ACGGC 3 cut(s) 83, 334, 355
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 3 cut(s) 226, 888, 1191
BcnI CCSGG 3 cut(s) 174, 198, 199
BcoDI GTCTC 3 cut(s) 6, 399, 871
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 1143
BfuAI ACCTGC 2 cut(s) 275, 982
BglII AGATCT 1 cut(s) 276
BisI GCNGC 4 cut(s) 194, 322, 506, 1146
BlsI GCNGC 4 cut(s) 195, 323, 507, 1147
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 6 cut(s) 174, 198, 199, 226, 888, 1191
Bme18I GGWCC 2 cut(s) 176, 201
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 4 cut(s) 176, 201, 687, 1069
BmiI GGNNCC 7 cut(s) 178, 192, 202, 223, 747, 810, 947
BmrFI CCNGG 6 cut(s) 174, 198, 199, 226, 888, 1191
BmsI GCATC 2 cut(s) 14, 1120
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 2 cut(s) 351, 1112
BpuEI CTTGAG 1 cut(s) 1094
BpuMI CCSGG 3 cut(s) 174, 198, 199
BsaBI GATNNNNATC 1 cut(s) 1134
BsaJI CCNNGG 3 cut(s) 172, 197, 949
BsaWI WCCGGW 2 cut(s) 162, 673
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1077, 1096
Bse118I RCCGGY 1 cut(s) 966
Bse1I ACTGG 4 cut(s) 509, 815, 947, 1184
Bse8I GATNNNNATC 1 cut(s) 1134
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 3 cut(s) 226, 888, 1191
BseDI CCNNGG 3 cut(s) 172, 197, 949
BseGI GGATG 2 cut(s) 122, 1135
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1077, 1096
BseMII CTCAG 1 cut(s) 1103
BseNI ACTGG 4 cut(s) 509, 815, 947, 1184
BseRI GAGGAG 2 cut(s) 56, 65
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 1157
Bsh1236I CGCG 2 cut(s) 324, 480
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 5 cut(s) 321, 508, 689, 834, 1070
BsiEI CGRYCG 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 5 cut(s) 163, 174, 198, 674, 967
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1077, 1096
BsmAI GTCTC 3 cut(s) 6, 399, 871
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 321, 508, 689, 834, 1070
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 748
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 4 cut(s) 228, 276, 361, 520
BspACI CCGC 7 cut(s) 194, 322, 340, 368, 381, 505, 1148
BspANI GGCC 5 cut(s) 321, 508, 689, 834, 1070
BspCNI CTCAG 1 cut(s) 1104
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 2 cut(s) 324, 480
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 7 cut(s) 178, 192, 202, 223, 747, 810, 947
BspMAI CTGCAG 1 cut(s) 1147
BspMI ACCTGC 2 cut(s) 275, 982
BspPI GGATC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 966
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 4 cut(s) 509, 815, 947, 1184
BssAI RCCGGY 1 cut(s) 966
BssECI CCNNGG 3 cut(s) 172, 197, 949
BssMI GATC 4 cut(s) 228, 276, 361, 520
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 1 cut(s) 949
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 226, 888, 1191
Bst4CI ACNGT 3 cut(s) 359, 593, 1230
Bst6I CTCTTC 2 cut(s) 869, 1010
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 558, 623, 1187
BstDEI CTNAG 2 cut(s) 351, 1112
BstENI CCTNNNNNAGG 1 cut(s) 1064
BstF5I GGATG 2 cut(s) 122, 1135
BstFNI CGCG 2 cut(s) 324, 480
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 231, 279, 364, 523
BstMAI GTCTC 3 cut(s) 6, 399, 871
BstMBI GATC 4 cut(s) 228, 276, 361, 520
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 3 cut(s) 294, 303, 346
BstNI CCWGG 3 cut(s) 226, 888, 1191
BstSCI CCNGG 6 cut(s) 172, 196, 197, 224, 886, 1189
BstSFI CTRYAG 1 cut(s) 1143
BstUI CGCG 2 cut(s) 324, 480
BstV1I GCAGC 1 cut(s) 1157
BstX2I RGATCY 2 cut(s) 228, 276
BstYI RGATCY 2 cut(s) 228, 276
BstZI CGGCCG 1 cut(s) 319
BsuRI GGCC 5 cut(s) 321, 508, 689, 834, 1070
BtsCI GGATG 2 cut(s) 122, 1135
BtsIMutI CAGTG 2 cut(s) 355, 1177
BveI ACCTGC 2 cut(s) 275, 982
Cac8I GCNNGC 3 cut(s) 558, 623, 1187
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 966
Cfr13I GGNCC 4 cut(s) 176, 201, 687, 1069
Cfr9I CCCGGG 1 cut(s) 197
Csp6I GTAC 5 cut(s) 256, 400, 544, 818, 909
CviAII CATG 3 cut(s) 684, 707, 856
CviQI GTAC 5 cut(s) 256, 400, 544, 818, 909
DdeI CTNAG 2 cut(s) 351, 1112
DpnI GATC 4 cut(s) 230, 278, 363, 522
DpnII GATC 4 cut(s) 228, 276, 361, 520
EaeI YGGCCR 2 cut(s) 319, 506
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 869, 1010
EarI CTCTTC 2 cut(s) 869, 1010
EclXI CGGCCG 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 176, 201
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 377, 524, 902
Eco88I CYCGRG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 1064
EcoO109I RGGNCCY 2 cut(s) 201, 1069
EcoRII CCWGG 3 cut(s) 224, 886, 1189
EcoT14I CCWWGG 1 cut(s) 949
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 949
FaeI CATG 3 cut(s) 687, 710, 859
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 32
FatI CATG 3 cut(s) 683, 706, 855
FauI CCCGC 3 cut(s) 375, 388, 1141
Fnu4HI GCNGC 4 cut(s) 194, 322, 506, 1146
FokI GGATG 2 cut(s) 109, 1122
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 194, 322, 506, 1146
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 459
GluI GCNGC 4 cut(s) 194, 322, 506, 1146
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 5 cut(s) 321, 508, 689, 834, 1070
HapII CCGG 5 cut(s) 163, 174, 198, 674, 967
HhaI GCGC 1 cut(s) 460
Hin1II CATG 3 cut(s) 687, 710, 859
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 2 cut(s) 667, 679
HindII GTYRAC 2 cut(s) 667, 679
HinfI GANTC 6 cut(s) 431, 439, 629, 692, 1044, 1051
HpaII CCGG 5 cut(s) 163, 174, 198, 674, 967
HphI GGTGA 3 cut(s) 440, 909, 950
Hpy166II GTNNAC 3 cut(s) 531, 667, 679
Hpy188I TCNGA 7 cut(s) 217, 396, 444, 570, 717, 1124, 1244
Hpy188III TCNNGA 5 cut(s) 9, 163, 707, 824, 1048
Hpy8I GTNNAC 3 cut(s) 531, 667, 679
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 926
HpyCH4III ACNGT 3 cut(s) 359, 593, 1230
HpyCH4IV ACGT 1 cut(s) 1101
HpyCH4V TGCA 6 cut(s) 270, 297, 752, 893, 1145, 1177
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 303, 346
HpyF3I CTNAG 2 cut(s) 351, 1112
HpySE526I ACGT 1 cut(s) 1101
Hsp92II CATG 3 cut(s) 687, 710, 859
HspAI GCGC 1 cut(s) 458
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 228, 276, 361, 520
LmnI GCTCC 4 cut(s) 155, 190, 221, 751
Lsp1109I GCAGC 1 cut(s) 1157
LweI GCATC 2 cut(s) 14, 1120
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 5 cut(s) 550, 587, 938, 962, 1102
MalI GATC 4 cut(s) 230, 278, 363, 522
MboI GATC 4 cut(s) 228, 276, 361, 520
MflI RGATCY 2 cut(s) 228, 276
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 4 cut(s) 158, 292, 607, 899
MluI ACGCGT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 1 cut(s) 339
MroI TCCGGA 1 cut(s) 162
MseI TTAA 2 cut(s) 375, 1232
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 5 cut(s) 163, 174, 198, 674, 967
MspR9I CCNGG 6 cut(s) 174, 198, 199, 226, 888, 1191
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 3 cut(s) 226, 888, 1191
MvnI CGCG 2 cut(s) 324, 480
MwoI GCNNNNNNNGC 3 cut(s) 294, 303, 346
NciI CCSGG 3 cut(s) 174, 198, 199
NdeII GATC 4 cut(s) 228, 276, 361, 520
NlaIII CATG 3 cut(s) 687, 710, 859
NlaIV GGNNCC 7 cut(s) 178, 192, 202, 223, 747, 810, 947
NmuCI GTSAC 1 cut(s) 938
PagI TCATGA 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 5 cut(s) 431, 439, 629, 692, 1051
PflMI CCANNNNNTGG 1 cut(s) 1096
PkrI GCNGC 4 cut(s) 195, 323, 507, 1147
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 224, 886, 1189
PspGI CCWGG 3 cut(s) 224, 886, 1189
PspN4I GGNNCC 7 cut(s) 178, 192, 202, 223, 747, 810, 947
PspPI GGNCC 4 cut(s) 176, 201, 687, 1069
PspPPI RGGWCCY 1 cut(s) 201
PstI CTGCAG 1 cut(s) 1147
PsuI RGATCY 2 cut(s) 228, 276
RsaI GTAC 5 cut(s) 257, 401, 545, 819, 910
RsaNI GTAC 5 cut(s) 256, 400, 544, 818, 909
RseI CAYNNNNRTG 1 cut(s) 860
SaqAI TTAA 2 cut(s) 375, 1232
SatI GCNGC 4 cut(s) 194, 322, 506, 1146
Sau3AI GATC 4 cut(s) 228, 276, 361, 520
Sau96I GGNCC 4 cut(s) 176, 201, 687, 1069
ScaI AGTACT 1 cut(s) 819
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 6 cut(s) 174, 198, 199, 226, 888, 1191
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 2 cut(s) 14, 1120
SfcI CTRYAG 1 cut(s) 1143
SinI GGWCC 2 cut(s) 176, 201
SmaI CCCGGG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 1073
SmoI CTYRAG 1 cut(s) 1073
Sse9I AATT 4 cut(s) 158, 292, 607, 899
SsiI CCGC 7 cut(s) 194, 322, 340, 368, 381, 505, 1148
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 6 cut(s) 172, 196, 197, 224, 886, 1189
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 3 cut(s) 359, 593, 1230
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 4 cut(s) 8, 485, 523, 837
TasI AATT 4 cut(s) 158, 292, 607, 899
TatI WGTACW 3 cut(s) 399, 543, 817
TauI GCSGC 3 cut(s) 196, 324, 508
TfiI GAWTC 5 cut(s) 431, 439, 629, 692, 1051
Tru1I TTAA 2 cut(s) 375, 1232
Tru9I TTAA 2 cut(s) 375, 1232
TscAI CASTG 2 cut(s) 362, 1184
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 1 cut(s) 1145
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 5 cut(s) 73, 695, 782, 863, 1210
TspGWI ACGGA 2 cut(s) 118, 203
TspMI CCCGGG 1 cut(s) 197
TspRI CASTG 2 cut(s) 362, 1184
Van91I CCANNNNNTGG 1 cut(s) 1096
VpaK11BI GGWCC 2 cut(s) 176, 201
XagI CCTNNNNNAGG 1 cut(s) 1064
XapI RAATTY 1 cut(s) 899
XmaI CCCGGG 1 cut(s) 197
XspI CTAG 1 cut(s) 384
ZrmI AGTACT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.