Rh6BG033700

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
5073226 .. 5075664
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG033700.1

Sequence Viewer

Length: 1260 bp
ATGGCATCGAGAGACCTCTCTCACTTGCCAAACCAGACAAAGAAAGTCCCTTTCTTCTTACCTCTCCTCTCCCTCCTCTGCTTCATTTCCATCTTCGCCGTTCTCTCTTACATTAGAAACACATCCTCCGTTCCCTCCCAACCTCACAGCTCCCTCCAATTCCGGAAACCCCCCGGACCCGACCCGACAGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAGCCTGGATCTACGACCCGAATGCGTCTCCCAAGTACGACAACTCCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAGCAAATCCAACGGCCGCGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCCGCTAGGTTTCTTCAGATGTACAGAGACACCAGCATTGGGTTTATTGGCGATTCCTTGAACCGGAATATGTTTGTTTCGCTGTTCTGTTCGCTGAAACGCGTGTCGAGTGAAGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGAGGGTTCACATTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGCTACGGTAGGTGGTCAGCCAATTCTAATGGTGGCGTGCTGGAATCTCTTGGATATAAAGAGGGTTTTAGAGTTGATGTTGACATTCCGGTTGACACATGGGTAGAATCTCTAAGCTTTCATGACATTCTAATATTCAACACAGGACACTGGTATTGGGCTCCTGCAAAGTTCGACCCTAAGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGATGTTGGCCTCGATATGGTTATGAAACACATGGTAATGTTTGTGGAGAAGAGACTGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAATCCTTTGTTGCCAGAGCAGGTTGAGGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGTTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACCGATACTTGGAATGACTTGTTCATAGCACAGTTAAATAATGTCATATTTAGAACAAAATAA

Protein Analysis

419

Amino Acids

47.66

Weight (kDa)

8.83

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 68 - 121 4e-14 PMR5 N terminal Domain
PC-Esterase PF13839 122 - 409 4.9e-68 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 982
AccB7I CCANNNNNTGG 1 cut(s) 1096
AccII CGCG 2 cut(s) 324, 480
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 4 cut(s) 322, 368, 381, 505
AclWI GGATC 2 cut(s) 236, 371
AcoI YGGCCR 3 cut(s) 195, 319, 506
AcsI RAATTY 1 cut(s) 899
AcuI CTGAAG 3 cut(s) 377, 524, 902
AfaI GTAC 5 cut(s) 257, 401, 545, 819, 910
AfiI CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1096, 1206
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 6 cut(s) 283, 439, 724, 791, 932, 1015
AjnI CCWGG 3 cut(s) 224, 886, 1189
AleI CACNNNNGTG 1 cut(s) 1113
AluBI AGCT 3 cut(s) 150, 702, 1148
AluI AGCT 3 cut(s) 150, 702, 1148
Alw26I GTCTC 4 cut(s) 6, 252, 399, 871
AlwI GGATC 2 cut(s) 236, 371
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 5 cut(s) 195, 319, 506, 832, 1068
ApeKI GCWGC 2 cut(s) 306, 1145
ApoI RAATTY 1 cut(s) 899
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AspS9I GGNCC 3 cut(s) 176, 201, 1069
AsuC2I CCSGG 2 cut(s) 174, 199
AsuHPI GGTGA 2 cut(s) 909, 950
AvaII GGWCC 2 cut(s) 176, 201
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 1046
BbvI GCAGC 2 cut(s) 318, 1157
BccI CCATC 4 cut(s) 98, 212, 1143, 1147
BceAI ACGGC 3 cut(s) 83, 334, 355
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 3 cut(s) 226, 888, 1191
BcnI CCSGG 2 cut(s) 174, 199
BcoDI GTCTC 4 cut(s) 6, 252, 399, 871
BfaI CTAG 2 cut(s) 384, 921
BfmI CTRYAG 1 cut(s) 1143
BfuAI ACCTGC 1 cut(s) 982
BglII AGATCT 1 cut(s) 276
BisI GCNGC 4 cut(s) 307, 322, 506, 1146
BlsI GCNGC 4 cut(s) 308, 323, 507, 1147
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 5 cut(s) 174, 199, 226, 888, 1191
Bme18I GGWCC 2 cut(s) 176, 201
BmgT120I GGNCC 3 cut(s) 176, 201, 1069
BmiI GGNNCC 6 cut(s) 178, 202, 223, 747, 810, 947
BmrFI CCNGG 5 cut(s) 174, 199, 226, 888, 1191
BmsI GCATC 2 cut(s) 14, 1120
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 1094
BpuMI CCSGG 2 cut(s) 174, 199
BsaBI GATNNNNATC 1 cut(s) 1134
BsaI GGTCTC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 172, 949
BsaWI WCCGGW 3 cut(s) 162, 441, 673
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 248, 278
Bsc4I CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1096, 1206
Bse118I RCCGGY 2 cut(s) 193, 966
Bse1I ACTGG 5 cut(s) 509, 740, 815, 947, 1184
Bse8I GATNNNNATC 1 cut(s) 1134
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 3 cut(s) 226, 888, 1191
BseDI CCNNGG 2 cut(s) 172, 949
BseGI GGATG 2 cut(s) 122, 1135
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1096, 1206
BseMII CTCAG 1 cut(s) 1103
BseNI ACTGG 5 cut(s) 509, 740, 815, 947, 1184
BseRI GAGGAG 2 cut(s) 56, 65
BseX3I CGGCCG 2 cut(s) 195, 319
BseXI GCAGC 2 cut(s) 318, 1157
Bsh1236I CGCG 2 cut(s) 324, 480
Bsh1285I CGRYCG 2 cut(s) 198, 322
BshFI GGCC 5 cut(s) 197, 321, 508, 834, 1070
BsiEI CGRYCG 2 cut(s) 198, 322
BsiSI CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 7 cut(s) 417, 441, 830, 841, 1066, 1096, 1206
BsmAI GTCTC 4 cut(s) 6, 252, 399, 871
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 197, 321, 508, 834, 1070
Bso31I GGTCTC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 748
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 5 cut(s) 228, 276, 361, 376, 520
BspACI CCGC 4 cut(s) 322, 368, 381, 505
BspANI GGCC 5 cut(s) 197, 321, 508, 834, 1070
BspCNI CTCAG 1 cut(s) 1104
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 2 cut(s) 324, 480
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 6 cut(s) 178, 202, 223, 747, 810, 947
BspMAI CTGCAG 1 cut(s) 1147
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 2 cut(s) 236, 371
BspTNI GGTCTC 1 cut(s) 6
BsrFI RCCGGY 2 cut(s) 193, 966
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 5 cut(s) 509, 740, 815, 947, 1184
BssAI RCCGGY 2 cut(s) 193, 966
BssECI CCNNGG 2 cut(s) 172, 949
BssMI GATC 5 cut(s) 228, 276, 361, 376, 520
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 1 cut(s) 949
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 226, 888, 1191
Bst4CI ACNGT 3 cut(s) 359, 593, 1230
Bst6I CTCTTC 2 cut(s) 869, 1010
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 5 cut(s) 195, 558, 586, 623, 1187
BstDEI CTNAG 4 cut(s) 351, 698, 765, 1112
BstENI CCTNNNNNAGG 1 cut(s) 1064
BstF5I GGATG 2 cut(s) 122, 1135
BstFNI CGCG 2 cut(s) 324, 480
BstKTI GATC 5 cut(s) 231, 279, 364, 379, 523
BstMAI GTCTC 4 cut(s) 6, 252, 399, 871
BstMBI GATC 5 cut(s) 228, 276, 361, 376, 520
BstMCI CGRYCG 2 cut(s) 198, 322
BstMWI GCNNNNNNNGC 2 cut(s) 294, 303
BstNI CCWGG 3 cut(s) 226, 888, 1191
BstSCI CCNGG 5 cut(s) 172, 197, 224, 886, 1189
BstSFI CTRYAG 1 cut(s) 1143
BstUI CGCG 2 cut(s) 324, 480
BstV1I GCAGC 2 cut(s) 318, 1157
BstX2I RGATCY 2 cut(s) 228, 276
BstYI RGATCY 2 cut(s) 228, 276
BstZI CGGCCG 2 cut(s) 195, 319
BsuRI GGCC 5 cut(s) 197, 321, 508, 834, 1070
BtsCI GGATG 2 cut(s) 122, 1135
BtsIMutI CAGTG 3 cut(s) 355, 733, 1177
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 5 cut(s) 195, 558, 586, 623, 1187
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 2 cut(s) 193, 966
Cfr13I GGNCC 3 cut(s) 176, 201, 1069
CseI GACGC 1 cut(s) 234
Csp6I GTAC 5 cut(s) 256, 400, 544, 818, 909
CviAII CATG 3 cut(s) 684, 707, 856
CviQI GTAC 5 cut(s) 256, 400, 544, 818, 909
DdeI CTNAG 4 cut(s) 351, 698, 765, 1112
DpnI GATC 5 cut(s) 230, 278, 363, 378, 522
DpnII GATC 5 cut(s) 228, 276, 361, 376, 520
EaeI YGGCCR 3 cut(s) 195, 319, 506
EagI CGGCCG 2 cut(s) 195, 319
Eam1104I CTCTTC 2 cut(s) 869, 1010
EarI CTCTTC 2 cut(s) 869, 1010
EclXI CGGCCG 2 cut(s) 195, 319
Eco130I CCWWGG 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 176, 201
Eco52I CGGCCG 2 cut(s) 195, 319
Eco57I CTGAAG 3 cut(s) 377, 524, 902
EcoNI CCTNNNNNAGG 1 cut(s) 1064
EcoO109I RGGNCCY 2 cut(s) 201, 1069
EcoRII CCWGG 3 cut(s) 224, 886, 1189
EcoT14I CCWWGG 1 cut(s) 949
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 949
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 687, 710, 859
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 32
FatI CATG 3 cut(s) 683, 706, 855
FauI CCCGC 2 cut(s) 375, 388
Fnu4HI GCNGC 4 cut(s) 307, 322, 506, 1146
FokI GGATG 2 cut(s) 109, 1122
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 307, 322, 506, 1146
FspBI CTAG 2 cut(s) 384, 921
GluI GCNGC 4 cut(s) 307, 322, 506, 1146
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 5 cut(s) 197, 321, 508, 834, 1070
HapII CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
HgaI GACGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 687, 710, 859
HincII GTYRAC 2 cut(s) 667, 679
HindII GTYRAC 2 cut(s) 667, 679
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 5 cut(s) 431, 629, 692, 1044, 1051
HpaII CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
HphI GGTGA 2 cut(s) 909, 950
Hpy166II GTNNAC 3 cut(s) 531, 667, 679
Hpy188I TCNGA 4 cut(s) 217, 396, 570, 1124
Hpy188III TCNNGA 5 cut(s) 9, 163, 707, 824, 1048
Hpy8I GTNNAC 3 cut(s) 531, 667, 679
HpyAV CCTTC 1 cut(s) 926
HpyCH4III ACNGT 3 cut(s) 359, 593, 1230
HpyCH4V TGCA 6 cut(s) 270, 297, 752, 893, 1145, 1177
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 303
HpyF3I CTNAG 4 cut(s) 351, 698, 765, 1112
Hsp92II CATG 3 cut(s) 687, 710, 859
Kpn2I TCCGGA 1 cut(s) 162
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 5 cut(s) 228, 276, 361, 376, 520
LmnI GCTCC 3 cut(s) 155, 221, 751
Lsp1109I GCAGC 2 cut(s) 318, 1157
LweI GCATC 2 cut(s) 14, 1120
MaeI CTAG 2 cut(s) 384, 921
MaeIII GTNAC 3 cut(s) 550, 938, 962
MalI GATC 5 cut(s) 230, 278, 363, 378, 522
MboI GATC 5 cut(s) 228, 276, 361, 376, 520
MboII GAAGA 9 cut(s) 46, 85, 271, 383, 530, 886, 997, 1027, 1168
MflI RGATCY 2 cut(s) 228, 276
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 4 cut(s) 158, 292, 607, 899
MluI ACGCGT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 1 cut(s) 339
MroI TCCGGA 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 1 cut(s) 1232
MslI CAYNNNNRTG 2 cut(s) 860, 1113
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 7 cut(s) 163, 174, 194, 198, 442, 674, 967
MspR9I CCNGG 5 cut(s) 174, 199, 226, 888, 1191
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 3 cut(s) 226, 888, 1191
MvnI CGCG 2 cut(s) 324, 480
MwoI GCNNNNNNNGC 2 cut(s) 294, 303
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 2 cut(s) 174, 199
NdeII GATC 5 cut(s) 228, 276, 361, 376, 520
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 687, 710, 859
NlaIV GGNNCC 6 cut(s) 178, 202, 223, 747, 810, 947
NmuCI GTSAC 1 cut(s) 938
OliI CACNNNNGTG 1 cut(s) 1113
PagI TCATGA 1 cut(s) 706
PctI GAATGC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 4 cut(s) 431, 629, 692, 1051
PflMI CCANNNNNTGG 1 cut(s) 1096
PkrI GCNGC 4 cut(s) 308, 323, 507, 1147
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 224, 886, 1189
PspGI CCWGG 3 cut(s) 224, 886, 1189
PspN4I GGNNCC 6 cut(s) 178, 202, 223, 747, 810, 947
PspPI GGNCC 3 cut(s) 176, 201, 1069
PspPPI RGGWCCY 1 cut(s) 201
PstI CTGCAG 1 cut(s) 1147
PsuI RGATCY 2 cut(s) 228, 276
PvuII CAGCTG 1 cut(s) 1148
RsaI GTAC 5 cut(s) 257, 401, 545, 819, 910
RsaNI GTAC 5 cut(s) 256, 400, 544, 818, 909
RseI CAYNNNNRTG 2 cut(s) 860, 1113
SaqAI TTAA 1 cut(s) 1232
SatI GCNGC 4 cut(s) 307, 322, 506, 1146
Sau3AI GATC 5 cut(s) 228, 276, 361, 376, 520
Sau96I GGNCC 3 cut(s) 176, 201, 1069
ScaI AGTACT 1 cut(s) 819
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 5 cut(s) 174, 199, 226, 888, 1191
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 2 cut(s) 14, 1120
SfcI CTRYAG 1 cut(s) 1143
SinI GGWCC 2 cut(s) 176, 201
SmiMI CAYNNNNRTG 2 cut(s) 860, 1113
SmlI CTYRAG 1 cut(s) 1073
SmoI CTYRAG 1 cut(s) 1073
Sse9I AATT 4 cut(s) 158, 292, 607, 899
SsiI CCGC 4 cut(s) 322, 368, 381, 505
SspI AATATT 1 cut(s) 720
SspMI CTAG 2 cut(s) 384, 921
StyD4I CCNGG 5 cut(s) 172, 197, 224, 886, 1189
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 3 cut(s) 359, 593, 1230
TaqI TCGA 6 cut(s) 8, 375, 485, 523, 759, 837
TasI AATT 4 cut(s) 158, 292, 607, 899
TatI WGTACW 3 cut(s) 399, 543, 817
TauI GCSGC 2 cut(s) 324, 508
TfiI GAWTC 4 cut(s) 431, 629, 692, 1051
Tru1I TTAA 1 cut(s) 1232
Tru9I TTAA 1 cut(s) 1232
TscAI CASTG 3 cut(s) 362, 740, 1184
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 2 cut(s) 306, 1145
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 4 cut(s) 73, 695, 863, 1210
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 3 cut(s) 362, 740, 1184
Van91I CCANNNNNTGG 1 cut(s) 1096
VpaK11BI GGWCC 2 cut(s) 176, 201
XagI CCTNNNNNAGG 1 cut(s) 1064
XapI RAATTY 1 cut(s) 899
XspI CTAG 2 cut(s) 384, 921
ZrmI AGTACT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.