Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Forward (+)

5247297 .. 5249719

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG034000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCATCGAGAGACCTCTCTCACTTGCCAAGCCAGACAAAGAAAGTCCCTTTCTTCTTACCTCTCCTCTCCCTCCTCTGCTTCATTTCCATCTTCGCCGTTCTCTCTTACATTAGAAACACATCCTCCGTTCCCTCCCAACCTCACAGCTCCCTCCAATTCCGGAAACCCCCCGGACCCGACCCGACGGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAGCCTGGATCTACGACCCGAATGCGTCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCCGCTAGGTTTCTTCAGATGTACAGAGACACCAGCATTGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCAGCCAATTCTAATGGTGGCGTGCTGGAATCTCTTGGATATAAAGAGGGTTTTAGAGTTGATGTTGACATTCCGGTTGACACATGGGCAGAATCTCTAAGCTTTCATGACATTCTGATATTCAACACAGGACACTGGTATTGGGCTTCTGCAAAGTTCGACCCTAAGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGATGTTGACCTCGATATGGTTATGAAACACATGATAATGTTTGTGGAGAAGAGACTGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACGTAACCCACCTGAGCGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTGTTCATAGCACAGTTAAATAATGTCAGTTTTAGAACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

394

Amino Acids

44.88

Weight (kDa)

8.65

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 121	2.1e-14	PMR5 N terminal Domain
PC-Esterase	PF13839	147 - 384	1.1e-49	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	2 cut(s)	275, 907
AccB7I	CCANNNNNTGG	1 cut(s)	1021
AccII	CGCG	2 cut(s)	324, 450
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	5 cut(s)	322, 368, 381, 430, 450
AclWI	GGATC	2 cut(s)	236, 371
AcoI	YGGCCR	3 cut(s)	195, 319, 431
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	3 cut(s)	377, 449, 827
AfaI	GTAC	5 cut(s)	257, 401, 470, 744, 835
AfiI	CCNNNNNNNGG	4 cut(s)	766, 991, 1002, 1021
AgsI	TTSAA	6 cut(s)	283, 649, 716, 857, 923, 940
AjnI	CCWGG	3 cut(s)	224, 811, 1114
AluBI	AGCT	3 cut(s)	150, 627, 1073
AluI	AGCT	3 cut(s)	150, 627, 1073
Alw26I	GTCTC	4 cut(s)	6, 252, 399, 796
AlwI	GGATC	2 cut(s)	236, 371
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	4 cut(s)	195, 319, 431, 993
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	1 cut(s)	824
ArsI	GACNNNNNNTTYG	2 cut(s)	487, 519
AspS9I	GGNCC	3 cut(s)	176, 201, 994
AsuC2I	CCSGG	2 cut(s)	174, 199
AsuHPI	GGTGA	2 cut(s)	834, 875
AvaII	GGWCC	2 cut(s)	176, 201
BauI	CACGAG	1 cut(s)	971
BbvI	GCAGC	1 cut(s)	1082
BccI	CCATC	4 cut(s)	98, 212, 1068, 1072
BceAI	ACGGC	3 cut(s)	83, 334, 355
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	3 cut(s)	226, 813, 1116
BcnI	CCSGG	2 cut(s)	174, 199
BcoDI	GTCTC	4 cut(s)	6, 252, 399, 796
BfaI	CTAG	2 cut(s)	384, 846
BfmI	CTRYAG	1 cut(s)	1068
BfuAI	ACCTGC	2 cut(s)	275, 907
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	3 cut(s)	322, 431, 1071
BlsI	GCNGC	3 cut(s)	323, 432, 1072
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	5 cut(s)	174, 199, 226, 813, 1116
Bme18I	GGWCC	2 cut(s)	176, 201
BmgT120I	GGNCC	3 cut(s)	176, 201, 994
BmiI	GGNNCC	6 cut(s)	178, 192, 202, 223, 735, 872
BmrFI	CCNGG	5 cut(s)	174, 199, 226, 813, 1116
BmsI	GCATC	2 cut(s)	14, 1045
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	2 cut(s)	351, 1037
BpuEI	CTTGAG	1 cut(s)	1019
BpuMI	CCSGG	2 cut(s)	174, 199
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	172, 874
BsaWI	WCCGGW	2 cut(s)	162, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	766, 991, 1002, 1021
Bse118I	RCCGGY	2 cut(s)	193, 891
Bse1I	ACTGG	5 cut(s)	434, 665, 740, 872, 1109
Bse8I	GATNNNNATC	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	226, 813, 1116
BseDI	CCNNGG	2 cut(s)	172, 874
BseGI	GGATG	2 cut(s)	122, 1060
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	4 cut(s)	766, 991, 1002, 1021
BseMII	CTCAG	1 cut(s)	1028
BseNI	ACTGG	5 cut(s)	434, 665, 740, 872, 1109
BseRI	GAGGAG	2 cut(s)	56, 65
BseX3I	CGGCCG	2 cut(s)	195, 319
BseXI	GCAGC	1 cut(s)	1082
Bsh1236I	CGCG	2 cut(s)	324, 450
Bsh1285I	CGRYCG	2 cut(s)	198, 322
BshFI	GGCC	4 cut(s)	197, 321, 433, 995
BsiEI	CGRYCG	2 cut(s)	198, 322
BsiSI	CCGG	6 cut(s)	163, 174, 194, 198, 599, 892
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	766, 991, 1002, 1021
BsmAI	GTCTC	4 cut(s)	6, 252, 399, 796
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	4 cut(s)	197, 321, 433, 995
Bso31I	GGTCTC	1 cut(s)	6
Bsp13I	TCCGGA	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	5 cut(s)	228, 276, 361, 376, 445
BspACI	CCGC	5 cut(s)	322, 368, 381, 430, 450
BspANI	GGCC	4 cut(s)	197, 321, 433, 995
BspCNI	CTCAG	1 cut(s)	1029
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	324, 450
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	6 cut(s)	178, 192, 202, 223, 735, 872
BspMAI	CTGCAG	1 cut(s)	1072
BspMI	ACCTGC	2 cut(s)	275, 907
BspPI	GGATC	2 cut(s)	236, 371
BspTNI	GGTCTC	1 cut(s)	6
BsrFI	RCCGGY	2 cut(s)	193, 891
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	5 cut(s)	434, 665, 740, 872, 1109
BssAI	RCCGGY	2 cut(s)	193, 891
BssECI	CCNNGG	2 cut(s)	172, 874
BssMI	GATC	5 cut(s)	228, 276, 361, 376, 445
BssSI	CACGAG	1 cut(s)	971
BssT1I	CCWWGG	1 cut(s)	874
Bst2BI	CACGAG	1 cut(s)	971
Bst2UI	CCWGG	3 cut(s)	226, 813, 1116
Bst4CI	ACNGT	3 cut(s)	359, 518, 1155
Bst6I	CTCTTC	2 cut(s)	794, 935
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	195, 483, 548, 1112
BstDEI	CTNAG	4 cut(s)	351, 623, 690, 1037
BstENI	CCTNNNNNAGG	1 cut(s)	989
BstF5I	GGATG	2 cut(s)	122, 1060
BstFNI	CGCG	2 cut(s)	324, 450
BstKTI	GATC	5 cut(s)	231, 279, 364, 379, 448
BstMAI	GTCTC	4 cut(s)	6, 252, 399, 796
BstMBI	GATC	5 cut(s)	228, 276, 361, 376, 445
BstMCI	CGRYCG	2 cut(s)	198, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 303
BstNI	CCWGG	3 cut(s)	226, 813, 1116
BstSCI	CCNGG	5 cut(s)	172, 197, 224, 811, 1114
BstSFI	CTRYAG	1 cut(s)	1068
BstUI	CGCG	2 cut(s)	324, 450
BstV1I	GCAGC	1 cut(s)	1082
BstX2I	RGATCY	2 cut(s)	228, 276
BstYI	RGATCY	2 cut(s)	228, 276
BstZI	CGGCCG	2 cut(s)	195, 319
BsuRI	GGCC	4 cut(s)	197, 321, 433, 995
BtsCI	GGATG	2 cut(s)	122, 1060
BtsIMutI	CAGTG	3 cut(s)	355, 658, 1102
BveI	ACCTGC	2 cut(s)	275, 907
Cac8I	GCNNGC	4 cut(s)	195, 483, 548, 1112
CciI	TCATGA	1 cut(s)	631
Cfr10I	RCCGGY	2 cut(s)	193, 891
Cfr13I	GGNCC	3 cut(s)	176, 201, 994
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	5 cut(s)	256, 400, 469, 743, 834
CviAII	CATG	3 cut(s)	609, 632, 781
CviQI	GTAC	5 cut(s)	256, 400, 469, 743, 834
DdeI	CTNAG	4 cut(s)	351, 623, 690, 1037
DpnI	GATC	5 cut(s)	230, 278, 363, 378, 447
DpnII	GATC	5 cut(s)	228, 276, 361, 376, 445
EaeI	YGGCCR	3 cut(s)	195, 319, 431
EagI	CGGCCG	2 cut(s)	195, 319
Eam1104I	CTCTTC	2 cut(s)	794, 935
EarI	CTCTTC	2 cut(s)	794, 935
EclXI	CGGCCG	2 cut(s)	195, 319
Eco130I	CCWWGG	1 cut(s)	874
Eco31I	GGTCTC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	176, 201
Eco52I	CGGCCG	2 cut(s)	195, 319
Eco57I	CTGAAG	3 cut(s)	377, 449, 827
EcoNI	CCTNNNNNAGG	1 cut(s)	989
EcoO109I	RGGNCCY	2 cut(s)	201, 994
EcoRII	CCWGG	3 cut(s)	224, 811, 1114
EcoT14I	CCWWGG	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	874
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	612, 635, 784
FaiI	YATR	9 cut(s)	567, 610, 633, 767, 773, 782, 1017, 1100, 1148
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	3 cut(s)	608, 631, 780
FauI	CCCGC	3 cut(s)	375, 388, 443
Fnu4HI	GCNGC	3 cut(s)	322, 431, 1071
FokI	GGATG	2 cut(s)	109, 1047
Fsp4HI	GCNGC	3 cut(s)	322, 431, 1071
FspBI	CTAG	2 cut(s)	384, 846
GluI	GCNGC	3 cut(s)	322, 431, 1071
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	4 cut(s)	197, 321, 433, 995
HapII	CCGG	6 cut(s)	163, 174, 194, 198, 599, 892
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	612, 635, 784
HincII	GTYRAC	3 cut(s)	592, 604, 757
HindII	GTYRAC	3 cut(s)	592, 604, 757
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	4 cut(s)	554, 617, 969, 976
HpaII	CCGG	6 cut(s)	163, 174, 194, 198, 599, 892
HphI	GGTGA	2 cut(s)	834, 875
Hpy166II	GTNNAC	4 cut(s)	456, 592, 604, 757
Hpy188I	TCNGA	5 cut(s)	217, 396, 495, 642, 1049
Hpy188III	TCNNGA	5 cut(s)	9, 163, 632, 749, 973
Hpy8I	GTNNAC	4 cut(s)	456, 592, 604, 757
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	851
HpyCH4III	ACNGT	3 cut(s)	359, 518, 1155
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	6 cut(s)	270, 297, 677, 818, 1070, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 303
HpyF3I	CTNAG	4 cut(s)	351, 623, 690, 1037
HpySE526I	ACGT	1 cut(s)	1026
Hsp92II	CATG	3 cut(s)	612, 635, 784
Kpn2I	TCCGGA	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	228, 276, 361, 376, 445
LmnI	GCTCC	3 cut(s)	155, 190, 221
Lsp1109I	GCAGC	1 cut(s)	1082
LweI	GCATC	2 cut(s)	14, 1045
MaeI	CTAG	2 cut(s)	384, 846
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	5 cut(s)	475, 512, 863, 887, 1027
MalI	GATC	5 cut(s)	230, 278, 363, 378, 447
MboI	GATC	5 cut(s)	228, 276, 361, 376, 445
MflI	RGATCY	2 cut(s)	228, 276
MluCI	AATT	4 cut(s)	158, 292, 532, 824
MlyI	GAGTC	1 cut(s)	963
MmeI	TCCRAC	1 cut(s)	339
MroI	TCCGGA	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	193
MseI	TTAA	1 cut(s)	1157
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	1073
MspI	CCGG	6 cut(s)	163, 174, 194, 198, 599, 892
MspR9I	CCNGG	5 cut(s)	174, 199, 226, 813, 1116
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	3 cut(s)	226, 813, 1116
MvnI	CGCG	2 cut(s)	324, 450
MwoI	GCNNNNNNNGC	2 cut(s)	294, 303
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	174, 199
NdeII	GATC	5 cut(s)	228, 276, 361, 376, 445
NgoMIV	GCCGGC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	612, 635, 784
NlaIV	GGNNCC	6 cut(s)	178, 192, 202, 223, 735, 872
NmuCI	GTSAC	1 cut(s)	863
PagI	TCATGA	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	554, 617, 976
PflMI	CCANNNNNTGG	1 cut(s)	1021
PkrI	GCNGC	3 cut(s)	323, 432, 1072
PleI	GAGTC	1 cut(s)	963
PpsI	GAGTC	1 cut(s)	963
PpuMI	RGGWCCY	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	224, 811, 1114
PspGI	CCWGG	3 cut(s)	224, 811, 1114
PspN4I	GGNNCC	6 cut(s)	178, 192, 202, 223, 735, 872
PspPI	GGNCC	3 cut(s)	176, 201, 994
PspPPI	RGGWCCY	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	1072
PsuI	RGATCY	2 cut(s)	228, 276
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	5 cut(s)	257, 401, 470, 744, 835
RsaNI	GTAC	5 cut(s)	256, 400, 469, 743, 834
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	1 cut(s)	1157
SatI	GCNGC	3 cut(s)	322, 431, 1071
Sau3AI	GATC	5 cut(s)	228, 276, 361, 376, 445
Sau96I	GGNCC	3 cut(s)	176, 201, 994
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	1 cut(s)	963
ScrFI	CCNGG	5 cut(s)	174, 199, 226, 813, 1116
SfaNI	GCATC	2 cut(s)	14, 1045
SfcI	CTRYAG	1 cut(s)	1068
SinI	GGWCC	2 cut(s)	176, 201
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
Sse9I	AATT	4 cut(s)	158, 292, 532, 824
SsiI	CCGC	5 cut(s)	322, 368, 381, 430, 450
SspMI	CTAG	2 cut(s)	384, 846
StyD4I	CCNGG	5 cut(s)	172, 197, 224, 811, 1114
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	3 cut(s)	359, 518, 1155
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	4 cut(s)	8, 375, 684, 762
TasI	AATT	4 cut(s)	158, 292, 532, 824
TatI	WGTACW	3 cut(s)	399, 468, 742
TauI	GCSGC	2 cut(s)	324, 433
TfiI	GAWTC	3 cut(s)	554, 617, 976
Tru1I	TTAA	1 cut(s)	1157
Tru9I	TTAA	1 cut(s)	1157
TscAI	CASTG	3 cut(s)	362, 665, 1109
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	4 cut(s)	73, 620, 788, 1135
TspGWI	ACGGA	2 cut(s)	118, 203
TspRI	CASTG	3 cut(s)	362, 665, 1109
Van91I	CCANNNNNTGG	1 cut(s)	1021
VpaK11BI	GGWCC	2 cut(s)	176, 201
XagI	CCTNNNNNAGG	1 cut(s)	989
XapI	RAATTY	1 cut(s)	824
XspI	CTAG	2 cut(s)	384, 846
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.