Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Forward (+)

5438811 .. 5440600

Gene Structure 1790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCATCGAGAGACCTCTCTCACTTGCCAAGCCAGACAAAGAAAGTCCCTTTCTTCTTACCTCTCCTCTCCCTCCTCTGCTTCATTTCCATCTTCGCCGTTCTCTCTTACATTAGAAACACATCCTCCGTTCCCTCCCAACCTCACAGCTCCCTCCAATTCCGGAAACCCACCGGATCCGACCCGACAGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAGCCTGGATCCACGACCCGAATGCTTCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCCGCTAGGTTTCTTCAGATGTACAGAGACACCAGCATTGGGTTTATTGGTGACTCCTTGAACCGGAATATGTTTGTTTCGCTGTTCTGTTCGCTGAAACGCGTGTCGAGTGAAGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCAGCCAATTCTAATGGTGGCGTGCTGGAATCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTTGACACATGGGCAGAATCTCTAAGCTTTCATGACATTCTGATCTTCAACACAGGGCACTGGTATTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGATGTTGGCCTCGATATGGTTATGAAACACATGGTAATGTTTGTGGAGAAGAGACTGAAGCCTGGTTCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAATGTGGTTCTTGTAACCGGCAAAACCCTTTGTTGCCAGAGCGGTTGAAGAACTCTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

337

Amino Acids

38.48

Weight (kDa)

9.26

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 121	2.8e-14	PMR5 N terminal Domain
PC-Esterase	PF13839	122 - 333	2.4e-42	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	991
AccII	CGCG	3 cut(s)	324, 480, 525
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	6 cut(s)	322, 368, 381, 505, 525, 991
AclWI	GGATC	5 cut(s)	171, 184, 223, 236, 371
AcoI	YGGCCR	3 cut(s)	195, 319, 506
AcsI	RAATTY	1 cut(s)	899
AcuI	CTGAAG	3 cut(s)	377, 524, 902
AfaI	GTAC	5 cut(s)	257, 401, 545, 819, 910
AfiI	CCNNNNNNNGG	4 cut(s)	417, 441, 830, 841
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	7 cut(s)	283, 439, 724, 791, 894, 932, 997
AjnI	CCWGG	2 cut(s)	224, 886
AluBI	AGCT	2 cut(s)	150, 702
AluI	AGCT	2 cut(s)	150, 702
Alw26I	GTCTC	3 cut(s)	6, 399, 871
AlwI	GGATC	5 cut(s)	171, 184, 223, 236, 371
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	4 cut(s)	195, 319, 506, 832
ApoI	RAATTY	1 cut(s)	899
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	440, 909, 950
AvaII	GGWCC	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	735
BamHI	GGATCC	2 cut(s)	176, 228
BanII	GRGCYC	1 cut(s)	748
BccI	CCATC	2 cut(s)	98, 212
BceAI	ACGGC	3 cut(s)	83, 334, 355
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	226, 888
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	6, 399, 871
BfaI	CTAG	2 cut(s)	384, 921
BfuAI	ACCTGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	322, 506
BlsI	GCNGC	2 cut(s)	323, 507
BmcAI	AGTACT	1 cut(s)	819
Bme1390I	CCNGG	3 cut(s)	199, 226, 888
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	7 cut(s)	178, 202, 223, 230, 747, 810, 947
BmrFI	CCNGG	3 cut(s)	199, 226, 888
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	798
Bpu10I	CCTNAGC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	6
BsaWI	WCCGGW	4 cut(s)	162, 173, 441, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	417, 441, 830, 841
Bse118I	RCCGGY	2 cut(s)	193, 966
Bse1I	ACTGG	4 cut(s)	509, 740, 815, 947
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	226, 888
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	4 cut(s)	417, 441, 830, 841
BseNI	ACTGG	4 cut(s)	509, 740, 815, 947
BseRI	GAGGAG	2 cut(s)	56, 65
BseSI	GKGCMC	1 cut(s)	735
BseX3I	CGGCCG	2 cut(s)	195, 319
Bsh1236I	CGCG	3 cut(s)	324, 480, 525
Bsh1285I	CGRYCG	2 cut(s)	198, 322
BshFI	GGCC	4 cut(s)	197, 321, 508, 834
BsiEI	CGRYCG	2 cut(s)	198, 322
BsiSI	CCGG	7 cut(s)	163, 174, 194, 198, 442, 674, 967
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	417, 441, 830, 841
BsmAI	GTCTC	3 cut(s)	6, 399, 871
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	4 cut(s)	197, 321, 508, 834
Bso31I	GGTCTC	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	735, 748
Bsp13I	TCCGGA	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
BspACI	CCGC	6 cut(s)	322, 368, 381, 505, 525, 991
BspANI	GGCC	4 cut(s)	197, 321, 508, 834
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	3 cut(s)	324, 480, 525
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	7 cut(s)	178, 202, 223, 230, 747, 810, 947
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	5 cut(s)	171, 184, 223, 236, 371
BspTNI	GGTCTC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	991
BsrFI	RCCGGY	2 cut(s)	193, 966
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	4 cut(s)	509, 740, 815, 947
BssAI	RCCGGY	2 cut(s)	193, 966
BssMI	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
Bst2UI	CCWGG	2 cut(s)	226, 888
Bst4CI	ACNGT	2 cut(s)	359, 593
Bst6I	CTCTTC	2 cut(s)	869, 1009
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	195, 558, 623
BstDEI	CTNAG	2 cut(s)	351, 698
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	3 cut(s)	324, 480, 525
BstKTI	GATC	7 cut(s)	179, 231, 279, 364, 379, 523, 720
BstMAI	GTCTC	3 cut(s)	6, 399, 871
BstMBI	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
BstMCI	CGRYCG	2 cut(s)	198, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 303
BstNI	CCWGG	2 cut(s)	226, 888
BstSCI	CCNGG	3 cut(s)	197, 224, 886
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	3 cut(s)	324, 480, 525
BstX2I	RGATCY	3 cut(s)	176, 228, 276
BstYI	RGATCY	3 cut(s)	176, 228, 276
BstZI	CGGCCG	2 cut(s)	195, 319
BsuRI	GGCC	4 cut(s)	197, 321, 508, 834
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	355, 733
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	3 cut(s)	195, 558, 623
CciI	TCATGA	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	193, 966
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	256, 400, 544, 818, 909
CviAII	CATG	3 cut(s)	684, 707, 856
CviQI	GTAC	5 cut(s)	256, 400, 544, 818, 909
DdeI	CTNAG	2 cut(s)	351, 698
DpnI	GATC	7 cut(s)	178, 230, 278, 363, 378, 522, 719
DpnII	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
EaeI	YGGCCR	3 cut(s)	195, 319, 506
EagI	CGGCCG	2 cut(s)	195, 319
Eam1104I	CTCTTC	2 cut(s)	869, 1009
EarI	CTCTTC	2 cut(s)	869, 1009
EclXI	CGGCCG	2 cut(s)	195, 319
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	201
Eco52I	CGGCCG	2 cut(s)	195, 319
Eco57I	CTGAAG	3 cut(s)	377, 524, 902
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	224, 886
EcoT38I	GRGCYC	1 cut(s)	748
FaeI	CATG	3 cut(s)	687, 710, 859
FaiI	YATR	9 cut(s)	449, 642, 654, 685, 708, 767, 842, 848, 857
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	3 cut(s)	683, 706, 855
FauI	CCCGC	3 cut(s)	375, 388, 518
Fnu4HI	GCNGC	2 cut(s)	322, 506
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	2 cut(s)	322, 506
FspBI	CTAG	2 cut(s)	384, 921
GluI	GCNGC	2 cut(s)	322, 506
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	4 cut(s)	197, 321, 508, 834
HapII	CCGG	7 cut(s)	163, 174, 194, 198, 442, 674, 967
Hin1II	CATG	3 cut(s)	687, 710, 859
HincII	GTYRAC	2 cut(s)	667, 679
HindII	GTYRAC	2 cut(s)	667, 679
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	3 cut(s)	431, 629, 692
HpaII	CCGG	7 cut(s)	163, 174, 194, 198, 442, 674, 967
HphI	GGTGA	3 cut(s)	440, 909, 950
Hpy166II	GTNNAC	3 cut(s)	531, 667, 679
Hpy188I	TCNGA	5 cut(s)	181, 217, 396, 570, 717
Hpy188III	TCNNGA	4 cut(s)	9, 163, 707, 824
Hpy8I	GTNNAC	3 cut(s)	531, 667, 679
HpyAV	CCTTC	1 cut(s)	926
HpyCH4III	ACNGT	2 cut(s)	359, 593
HpyCH4V	TGCA	3 cut(s)	270, 297, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 303
HpyF3I	CTNAG	2 cut(s)	351, 698
Hsp92II	CATG	3 cut(s)	687, 710, 859
Kpn2I	TCCGGA	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
LmnI	GCTCC	3 cut(s)	155, 221, 751
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	384, 921
MaeIII	GTNAC	5 cut(s)	428, 550, 587, 938, 962
MalI	GATC	7 cut(s)	178, 230, 278, 363, 378, 522, 719
MbiI	CCGCTC	1 cut(s)	991
MboI	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
MboII	GAAGA	9 cut(s)	46, 85, 271, 383, 530, 712, 886, 996, 1009
MflI	RGATCY	3 cut(s)	176, 228, 276
MhlI	GDGCHC	2 cut(s)	735, 748
MluCI	AATT	4 cut(s)	158, 292, 607, 899
MluI	ACGCGT	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	2 cut(s)	204, 339
MroI	TCCGGA	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	860
MspI	CCGG	7 cut(s)	163, 174, 194, 198, 442, 674, 967
MspR9I	CCNGG	3 cut(s)	199, 226, 888
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	226, 888
MvnI	CGCG	3 cut(s)	324, 480, 525
MwoI	GCNNNNNNNGC	2 cut(s)	294, 303
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
NgoMIV	GCCGGC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	687, 710, 859
NlaIV	GGNNCC	7 cut(s)	178, 202, 223, 230, 747, 810, 947
NmuCI	GTSAC	2 cut(s)	428, 938
PagI	TCATGA	1 cut(s)	706
PaqCI	CACCTGC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	629, 692
PkrI	GCNGC	2 cut(s)	323, 507
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	224, 886
PspGI	CCWGG	2 cut(s)	224, 886
PspN4I	GGNNCC	7 cut(s)	178, 202, 223, 230, 747, 810, 947
PspPI	GGNCC	1 cut(s)	201
PspPPI	RGGWCCY	1 cut(s)	201
PsuI	RGATCY	3 cut(s)	176, 228, 276
RsaI	GTAC	5 cut(s)	257, 401, 545, 819, 910
RsaNI	GTAC	5 cut(s)	256, 400, 544, 818, 909
RseI	CAYNNNNRTG	1 cut(s)	860
SatI	GCNGC	2 cut(s)	322, 506
Sau3AI	GATC	7 cut(s)	176, 228, 276, 361, 376, 520, 717
Sau96I	GGNCC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	819
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	3 cut(s)	199, 226, 888
SduI	GDGCHC	2 cut(s)	735, 748
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	860
Sse9I	AATT	4 cut(s)	158, 292, 607, 899
SsiI	CCGC	6 cut(s)	322, 368, 381, 505, 525, 991
SspMI	CTAG	2 cut(s)	384, 921
StyD4I	CCNGG	3 cut(s)	197, 224, 886
TaaI	ACNGT	2 cut(s)	359, 593
TaqI	TCGA	4 cut(s)	8, 375, 485, 837
TasI	AATT	4 cut(s)	158, 292, 607, 899
TatI	WGTACW	3 cut(s)	399, 543, 817
TauI	GCSGC	2 cut(s)	324, 508
TfiI	GAWTC	2 cut(s)	629, 692
TscAI	CASTG	2 cut(s)	362, 740
TseFI	GTSAC	2 cut(s)	428, 938
Tsp45I	GTSAC	2 cut(s)	428, 938
TspDTI	ATGAA	4 cut(s)	73, 695, 782, 863
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	362, 740
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	1 cut(s)	899
XspI	CTAG	2 cut(s)	384, 921
ZrmI	AGTACT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.