Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250203.1

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 477

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 323 bp

ggtttattggtgattccttgaaccggaatatgtttgttgcgcttttctgttcgctgaaacgcgtgtcgagtgaagtaaagaagtggcggccagttggtgctgaccgcgggttcacctttcttcagtacaatgttacgcttgcgtatcatcggacaaatcttttggctcgttatggtaggtggtcagccaattctaatggtggtgtgctggaatctcttggatataaagagggttatagagttgatgttgacattccggttgacacatgggcagaatctctaagctttcatgacattctgatcttcaacacagggcactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

106

Amino Acids

12.16

Weight (kDa)

8.87

Isoelectric Point (pI)

17.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 107
AciI	CCGC	3 cut(s)	87, 105, 107
AcoI	YGGCCR	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	21, 306
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
AoxI	GGCC	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	22, 105
BaeGI	GKGCMC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	2 cut(s)	23, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	91, 322
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	91, 322
BseSI	GKGCMC	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	62, 107
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	24, 256
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	3 cut(s)	87, 105, 107
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	62, 107
BspHI	TCATGA	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	91, 322
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	62, 107
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	2 cut(s)	62, 107
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	42
Cfr42I	CCGCGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	266, 289
CviJI	RGCY	4 cut(s)	90, 166, 187, 284
CviKI_1	RGCY	4 cut(s)	90, 166, 187, 284
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	106
FaeI	CATG	2 cut(s)	269, 292
FaiI	YATR	6 cut(s)	31, 173, 224, 236, 267, 290
FatI	CATG	2 cut(s)	265, 288
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	24, 256
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	269, 292
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	2 cut(s)	249, 261
HindII	GTYRAC	2 cut(s)	249, 261
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	3 cut(s)	13, 211, 274
HpaII	CCGG	2 cut(s)	24, 256
HphI	GGTGA	2 cut(s)	22, 105
Hpy166II	GTNNAC	3 cut(s)	113, 249, 261
Hpy188I	TCNGA	2 cut(s)	152, 299
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	3 cut(s)	113, 249, 261
HpyF3I	CTNAG	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	269, 292
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	37, 104, 193, 269, 296, 303
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	112, 294
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	189
MluI	ACGCGT	1 cut(s)	60
MnlI	CCTC	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	24, 256
MvnI	CGCG	2 cut(s)	62, 107
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	269, 292
PagI	TCATGA	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	13, 211, 274
PkrI	GCNGC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SacII	CCGCGG	1 cut(s)	108
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	3 cut(s)	118, 181, 286
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	3 cut(s)	87, 105, 107
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	13, 211, 274
TscAI	CASTG	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.