Rw6G003420

Protein trichome birefringence-like 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003034
Physical Location & Seq
Forward (+)
5422325 .. 5424749
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003420.1

Sequence Viewer

Length: 1125 bp
ATGGTTACCGTCTATATATATACCTGGACAGTGCAGCATGGCATCGATAGACCTCTCTCAGACAAAGAAAGTCCCTCCCTTCTTCCCTCTCCTCTCCCTACCCAACCTCACAACTCCTTCCAATTCCGGAAACCCCCCAGATCCGACTCGACAGAGCCGGCCGGGTCCTGCGACTACTCCGATGGAACCTGGATCTACGACCTGAATGCGTCTCCCAAGTACGACAACTCCTTGGAGGTGGAACCTAAGCACTGTGATCTCCCGCCGTTCAATCCCGTTAGGTTTCTTCAGATGTACAGAGACACCAGCATTGGGTTTATTGGTGATTCCTTGAACAGGAACATGTTTGTTTCTGAAGTAAAGAAGTGGCTGCCAGTTGGTGCTGATCGCGGGTTCACATTTCTTCAGTATAATGTTACGCTTGCATATCATAGGACAAATCTTTTGCCTCGTTACGGTAGGTGGTCAGCCATATCTGATGGTGGCGTGCTGGAATCACTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTTGACACGTGGGCAGAATCTCTAAGCGTTCATGACATTCTGATATTCAACACAGGGCACTGGTGGTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGAGGCTGGCCTCGATATGGTTATGAAACATATGGTAATGTTTTTAGAGAAGAGACTGAAACCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACTGGCAAAATCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTGTTCATAGCACAGTTAAATAATGTCAGATTTAGAACAAAATAA

Protein Analysis

374

Amino Acids

42.68

Weight (kDa)

6.05

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 87 - 364 5.2e-58 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 847
AccB7I CCANNNNNTGG 1 cut(s) 961
AccII CGCG 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 2 cut(s) 263, 390
AclWI GGATC 2 cut(s) 135, 200
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 764
AcuI CTGAAG 3 cut(s) 272, 375, 389
AcvI CACGTG 1 cut(s) 549
AfaI GTAC 4 cut(s) 221, 296, 684, 775
AfiI CCNNNNNNNGG 8 cut(s) 312, 336, 455, 695, 706, 931, 942, 961
AflIII ACRYGT 2 cut(s) 342, 546
AgsI TTSAA 7 cut(s) 271, 334, 589, 656, 797, 863, 880
AjnI CCWGG 4 cut(s) 23, 188, 751, 1054
AleI CACNNNNGTG 1 cut(s) 978
AluBI AGCT 1 cut(s) 1013
AluI AGCT 1 cut(s) 1013
Alw26I GTCTC 3 cut(s) 216, 294, 736
AlwI GGATC 2 cut(s) 135, 200
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 3 cut(s) 159, 697, 933
ApeKI GCWGC 3 cut(s) 34, 370, 1010
ApoI RAATTY 1 cut(s) 764
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
AspS9I GGNCC 2 cut(s) 165, 934
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 335, 774, 815
AvaII GGWCC 1 cut(s) 165
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 613
BauI CACGAG 1 cut(s) 911
BbrPI CACGTG 1 cut(s) 549
BbvI GCAGC 3 cut(s) 46, 357, 1022
BccI CCATC 4 cut(s) 176, 473, 1008, 1012
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 4 cut(s) 25, 190, 753, 1056
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 216, 294, 736
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 1 cut(s) 1008
BfuAI ACCTGC 1 cut(s) 847
BisI GCNGC 3 cut(s) 35, 371, 1011
BlsI GCNGC 3 cut(s) 36, 372, 1012
BmcAI AGTACT 1 cut(s) 684
Bme1390I CCNGG 5 cut(s) 25, 163, 190, 753, 1056
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 165, 934
BmiI GGNNCC 6 cut(s) 166, 187, 243, 612, 675, 812
BmrFI CCNGG 5 cut(s) 25, 163, 190, 753, 1056
BmsI GCATC 2 cut(s) 51, 985
BpmI CTGGAG 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 999
BsaJI CCNNGG 2 cut(s) 231, 814
BsaWI WCCGGW 2 cut(s) 126, 538
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 8 cut(s) 312, 336, 455, 695, 706, 931, 942, 961
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 6 cut(s) 374, 605, 680, 812, 836, 1049
Bse21I CCTNAGG 1 cut(s) 690
Bse8I GATNNNNATC 1 cut(s) 999
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 4 cut(s) 25, 190, 753, 1056
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 231, 814
BseGI GGATG 1 cut(s) 1000
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 8 cut(s) 312, 336, 455, 695, 706, 931, 942, 961
BseMII CTCAG 3 cut(s) 72, 681, 968
BseNI ACTGG 6 cut(s) 374, 605, 680, 812, 836, 1049
BseRI GAGGAG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 600
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 46, 357, 1022
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 390
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 161, 699, 935
BshVI ATCGAT 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 4 cut(s) 127, 158, 162, 539
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 8 cut(s) 312, 336, 455, 695, 706, 931, 942, 961
BsmAI GTCTC 3 cut(s) 216, 294, 736
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 3 cut(s) 161, 699, 935
Bsp1286I GDGCHC 2 cut(s) 600, 613
Bsp13I TCCGGA 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 4 cut(s) 140, 192, 256, 385
BspACI CCGC 2 cut(s) 263, 390
BspANI GGCC 3 cut(s) 161, 699, 935
BspCNI CTCAG 3 cut(s) 71, 682, 969
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 126
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 6 cut(s) 166, 187, 243, 612, 675, 812
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 1 cut(s) 847
BspPI GGATC 2 cut(s) 135, 200
BsrFI RCCGGY 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 6 cut(s) 374, 605, 680, 812, 836, 1049
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 231, 814
BssMI GATC 4 cut(s) 140, 192, 256, 385
BssSI CACGAG 1 cut(s) 911
BssT1I CCWWGG 2 cut(s) 231, 814
Bst2BI CACGAG 1 cut(s) 911
Bst2UI CCWGG 4 cut(s) 25, 190, 753, 1056
Bst4CI ACNGT 5 cut(s) 10, 31, 254, 458, 1095
Bst6I CTCTTC 2 cut(s) 734, 875
BstAUI TGTACA 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 549
BstC8I GCNNGC 5 cut(s) 159, 423, 488, 697, 1052
BstDEI CTNAG 5 cut(s) 58, 246, 563, 690, 977
BstEII GGTNACC 1 cut(s) 4
BstENI CCTNNNNNAGG 2 cut(s) 334, 929
BstF5I GGATG 1 cut(s) 1000
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 4 cut(s) 143, 195, 259, 388
BstMAI GTCTC 3 cut(s) 216, 294, 736
BstMBI GATC 4 cut(s) 140, 192, 256, 385
BstMCI CGRYCG 1 cut(s) 162
BstNI CCWGG 4 cut(s) 25, 190, 753, 1056
BstNSI RCATGY 1 cut(s) 346
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 5 cut(s) 23, 161, 188, 751, 1054
BstSFI CTRYAG 1 cut(s) 1008
BstSLI GKGCMC 1 cut(s) 600
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 46, 357, 1022
BstX2I RGATCY 2 cut(s) 140, 192
BstYI RGATCY 2 cut(s) 140, 192
BstZI CGGCCG 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 3 cut(s) 161, 699, 935
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 1 cut(s) 1000
BtsIMutI CAGTG 4 cut(s) 36, 250, 598, 1042
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 5 cut(s) 159, 423, 488, 697, 1052
CciI TCATGA 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 165, 934
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 198
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 4 cut(s) 220, 295, 683, 774
CviAII CATG 3 cut(s) 38, 343, 572
CviQI GTAC 4 cut(s) 220, 295, 683, 774
DdeI CTNAG 5 cut(s) 58, 246, 563, 690, 977
DpnI GATC 4 cut(s) 142, 194, 258, 387
DpnII GATC 4 cut(s) 140, 192, 256, 385
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 734, 875
EarI CTCTTC 2 cut(s) 734, 875
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 231, 814
Eco24I GRGCYC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 159
Eco57I CTGAAG 3 cut(s) 272, 375, 389
Eco72I CACGTG 1 cut(s) 549
Eco81I CCTNAGG 1 cut(s) 690
Eco91I GGTNACC 1 cut(s) 4
EcoNI CCTNNNNNAGG 2 cut(s) 334, 929
EcoO109I RGGNCCY 2 cut(s) 165, 934
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 23, 188, 751, 1054
EcoT14I CCWWGG 2 cut(s) 231, 814
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 2 cut(s) 231, 814
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 41, 346, 575
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 37, 342, 571
FauI CCCGC 2 cut(s) 270, 383
FauNDI CATATG 1 cut(s) 720
Fnu4HI GCNGC 3 cut(s) 35, 371, 1011
FokI GGATG 1 cut(s) 987
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 3 cut(s) 35, 371, 1011
FspBI CTAG 1 cut(s) 786
GluI GCNGC 3 cut(s) 35, 371, 1011
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 3 cut(s) 161, 699, 935
HapII CCGG 4 cut(s) 127, 158, 162, 539
HgaI GACGC 1 cut(s) 198
Hin1II CATG 3 cut(s) 41, 346, 575
HincII GTYRAC 2 cut(s) 532, 544
HindII GTYRAC 2 cut(s) 532, 544
HinfI GANTC 6 cut(s) 146, 326, 494, 557, 909, 916
HpaII CCGG 4 cut(s) 127, 158, 162, 539
HphI GGTGA 3 cut(s) 335, 774, 815
Hpy166II GTNNAC 3 cut(s) 396, 532, 544
Hpy188I TCNGA 9 cut(s) 61, 145, 181, 291, 355, 478, 582, 989, 1109
Hpy188III TCNNGA 4 cut(s) 127, 572, 689, 913
Hpy8I GTNNAC 3 cut(s) 396, 532, 544
HpyAV CCTTC 3 cut(s) 89, 127, 791
HpyCH4III ACNGT 5 cut(s) 10, 31, 254, 458, 1095
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 6 cut(s) 34, 425, 617, 758, 1010, 1042
HpyF3I CTNAG 5 cut(s) 58, 246, 563, 690, 977
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 3 cut(s) 41, 346, 575
Kpn2I TCCGGA 1 cut(s) 126
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 4 cut(s) 140, 192, 256, 385
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 3 cut(s) 46, 357, 1022
LweI GCATC 2 cut(s) 51, 985
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 1 cut(s) 786
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 5 cut(s) 4, 415, 452, 803, 827
MalI GATC 4 cut(s) 142, 194, 258, 387
MboI GATC 4 cut(s) 140, 192, 256, 385
MboII GAAGA 8 cut(s) 74, 278, 395, 751, 862, 875, 892, 1033
MflI RGATCY 2 cut(s) 140, 192
MhlI GDGCHC 2 cut(s) 600, 613
MluCI AATT 2 cut(s) 122, 764
MlyI GAGTC 2 cut(s) 140, 903
MmeI TCCRAC 1 cut(s) 168
MroI TCCGGA 1 cut(s) 126
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 1 cut(s) 1097
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 4 cut(s) 127, 158, 162, 539
MspR9I CCNGG 5 cut(s) 25, 163, 190, 753, 1056
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 4 cut(s) 25, 190, 753, 1056
MvnI CGCG 1 cut(s) 390
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 720
NdeII GATC 4 cut(s) 140, 192, 256, 385
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 3 cut(s) 41, 346, 575
NlaIV GGNNCC 6 cut(s) 166, 187, 243, 612, 675, 812
NmuCI GTSAC 1 cut(s) 803
NspI RCATGY 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 978
PagI TCATGA 1 cut(s) 571
PciI ACATGT 1 cut(s) 342
PctI GAATGC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 4 cut(s) 326, 494, 557, 916
PflMI CCANNNNNTGG 1 cut(s) 961
PkrI GCNGC 3 cut(s) 36, 372, 1012
PleI GAGTC 2 cut(s) 140, 903
PmaCI CACGTG 1 cut(s) 549
PmlI CACGTG 1 cut(s) 549
PpsI GAGTC 2 cut(s) 140, 903
Ppu21I YACGTR 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 165
PscI ACATGT 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 4 cut(s) 23, 188, 751, 1054
PspCI CACGTG 1 cut(s) 549
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 4 cut(s) 23, 188, 751, 1054
PspN4I GGNNCC 6 cut(s) 166, 187, 243, 612, 675, 812
PspPI GGNCC 2 cut(s) 165, 934
PspPPI RGGWCCY 1 cut(s) 165
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 2 cut(s) 140, 192
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 4 cut(s) 221, 296, 684, 775
RsaNI GTAC 4 cut(s) 220, 295, 683, 774
RseI CAYNNNNRTG 1 cut(s) 978
SaqAI TTAA 1 cut(s) 1097
SatI GCNGC 3 cut(s) 35, 371, 1011
Sau3AI GATC 4 cut(s) 140, 192, 256, 385
Sau96I GGNCC 2 cut(s) 165, 934
ScaI AGTACT 1 cut(s) 684
SchI GAGTC 2 cut(s) 140, 903
ScrFI CCNGG 5 cut(s) 25, 163, 190, 753, 1056
SduI GDGCHC 2 cut(s) 600, 613
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 2 cut(s) 51, 985
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 978
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
Sse9I AATT 2 cut(s) 122, 764
SsiI CCGC 2 cut(s) 263, 390
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 5 cut(s) 23, 161, 188, 751, 1054
StyI CCWWGG 2 cut(s) 231, 814
TaaI ACNGT 5 cut(s) 10, 31, 254, 458, 1095
TaiI ACGT 1 cut(s) 551
TaqI TCGA 3 cut(s) 45, 149, 702
TasI AATT 2 cut(s) 122, 764
TatI WGTACW 2 cut(s) 294, 682
TfiI GAWTC 4 cut(s) 326, 494, 557, 916
Tru1I TTAA 1 cut(s) 1097
Tru9I TTAA 1 cut(s) 1097
TscAI CASTG 4 cut(s) 36, 257, 605, 1049
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 3 cut(s) 34, 370, 1010
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 4 cut(s) 560, 647, 728, 1075
TspRI CASTG 4 cut(s) 36, 257, 605, 1049
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 165
XagI CCTNNNNNAGG 2 cut(s) 334, 929
XapI RAATTY 1 cut(s) 764
XceI RCATGY 1 cut(s) 346
XspI CTAG 1 cut(s) 786
ZrmI AGTACT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.