Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003034

Physical Location & Seq

Genomic Coordinates Forward (+)

3124799 .. 3128001

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAGGATGACAGTTGGATCTTCGTATAATTGTGAAAAGACTATTCAAAAGGAGATCCGTGAGGATTTGACCGTTAGATCGTCGTATAATTTTGTGAGGATGATTCTAAAGGCGATCTGGGACGATCCAACCGTTGGATTTTCGTATAATTGTGCAAAGATGATTCAAAAGGCGATCCATGAGGATCCGACCGTTGGATCGTCATATAATTTTGTGAGGATGATTCTAAGGGCGATCCGGGACGATCCAACCGTTGGATCTTCGTACAATTTTGAGAGGATGAATCTAAGGGCGATCCGTGAGGATCTGACCTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCCGCGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTCGATCCCGCTAGGTTTCTTCAGATGTACAGAGACAACAGCATTGGGTTTATTGGTGATTCCTTGAACCGGAATATGTTTGTTGCGCTTTTATGTTCGCTGAAACGCGTGTCAAGTGAAGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGAGGGTTCACTTTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCAGCCAATTCTAATGGTGGCGTGCTGGAATCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTTGACACATGGGCAGAATCTCTCAGCTTTCATGACATTCTGATATTCAACACAGGGCACTGGTATTGGGCTCCTGCAAAGTTTGATCCTATGAAGTCACCTTTGCTTTTCTTTGAAAATGGTCAGCCTGTGGTTCCTCCAGTACTTCCTGATGTTGGCCTCGATATGGTCATGAAACACATGGTAATGTTTGTGCAGAAGAGACTGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCTCCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGAAAAATCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATATAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCTCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTTTTTATAGCACAGTTAAATAATGTCAGATTTAAAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

438

Amino Acids

50.48

Weight (kDa)

9.05

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	103 - 140	1e-07	PMR5 N terminal Domain
PC-Esterase	PF13839	141 - 428	3e-67	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14530
fragaria_vesca	FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780 FvH4_2g02780
malus_domestica	MD10G1114100.v1.1
prunus_persica	Prupe.8G155600_v2.0.a1
pyrus_communis	pycom05g10660 pycom10g09850
rosa_chinensis	RchiOBHm_Chr6g0247241 RchiOBHm_Chr6g0247271
rosa_laevigata	RLG00000034791 RLG00000034793
rosa_multiflora	Rmu_co8250203.1_g000001 Rmu_sc0000745.1_g000038 Rmu_sc0000745.1_g000042 Rmu_sc0003226.1_g000010 Rmu_sc0003226.1_g000047 Rmu_sc0004368.1_g000009 Rmu_sc0004368.1_g000017
rosa_roxburghii	Rroxscaffold_180G00433570 Rroxscaffold_7G00214220
rosa_rugosa	Rorug05G0524400
rosa_samantha	Rh6AG038700 Rh6AG039700 Rh6BG033700 Rh6BG034000 Rh6BG034700 Rh6BG034900 Rh6CG034400 Rh6DG032000
rosa_wichuraiana	Rw6G003340 Rw6G003370 Rw6G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	2 cut(s)	332, 1039
AccB7I	CCANNNNNTGG	3 cut(s)	134, 254, 1153
AccII	CGCG	2 cut(s)	381, 537
AciI	CCGC	4 cut(s)	379, 425, 438, 562
AcoI	YGGCCR	2 cut(s)	376, 563
AcsI	RAATTY	1 cut(s)	956
AcuI	CTGAAG	3 cut(s)	434, 581, 959
AfaI	GTAC	5 cut(s)	266, 458, 602, 876, 967
AfiI	CCNNNNNNNGG	9 cut(s)	134, 194, 254, 498, 887, 898, 1123, 1134, 1153
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	9 cut(s)	47, 167, 340, 496, 781, 848, 989, 1055, 1072
AjnI	CCWGG	2 cut(s)	943, 1246
AleI	CACNNNNGTG	1 cut(s)	1170
AluBI	AGCT	2 cut(s)	759, 1205
AluI	AGCT	2 cut(s)	759, 1205
Alw26I	GTCTC	2 cut(s)	456, 928
AoxI	GGCC	4 cut(s)	376, 563, 889, 1125
ApeKI	GCWGC	1 cut(s)	1202
ApoI	RAATTY	1 cut(s)	956
ArsI	GACNNNNNNTTYG	2 cut(s)	619, 651
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	1126
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	497, 822, 1007
BaeGI	GKGCMC	1 cut(s)	792
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	805
BauI	CACGAG	1 cut(s)	1103
BbvI	GCAGC	1 cut(s)	1214
BccI	CCATC	1 cut(s)	1204
BceAI	ACGGC	2 cut(s)	391, 412
BciT130I	CCWGG	2 cut(s)	945, 1248
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	456, 928
BfaI	CTAG	2 cut(s)	441, 978
BfmI	CTRYAG	1 cut(s)	1200
BfuAI	ACCTGC	2 cut(s)	332, 1039
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	3 cut(s)	379, 563, 1203
BlsI	GCNGC	3 cut(s)	380, 564, 1204
BmcAI	AGTACT	1 cut(s)	876
Bme1390I	CCNGG	3 cut(s)	239, 945, 1248
BmgT120I	GGNCC	1 cut(s)	1126
BmiI	GGNNCC	4 cut(s)	186, 804, 867, 1004
BmrFI	CCNGG	3 cut(s)	239, 945, 1248
BmsI	GCATC	1 cut(s)	1177
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	1151
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	1191
BsaJI	CCNNGG	1 cut(s)	1006
BsaWI	WCCGGW	3 cut(s)	498, 730, 1023
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	9 cut(s)	134, 194, 254, 498, 887, 898, 1123, 1134, 1153
Bse1I	ACTGG	5 cut(s)	566, 797, 872, 1004, 1241
Bse8I	GATNNNNATC	1 cut(s)	1191
BseBI	CCWGG	2 cut(s)	945, 1248
BseDI	CCNNGG	1 cut(s)	1006
BseGI	GGATG	5 cut(s)	12, 105, 225, 285, 1192
BseJI	GATNNNNATC	1 cut(s)	1191
BseLI	CCNNNNNNNGG	9 cut(s)	134, 194, 254, 498, 887, 898, 1123, 1134, 1153
BseMII	CTCAG	2 cut(s)	769, 1160
BseNI	ACTGG	5 cut(s)	566, 797, 872, 1004, 1241
BseSI	GKGCMC	1 cut(s)	792
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	1214
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	2 cut(s)	381, 537
Bsh1285I	CGRYCG	2 cut(s)	192, 379
BshFI	GGCC	4 cut(s)	378, 565, 891, 1127
BsiEI	CGRYCG	2 cut(s)	192, 379
BsiSI	CCGG	4 cut(s)	238, 499, 731, 1024
BslFI	GGGAC	2 cut(s)	134, 254
BslI	CCNNNNNNNGG	9 cut(s)	134, 194, 254, 498, 887, 898, 1123, 1134, 1153
BsmAI	GTCTC	2 cut(s)	456, 928
BsmFI	GGGAC	2 cut(s)	134, 254
BsnI	GGCC	4 cut(s)	378, 565, 891, 1127
Bsp1286I	GDGCHC	2 cut(s)	792, 805
Bsp1407I	TGTACA	1 cut(s)	456
BspACI	CCGC	4 cut(s)	379, 425, 438, 562
BspANI	GGCC	4 cut(s)	378, 565, 891, 1127
BspCNI	CTCAG	2 cut(s)	768, 1161
BspFNI	CGCG	2 cut(s)	381, 537
BspHI	TCATGA	2 cut(s)	763, 903
BspLI	GGNNCC	4 cut(s)	186, 804, 867, 1004
BspMAI	CTGCAG	1 cut(s)	1204
BspMI	ACCTGC	2 cut(s)	332, 1039
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	5 cut(s)	566, 797, 872, 1004, 1241
BssECI	CCNNGG	1 cut(s)	1006
BssSI	CACGAG	1 cut(s)	1103
BssT1I	CCWWGG	1 cut(s)	1006
Bst2BI	CACGAG	1 cut(s)	1103
Bst2UI	CCWGG	2 cut(s)	945, 1248
Bst4CI	ACNGT	8 cut(s)	13, 73, 133, 193, 253, 416, 650, 1287
Bst6I	CTCTTC	2 cut(s)	926, 1067
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	3 cut(s)	615, 680, 1244
BstDEI	CTNAG	5 cut(s)	227, 287, 408, 755, 1169
BstENI	CCTNNNNNAGG	1 cut(s)	1121
BstF5I	GGATG	5 cut(s)	12, 105, 225, 285, 1192
BstFNI	CGCG	2 cut(s)	381, 537
BstHHI	GCGC	1 cut(s)	517
BstMAI	GTCTC	2 cut(s)	456, 928
BstMCI	CGRYCG	2 cut(s)	192, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 360
BstNI	CCWGG	2 cut(s)	945, 1248
BstSCI	CCNGG	3 cut(s)	237, 943, 1246
BstSFI	CTRYAG	1 cut(s)	1200
BstSLI	GKGCMC	1 cut(s)	792
BstUI	CGCG	2 cut(s)	381, 537
BstV1I	GCAGC	1 cut(s)	1214
BstX2I	RGATCY	6 cut(s)	17, 54, 184, 257, 304, 333
BstYI	RGATCY	6 cut(s)	17, 54, 184, 257, 304, 333
BstZI	CGGCCG	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	378, 565, 891, 1127
BtsCI	GGATG	5 cut(s)	12, 105, 225, 285, 1192
BtsIMutI	CAGTG	3 cut(s)	412, 790, 1234
BveI	ACCTGC	2 cut(s)	332, 1039
Cac8I	GCNNGC	3 cut(s)	615, 680, 1244
CciI	TCATGA	2 cut(s)	763, 903
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	1126
Csp6I	GTAC	5 cut(s)	265, 457, 601, 875, 966
CviAII	CATG	5 cut(s)	179, 741, 764, 904, 913
CviQI	GTAC	5 cut(s)	265, 457, 601, 875, 966
DdeI	CTNAG	5 cut(s)	227, 287, 408, 755, 1169
DraI	TTTAAA	1 cut(s)	1306
EaeI	YGGCCR	2 cut(s)	376, 563
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	926, 1067
EarI	CTCTTC	2 cut(s)	926, 1067
EclXI	CGGCCG	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	805
Eco52I	CGGCCG	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	434, 581, 959
EcoNI	CCTNNNNNAGG	1 cut(s)	1121
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	2 cut(s)	943, 1246
EcoT14I	CCWWGG	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	1006
FaeI	CATG	5 cut(s)	182, 744, 767, 907, 916
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	2 cut(s)	134, 254
FatI	CATG	5 cut(s)	178, 740, 763, 903, 912
FauI	CCCGC	2 cut(s)	432, 445
Fnu4HI	GCNGC	3 cut(s)	379, 563, 1203
FokI	GGATG	5 cut(s)	19, 112, 232, 292, 1179
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	3 cut(s)	379, 563, 1203
FspBI	CTAG	2 cut(s)	441, 978
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	3 cut(s)	379, 563, 1203
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	4 cut(s)	378, 565, 891, 1127
HapII	CCGG	4 cut(s)	238, 499, 731, 1024
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	182, 744, 767, 907, 916
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	2 cut(s)	724, 736
HindII	GTYRAC	2 cut(s)	724, 736
HinfI	GANTC	9 cut(s)	103, 163, 223, 283, 488, 686, 749, 1101, 1108
HpaII	CCGG	4 cut(s)	238, 499, 731, 1024
HphI	GGTGA	3 cut(s)	497, 822, 1007
Hpy166II	GTNNAC	3 cut(s)	588, 724, 736
Hpy188I	TCNGA	7 cut(s)	189, 309, 453, 627, 774, 1181, 1301
Hpy188III	TCNNGA	4 cut(s)	764, 881, 904, 1105
Hpy8I	GTNNAC	3 cut(s)	588, 724, 736
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	983
HpyCH4III	ACNGT	8 cut(s)	13, 73, 133, 193, 253, 416, 650, 1287
HpyCH4V	TGCA	8 cut(s)	155, 327, 354, 809, 928, 950, 1202, 1234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 360
HpyF3I	CTNAG	5 cut(s)	227, 287, 408, 755, 1169
Hsp92II	CATG	5 cut(s)	182, 744, 767, 907, 916
HspAI	GCGC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	1 cut(s)	1214
LweI	GCATC	1 cut(s)	1177
MaeI	CTAG	2 cut(s)	441, 978
MaeIII	GTNAC	5 cut(s)	607, 644, 828, 995, 1019
MflI	RGATCY	6 cut(s)	17, 54, 184, 257, 304, 333
MhlI	GDGCHC	2 cut(s)	792, 805
MluCI	AATT	8 cut(s)	28, 88, 148, 208, 268, 349, 664, 956
MluI	ACGCGT	1 cut(s)	535
MlyI	GAGTC	1 cut(s)	1095
MmeI	TCCRAC	7 cut(s)	115, 152, 175, 212, 235, 272, 396
MseI	TTAA	2 cut(s)	1289, 1305
MslI	CAYNNNNRTG	2 cut(s)	917, 1170
MspA1I	CMGCKG	1 cut(s)	1205
MspI	CCGG	4 cut(s)	238, 499, 731, 1024
MspR9I	CCNGG	3 cut(s)	239, 945, 1248
MvaI	CCWGG	2 cut(s)	945, 1248
MvnI	CGCG	2 cut(s)	381, 537
MwoI	GCNNNNNNNGC	2 cut(s)	351, 360
NciI	CCSGG	1 cut(s)	239
NlaIII	CATG	5 cut(s)	182, 744, 767, 907, 916
NlaIV	GGNNCC	4 cut(s)	186, 804, 867, 1004
NmuCI	GTSAC	2 cut(s)	828, 995
OliI	CACNNNNGTG	1 cut(s)	1170
PagI	TCATGA	2 cut(s)	763, 903
PaqCI	CACCTGC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 249
PfeI	GAWTC	8 cut(s)	103, 163, 223, 283, 488, 686, 749, 1108
PflMI	CCANNNNNTGG	3 cut(s)	134, 254, 1153
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	380, 564, 1204
PleI	GAGTC	1 cut(s)	1095
PpsI	GAGTC	1 cut(s)	1095
Psp6I	CCWGG	2 cut(s)	943, 1246
PspGI	CCWGG	2 cut(s)	943, 1246
PspN4I	GGNNCC	4 cut(s)	186, 804, 867, 1004
PspPI	GGNCC	1 cut(s)	1126
PstI	CTGCAG	1 cut(s)	1204
PsuI	RGATCY	6 cut(s)	17, 54, 184, 257, 304, 333
PvuII	CAGCTG	1 cut(s)	1205
RsaI	GTAC	5 cut(s)	266, 458, 602, 876, 967
RsaNI	GTAC	5 cut(s)	265, 457, 601, 875, 966
RseI	CAYNNNNRTG	2 cut(s)	917, 1170
SaqAI	TTAA	2 cut(s)	1289, 1305
SatI	GCNGC	3 cut(s)	379, 563, 1203
Sau96I	GGNCC	1 cut(s)	1126
ScaI	AGTACT	1 cut(s)	876
SchI	GAGTC	1 cut(s)	1095
ScrFI	CCNGG	3 cut(s)	239, 945, 1248
SduI	GDGCHC	2 cut(s)	792, 805
SfaNI	GCATC	1 cut(s)	1177
SfcI	CTRYAG	1 cut(s)	1200
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1170
SmlI	CTYRAG	1 cut(s)	1130
SmoI	CTYRAG	1 cut(s)	1130
Sse9I	AATT	8 cut(s)	28, 88, 148, 208, 268, 349, 664, 956
SsiI	CCGC	4 cut(s)	379, 425, 438, 562
SspMI	CTAG	2 cut(s)	441, 978
StyD4I	CCNGG	3 cut(s)	237, 943, 1246
StyI	CCWWGG	1 cut(s)	1006
TaaI	ACNGT	8 cut(s)	13, 73, 133, 193, 253, 416, 650, 1287
TaqI	TCGA	3 cut(s)	432, 580, 894
TasI	AATT	8 cut(s)	28, 88, 148, 208, 268, 349, 664, 956
TatI	WGTACW	3 cut(s)	456, 600, 874
TauI	GCSGC	2 cut(s)	381, 565
TfiI	GAWTC	8 cut(s)	103, 163, 223, 283, 488, 686, 749, 1108
Tru1I	TTAA	2 cut(s)	1289, 1305
Tru9I	TTAA	2 cut(s)	1289, 1305
TscAI	CASTG	3 cut(s)	419, 797, 1241
TseFI	GTSAC	2 cut(s)	828, 995
TseI	GCWGC	1 cut(s)	1202
Tsp45I	GTSAC	2 cut(s)	828, 995
TspDTI	ATGAA	4 cut(s)	296, 752, 839, 920
TspGWI	ACGGA	2 cut(s)	47, 287
TspRI	CASTG	3 cut(s)	419, 797, 1241
Van91I	CCANNNNNTGG	3 cut(s)	134, 254, 1153
XagI	CCTNNNNNAGG	1 cut(s)	1121
XapI	RAATTY	1 cut(s)	956
XspI	CTAG	2 cut(s)	441, 978
ZrmI	AGTACT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.