pycom10g09850

Protein trichome birefringence-like 13

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
13030010 .. 13032555
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09850.4

Sequence Viewer

Length: 1257 bp
ATGGCCTCCAGAGAGCAACACTCTCAACAGCAAAACCAGACGAGGAAAGTCCCACTCTTCCCTCTCCTCTCCCTCGTCTGCTTTGTCTCCATCTTCCTCGTCCTCTCCTCCATTCGAAAGACCTCCGTTCCTCCGCGGCCGCATAACGCGAGCTTCGAATTCCAAAAGACTGACGGATCCGACCCCAGTCGTCGGGGCGGGTCGTGTGACTACTCCGACGGAAAATGGATCCACGACCCGGATTCCCCTCCGAGGTACGACAATACCTGCAAGGAGATATTCAAGGGATGGAATTGCATTTCCAGCGGCAAATCCAACGGTCGGGAACTACTCAAGTGGAGATGGAAGCCCAAGGGTTGTGATCTACCGCCGTTCGATCCGGTTCGGTTTCTGAAGATGTACAGACACACCAGCATTGGGTTCGTTGGTGATTCATTGAACCGCAATATGTTTGTTTCGCTTTTCTGTTCTCTGAAACGAGCGTCAAGTGAAGTAAAGAAGTGGCGGCCAGCTGGTGCTGATCGCGGGTTTACATTTCTTCAGTATAATCTCACCCTTGCATACCATCGAACAAATCTTTTGGCACATTATGGTAGGTGGTCAGCCGATGCTAATGGTGGGGAGCTGGAATCTCTTGGATATAAGGAGGGCTATAGAGTTGATGTTGACATTCCAGATGGGACATGGGCAGAAGCTCTAAGCTTTCATGACATTCTGATCTTTAACACAGGGCACTGGTGGTGGGCTCCTTCAAAGTTTGACCCGACAAAGTCGCCCATGCTTTTTTTTGAAAAGGGTCAGCCCGTGGTTCCTCCAGTGCTCCCTAATGTTGGCCTTGATATGGTTTTGAACCACATGGTAATGCTTGTGGAGAACAGAACGAAACCAGGTGCAGTCAAATTGTTTCGTACTCAATCACCTAGACATTTTGAAGGGGGTGACTGGGACCAAGGTGGCTCTTGTAACCGGCTAAAGCCTTTATCAGTAGAGCAGGTTGAAGAACTCTTCTCAGTGAAGAATAATGGTACAAACGTGGAGGCACGCTTGGTGAATCAACACCTCTACAAGGCCCTTAAAGGATCAAGTTTCCAGATTTTGGACATAACCCACATGAGTGAGTTCAGAGCAGATGCCCATCCATCCACTGCCGGTGGAAAGAAGCACGACGATTGCATGCACTGGTGCTTGCCAGGATTAACAGATAGTTGGAATGACTTATTTATAGAGCAGCTAAACATCATTAGAAGTAGAAATTAA

Protein Analysis

419

Amino Acids

47.61

Weight (kDa)

8.94

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 275, 982
AccB7I CCANNNNNTGG 1 cut(s) 1096
AccII CGCG 3 cut(s) 136, 149, 525
AciI CCGC 9 cut(s) 134, 136, 140, 198, 306, 368, 442, 505, 525
AclWI GGATC 6 cut(s) 171, 184, 223, 236, 371, 1087
AcoI YGGCCR 2 cut(s) 137, 506
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 413, 524
AfaI GTAC 4 cut(s) 257, 401, 910, 1027
AfiI CCNNNNNNNGG 9 cut(s) 192, 238, 252, 321, 417, 830, 841, 1066, 1096
AgsI TTSAA 7 cut(s) 283, 439, 753, 791, 850, 932, 998
AjnI CCWGG 2 cut(s) 886, 1189
AleI CACNNNNGTG 1 cut(s) 1113
AluBI AGCT 6 cut(s) 153, 512, 625, 695, 702, 1231
AluI AGCT 6 cut(s) 153, 512, 625, 695, 702, 1231
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 6 cut(s) 171, 184, 223, 236, 371, 1087
AoxI GGCC 5 cut(s) 3, 137, 506, 832, 1068
ApeKI GCWGC 1 cut(s) 1228
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 946, 1069
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 5 cut(s) 440, 544, 909, 950, 1060
AsuII TTCGAA 2 cut(s) 115, 156
AvaII GGWCC 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 735
BaeI ACNNNNGTAYC 2 cut(s) 1017, 1050
BamHI GGATCC 2 cut(s) 176, 228
BanII GRGCYC 1 cut(s) 748
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 1240
BccI CCATC 7 cut(s) 98, 282, 336, 573, 671, 1143, 1147
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BciT130I CCWGG 2 cut(s) 888, 1191
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 1 cut(s) 652
BfuAI ACCTGC 2 cut(s) 275, 982
BisI GCNGC 5 cut(s) 137, 140, 307, 506, 1229
BlsI GCNGC 5 cut(s) 138, 141, 308, 507, 1230
Bme1390I CCNGG 3 cut(s) 239, 888, 1191
Bme18I GGWCC 1 cut(s) 946
BmgT120I GGNCC 2 cut(s) 946, 1069
BmiI GGNNCC 5 cut(s) 178, 230, 747, 810, 947
BmrFI CCNGG 3 cut(s) 239, 888, 1191
BmrI ACTGGG 2 cut(s) 180, 952
BmsI GCATC 2 cut(s) 598, 1120
BmuI ACTGGG 2 cut(s) 180, 952
BoxI GACNNNNGTC 1 cut(s) 186
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 798
Bpu14I TTCGAA 2 cut(s) 115, 156
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 1134
BsaJI CCNNGG 5 cut(s) 134, 251, 351, 804, 949
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 9 cut(s) 192, 238, 252, 321, 417, 830, 841, 1066, 1096
Bse118I RCCGGY 2 cut(s) 966, 1148
Bse1I ACTGG 5 cut(s) 186, 740, 815, 947, 1184
Bse8I GATNNNNATC 1 cut(s) 1134
BseBI CCWGG 2 cut(s) 888, 1191
BseDI CCNNGG 5 cut(s) 134, 251, 351, 804, 949
BseGI GGATG 3 cut(s) 293, 1135, 1139
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 9 cut(s) 192, 238, 252, 321, 417, 830, 841, 1066, 1096
BseMII CTCAG 1 cut(s) 1023
BseNI ACTGG 5 cut(s) 186, 740, 815, 947, 1184
BseRI GAGGAG 2 cut(s) 56, 97
BseSI GKGCMC 1 cut(s) 735
BseX3I CGGCCG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 1240
BsgI GTGCAG 1 cut(s) 912
Bsh1236I CGCG 3 cut(s) 136, 149, 525
Bsh1285I CGRYCG 2 cut(s) 140, 322
BshFI GGCC 5 cut(s) 5, 139, 508, 834, 1070
BsiEI CGRYCG 2 cut(s) 140, 322
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 4 cut(s) 239, 380, 967, 1149
BslFI GGGAC 3 cut(s) 35, 694, 959
BslI CCNNNNNNNGG 9 cut(s) 192, 238, 252, 321, 417, 830, 841, 1066, 1096
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 3 cut(s) 35, 694, 959
BsnI GGCC 5 cut(s) 5, 139, 508, 834, 1070
Bsp119I TTCGAA 2 cut(s) 115, 156
Bsp1286I GDGCHC 3 cut(s) 735, 748, 822
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
BspACI CCGC 9 cut(s) 134, 136, 140, 198, 306, 368, 442, 505, 525
BspANI GGCC 5 cut(s) 5, 139, 508, 834, 1070
BspCNI CTCAG 1 cut(s) 1022
BspFNI CGCG 3 cut(s) 136, 149, 525
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 5 cut(s) 178, 230, 747, 810, 947
BspMI ACCTGC 2 cut(s) 275, 982
BspPI GGATC 6 cut(s) 171, 184, 223, 236, 371, 1087
BspT104I TTCGAA 2 cut(s) 115, 156
BsrFI RCCGGY 2 cut(s) 966, 1148
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 5 cut(s) 186, 740, 815, 947, 1184
BssAI RCCGGY 2 cut(s) 966, 1148
BssECI CCNNGG 5 cut(s) 134, 251, 351, 804, 949
BssMI GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
BssT1I CCWWGG 2 cut(s) 351, 949
Bst2UI CCWGG 2 cut(s) 888, 1191
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 62, 1010
BstAUI TGTACA 1 cut(s) 399
BstBI TTCGAA 2 cut(s) 115, 156
BstC8I GCNNGC 5 cut(s) 151, 510, 1042, 1175, 1187
BstDEI CTNAG 2 cut(s) 698, 1009
BstDSI CCRYGG 2 cut(s) 134, 804
BstENI CCTNNNNNAGG 1 cut(s) 1064
BstF5I GGATG 3 cut(s) 293, 1135, 1139
BstFNI CGCG 3 cut(s) 136, 149, 525
BstKTI GATC 7 cut(s) 179, 231, 364, 379, 523, 720, 1082
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
BstMCI CGRYCG 2 cut(s) 140, 322
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 2 cut(s) 888, 1191
BstNSI RCATGY 1 cut(s) 1177
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 237, 886, 1189
BstSFI CTRYAG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 735
BstUI CGCG 3 cut(s) 136, 149, 525
BstV1I GCAGC 1 cut(s) 1240
BstX2I RGATCY 2 cut(s) 176, 228
BstYI RGATCY 2 cut(s) 176, 228
BstZI CGGCCG 1 cut(s) 137
BsuRI GGCC 5 cut(s) 5, 139, 508, 834, 1070
BtgI CCRYGG 2 cut(s) 134, 804
BtsCI GGATG 3 cut(s) 293, 1135, 1139
BtsI GCAGTG 1 cut(s) 1143
BtsIMutI CAGTG 5 cut(s) 733, 822, 1017, 1143, 1177
BveI ACCTGC 2 cut(s) 275, 982
Cac8I GCNNGC 5 cut(s) 151, 510, 1042, 1175, 1187
CciI TCATGA 1 cut(s) 706
CciNI GCGGCCGC 1 cut(s) 137
Cfr10I RCCGGY 2 cut(s) 966, 1148
Cfr13I GGNCC 2 cut(s) 946, 1069
Cfr42I CCGCGG 1 cut(s) 137
CseI GACGC 1 cut(s) 471
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 4 cut(s) 256, 400, 909, 1026
CviAII CATG 6 cut(s) 684, 707, 778, 856, 1111, 1174
CviQI GTAC 4 cut(s) 256, 400, 909, 1026
DdeI CTNAG 2 cut(s) 698, 1009
DpnI GATC 7 cut(s) 178, 230, 363, 378, 522, 719, 1081
DpnII GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
EaeI YGGCCR 2 cut(s) 137, 506
EagI CGGCCG 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 62, 1010
EarI CTCTTC 2 cut(s) 62, 1010
EclXI CGGCCG 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 351, 949
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 1 cut(s) 946
Eco52I CGGCCG 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 413, 524
EcoNI CCTNNNNNAGG 1 cut(s) 1064
EcoO109I RGGNCCY 1 cut(s) 1069
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 886, 1189
EcoT14I CCWWGG 2 cut(s) 351, 949
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 2 cut(s) 351, 949
FaeI CATG 6 cut(s) 687, 710, 781, 859, 1114, 1177
FaqI GGGAC 3 cut(s) 35, 694, 959
FatI CATG 6 cut(s) 683, 706, 777, 855, 1110, 1173
FauI CCCGC 2 cut(s) 191, 518
Fnu4HI GCNGC 5 cut(s) 137, 140, 307, 506, 1229
FokI GGATG 3 cut(s) 300, 1122, 1126
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 5 cut(s) 137, 140, 307, 506, 1229
FspBI CTAG 1 cut(s) 921
GluI GCNGC 5 cut(s) 137, 140, 307, 506, 1229
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 5 cut(s) 5, 139, 508, 834, 1070
HapII CCGG 4 cut(s) 239, 380, 967, 1149
HgaI GACGC 1 cut(s) 471
Hin1II CATG 6 cut(s) 687, 710, 781, 859, 1114, 1177
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 4 cut(s) 242, 431, 629, 1051
HpaII CCGG 4 cut(s) 239, 380, 967, 1149
HphI GGTGA 5 cut(s) 440, 544, 909, 950, 1060
Hpy166II GTNNAC 2 cut(s) 531, 667
Hpy188I TCNGA 7 cut(s) 181, 217, 252, 393, 474, 717, 1124
Hpy188III TCNNGA 5 cut(s) 9, 323, 674, 707, 1090
Hpy8I GTNNAC 2 cut(s) 531, 667
Hpy99I CGWCG 3 cut(s) 195, 221, 1169
HpyAV CCTTC 2 cut(s) 759, 926
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 1032
HpyCH4V TGCA 6 cut(s) 270, 297, 560, 893, 1173, 1177
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 2 cut(s) 698, 1009
HpySE526I ACGT 1 cut(s) 1032
Hsp92II CATG 6 cut(s) 687, 710, 781, 859, 1114, 1177
KspI CCGCGG 1 cut(s) 137
Kzo9I GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
LmnI GCTCC 3 cut(s) 622, 751, 825
Lsp1109I GCAGC 1 cut(s) 1240
LweI GCATC 2 cut(s) 598, 1120
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 1 cut(s) 921
MaeII ACGT 1 cut(s) 1032
MaeIII GTNAC 3 cut(s) 206, 938, 962
MalI GATC 7 cut(s) 178, 230, 363, 378, 522, 719, 1081
MboI GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
MboII GAAGA 7 cut(s) 49, 85, 406, 530, 997, 1010, 1027
MflI RGATCY 2 cut(s) 176, 228
MhlI GDGCHC 3 cut(s) 735, 748, 822
MluCI AATT 4 cut(s) 158, 292, 899, 1252
MmeI TCCRAC 4 cut(s) 204, 240, 339, 1187
MseI TTAA 4 cut(s) 723, 1074, 1196, 1255
MslI CAYNNNNRTG 2 cut(s) 860, 1113
MspA1I CMGCKG 3 cut(s) 136, 306, 512
MspI CCGG 4 cut(s) 239, 380, 967, 1149
MspR9I CCNGG 3 cut(s) 239, 888, 1191
MvaI CCWGG 2 cut(s) 888, 1191
MvnI CGCG 3 cut(s) 136, 149, 525
MwoI GCNNNNNNNGC 1 cut(s) 303
NciI CCSGG 1 cut(s) 239
NdeII GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
NlaIII CATG 6 cut(s) 687, 710, 781, 859, 1114, 1177
NlaIV GGNNCC 5 cut(s) 178, 230, 747, 810, 947
NmuCI GTSAC 2 cut(s) 206, 938
NotI GCGGCCGC 1 cut(s) 137
NspI RCATGY 1 cut(s) 1177
NspV TTCGAA 2 cut(s) 115, 156
OliI CACNNNNGTG 1 cut(s) 1113
PaeI GCATGC 1 cut(s) 1177
PagI TCATGA 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 4 cut(s) 242, 431, 629, 1051
PflFI GACNNNGTC 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 1096
PkrI GCNGC 5 cut(s) 138, 141, 308, 507, 1230
PshAI GACNNNNGTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 886, 1189
PspGI CCWGG 2 cut(s) 886, 1189
PspN4I GGNNCC 5 cut(s) 178, 230, 747, 810, 947
PspPI GGNCC 2 cut(s) 946, 1069
PsuI RGATCY 2 cut(s) 176, 228
PsyI GACNNNGTC 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 4 cut(s) 257, 401, 910, 1027
RsaNI GTAC 4 cut(s) 256, 400, 909, 1026
RseI CAYNNNNRTG 2 cut(s) 860, 1113
SacII CCGCGG 1 cut(s) 137
SaqAI TTAA 4 cut(s) 723, 1074, 1196, 1255
SatI GCNGC 5 cut(s) 137, 140, 307, 506, 1229
Sau3AI GATC 7 cut(s) 176, 228, 361, 376, 520, 717, 1079
Sau96I GGNCC 2 cut(s) 946, 1069
ScrFI CCNGG 3 cut(s) 239, 888, 1191
SduI GDGCHC 3 cut(s) 735, 748, 822
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 2 cut(s) 598, 1120
SfcI CTRYAG 1 cut(s) 652
Sfr303I CCGCGG 1 cut(s) 137
SfuI TTCGAA 2 cut(s) 115, 156
SgrBI CCGCGG 1 cut(s) 137
SinI GGWCC 1 cut(s) 946
SmiMI CAYNNNNRTG 2 cut(s) 860, 1113
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 1177
Sse9I AATT 4 cut(s) 158, 292, 899, 1252
SsiI CCGC 9 cut(s) 134, 136, 140, 198, 306, 368, 442, 505, 525
SspMI CTAG 1 cut(s) 921
StyD4I CCNGG 3 cut(s) 237, 886, 1189
StyI CCWWGG 2 cut(s) 351, 949
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 1035
TaqI TCGA 4 cut(s) 115, 156, 375, 568
TasI AATT 4 cut(s) 158, 292, 899, 1252
TatI WGTACW 1 cut(s) 399
TauI GCSGC 4 cut(s) 139, 142, 309, 508
TfiI GAWTC 4 cut(s) 242, 431, 629, 1051
Tru1I TTAA 4 cut(s) 723, 1074, 1196, 1255
Tru9I TTAA 4 cut(s) 723, 1074, 1196, 1255
TscAI CASTG 5 cut(s) 740, 822, 1017, 1150, 1184
TseFI GTSAC 2 cut(s) 206, 938
TseI GCWGC 1 cut(s) 1228
Tsp45I GTSAC 2 cut(s) 206, 938
TspDTI ATGAA 2 cut(s) 423, 695
TspGWI ACGGA 3 cut(s) 115, 189, 234
TspRI CASTG 5 cut(s) 740, 822, 1017, 1150, 1184
Tth111I GACNNNGTC 1 cut(s) 769
Van91I CCANNNNNTGG 1 cut(s) 1096
VpaK11BI GGWCC 1 cut(s) 946
XagI CCTNNNNNAGG 1 cut(s) 1064
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 681
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.