Rorug05G0524400

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002089
Physical Location & Seq
Reverse (-)
71154479 .. 71156190
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0524400.1

Sequence Viewer

Length: 759 bp
ATGTCCAGAGACAGTCTTTATAGCAGGGAGATCATAAGATTGAATGAGATTATAGGAGAGAAGATCATCGGGAGAGAAAGTGACATTCATTTCACATCTGCAGCTGATCAAATGGTAATGATGAGTCGACAGAACGACCAAATGAGTCAACTTCCAGGGATGACGACTTTGAACACAATCACACCTTGTGCTGCATGTAAGCTCTTGAGAAGAAAATGTGCTGAAGAATGCCCTTTCTCTCCCTATTTCTCCCCACATGAACCCCACAAATTTTCAGCTGTCCACAAAGTCTTTGGTGCAAGCAATGTCTCCAAGTTGCTAATGGAGGTGTCAGAGAACCAAAGAGCTGATGCTGCAAATAGTCTGGTTTATGAAGCAAACCTGAGATTGAGAGACCCGGTGTACGGATGCGTGGGTGTAATTTCAACCTTGCAGCAAAAAATTCAATCTTTACAAACAGAACTTCATGCTGTTAGGACCGAAATGTTAAGCTACAAGTATAAAGAAGCACCTAGTCAGATCGTTTCTTCTAGAGATCATATTCATCCTCATCATGCTGCTGCTGCTTTAGTTTCTTCTGGGATGGTGTCTATTGCTGCACCACCGCAATCAATTTTGACATCACCACCGGCTGCTCCTCCATCTTCCGTTATCTTTTCTTCGTCTTCTTCAACTTCAACTTCTTCTTTATATACACCCTCGACAAACACAACGGGTTATAGTTCCTTGTCAAGCGACAATCTCCCGTATTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

252

Amino Acids

27.57

Weight (kDa)

6.75

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 62 - 159 4.4e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 127
AciI CCGC 1 cut(s) 605
AcsI RAATTY 2 cut(s) 269, 441
AcuI CTGAAG 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 6 cut(s) 43, 172, 426, 446, 672, 678
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 5 cut(s) 104, 202, 278, 347, 492
AluI AGCT 5 cut(s) 104, 202, 278, 347, 492
Alw26I GTCTC 3 cut(s) 3, 313, 387
ApeKI GCWGC 9 cut(s) 101, 191, 353, 433, 557, 560, 563, 596, 632
ApoI RAATTY 2 cut(s) 269, 441
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 615
AvaII GGWCC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 657
BbvI GCAGC 9 cut(s) 113, 178, 340, 445, 544, 547, 550, 583, 619
BccI CCATC 2 cut(s) 577, 649
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 3, 313, 387
BfaI CTAG 2 cut(s) 513, 531
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 9 cut(s) 102, 192, 354, 434, 558, 561, 564, 597, 633
BlsI GCNGC 9 cut(s) 103, 193, 355, 435, 559, 562, 565, 598, 634
Bme1390I CCNGG 2 cut(s) 156, 398
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 156, 398
BmsI GCATC 2 cut(s) 340, 398
BpiI GAAGAC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse118I RCCGGY 1 cut(s) 628
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 4 cut(s) 165, 413, 544, 588
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 9 cut(s) 113, 178, 340, 445, 544, 547, 550, 583, 619
BsgI GTGCAG 1 cut(s) 582
BsiSI CCGG 2 cut(s) 398, 629
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 3 cut(s) 3, 313, 387
BsmI GAATGC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 387
Bsp143I GATC 5 cut(s) 30, 63, 106, 519, 535
BspACI CCGC 1 cut(s) 605
BspCNI CTCAG 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 5 cut(s) 30, 63, 106, 519, 535
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 383
BstF5I GGATG 4 cut(s) 165, 413, 544, 588
BstKTI GATC 5 cut(s) 33, 66, 109, 522, 538
BstMAI GTCTC 3 cut(s) 3, 313, 387
BstMBI GATC 5 cut(s) 30, 63, 106, 519, 535
BstMWI GCNNNNNNNGC 2 cut(s) 353, 563
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 154, 396
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 9 cut(s) 113, 178, 340, 445, 544, 547, 550, 583, 619
BstV2I GAAGAC 1 cut(s) 657
BtsCI GGATG 4 cut(s) 165, 413, 544, 588
Cac8I GCNNGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 1 cut(s) 403
CviAII CATG 4 cut(s) 195, 257, 467, 554
CviJI RGCY 6 cut(s) 104, 202, 278, 347, 492, 632
CviKI_1 RGCY 6 cut(s) 104, 202, 278, 347, 492, 632
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 383
DpnI GATC 5 cut(s) 32, 65, 108, 521, 537
DpnII GATC 5 cut(s) 30, 63, 106, 519, 535
DraIII CACNNNGTG 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 154
FaeI CATG 4 cut(s) 198, 260, 470, 557
FatI CATG 4 cut(s) 194, 256, 466, 553
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 9 cut(s) 102, 192, 354, 434, 558, 561, 564, 597, 633
FokI GGATG 4 cut(s) 172, 420, 531, 595
Fsp4HI GCNGC 9 cut(s) 102, 192, 354, 434, 558, 561, 564, 597, 633
FspBI CTAG 2 cut(s) 513, 531
GluI GCNGC 9 cut(s) 102, 192, 354, 434, 558, 561, 564, 597, 633
HapII CCGG 2 cut(s) 398, 629
Hin1II CATG 4 cut(s) 198, 260, 470, 557
HincII GTYRAC 2 cut(s) 128, 149
HindII GTYRAC 2 cut(s) 128, 149
HinfI GANTC 2 cut(s) 124, 145
HpaII CCGG 2 cut(s) 398, 629
HphI GGTGA 1 cut(s) 615
Hpy166II GTNNAC 4 cut(s) 128, 149, 283, 403
Hpy188I TCNGA 2 cut(s) 334, 519
Hpy188III TCNNGA 4 cut(s) 6, 70, 205, 531
Hpy8I GTNNAC 4 cut(s) 128, 149, 283, 403
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 6 cut(s) 101, 194, 299, 356, 433, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 563
HpyF3I CTNAG 1 cut(s) 383
Hsp92II CATG 4 cut(s) 198, 260, 470, 557
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 5 cut(s) 30, 63, 106, 519, 535
LmnI GCTCC 1 cut(s) 640
LpnPI CCDG 9 cut(s) 10, 19, 141, 168, 350, 395, 411, 564, 642
Lsp1109I GCAGC 9 cut(s) 113, 178, 340, 445, 544, 547, 550, 583, 619
LweI GCATC 2 cut(s) 340, 398
MaeI CTAG 2 cut(s) 513, 531
MaeIII GTNAC 1 cut(s) 80
MalI GATC 5 cut(s) 32, 65, 108, 521, 537
MboI GATC 5 cut(s) 30, 63, 106, 519, 535
MluCI AATT 4 cut(s) 269, 420, 441, 612
MlyI GAGTC 2 cut(s) 133, 154
MnlI CCTC 4 cut(s) 319, 558, 648, 709
MseI TTAA 2 cut(s) 488, 757
MspA1I CMGCKG 2 cut(s) 104, 278
MspI CCGG 2 cut(s) 398, 629
MspR9I CCNGG 2 cut(s) 156, 398
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 353, 563
NciI CCSGG 1 cut(s) 398
NdeII GATC 5 cut(s) 30, 63, 106, 519, 535
NlaIII CATG 4 cut(s) 198, 260, 470, 557
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 198
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 9 cut(s) 103, 193, 355, 435, 559, 562, 565, 598, 634
PleI GAGTC 2 cut(s) 132, 153
PpsI GAGTC 2 cut(s) 132, 153
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspPI GGNCC 1 cut(s) 477
PstI CTGCAG 1 cut(s) 103
PvuII CAGCTG 2 cut(s) 104, 278
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 488, 757
SatI GCNGC 9 cut(s) 102, 192, 354, 434, 558, 561, 564, 597, 633
Sau3AI GATC 5 cut(s) 30, 63, 106, 519, 535
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 133, 154
ScrFI CCNGG 2 cut(s) 156, 398
SfaNI GCATC 2 cut(s) 340, 398
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 4 cut(s) 269, 420, 441, 612
SsiI CCGC 1 cut(s) 605
SspMI CTAG 2 cut(s) 513, 531
StyD4I CCNGG 2 cut(s) 154, 396
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 127, 701
TaqII GACCGA 1 cut(s) 494
TasI AATT 4 cut(s) 269, 420, 441, 612
Tru1I TTAA 2 cut(s) 488, 757
Tru9I TTAA 2 cut(s) 488, 757
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 9 cut(s) 101, 191, 353, 433, 557, 560, 563, 596, 632
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 77, 273, 387, 455, 533
TspGWI ACGGA 2 cut(s) 420, 637
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 2 cut(s) 269, 441
XbaI TCTAGA 1 cut(s) 530
XceI RCATGY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 2 cut(s) 290, 319
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 2 cut(s) 513, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.