FvH4_2g02760

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002089
Physical Location & Seq
Reverse (-)
2181602 .. 2183829
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02760.t1

Sequence Viewer

Length: 1098 bp
ATGGCAGCTTCTTCAGATTTGCAGACAACTTCTGAATCTATCAACCACAGTGATGATGGTGAAAAGTACGCTGATGGTGTCAAATGGGATGAACTGGGATTTGTAATAACTCCAACTGATTTCATGTACACCATGAACTGCTCCGATGGAAATATCTTTTCACAAGGACATCTCATCCCCTATAGGAATATTGAGCTTTGTCCATCTGCTGGAATCTTGAATTATGGACAGGGAATATTGGAAGCTCTTAAGGCCGTGAGAACAGAAGATGGTCGTATTATGCTATTCCGGCCGGAAGAGAATGCTCTAAGAATGAAGATGGGTGCAGAGAGGATGTGCATGCCCTCTCCATCCGTAGAGCAATTTGTTGATGCTGTGAAGCAAACTGTCCTCGCCAATAAGCGTTGGGTACCACCTCCAGGAAAAGGATCACTATATCTTAGGCCTTTGCTCATGGGAAGTGGATCTGTTCTTAGTGTTGGACCGGCACCAGAGTGCACATTCCTGATATATGCTTCTCCGGTTGGTAACTCTTCTCCGGTTGGTAATTACCACAAGGGAAGGACATCCCTGAACCTGTATGTTGAGGATAAACTCCGTAGAGCTACCCCCGGTGGAACTGGAGGGATCAAGTCTATCACCAATTATGCACCAGTTTACCAGGCACAGAAGCAAGCAAGAGCCAAAGGGTTCTCTGATATCTTATACCTGGATTCTGTAACCGGTAAATGTATTGAGGAGATATCTGCTGCTAACATTTTCATTGTCAAGGATAATGTTATTTCCACTCCAGCATTAGTACATGGAACTATTCTGCCCGGAGTTACTCGTTCAAGCATAATGGAGATTGCCCTTGATTTAGGTTATCAGGTGGAGGAGCGTCTAATTCCGCTGGAGGATTTGCTTGAAGCTGATGAAGCCTTCTGCACCGGAACTGCCGTGACTGTCAACCCTGTTGGTTCAGTAACTTATGACACTAAAAGAGTGGAGTACAAAACATGGGAGGGAACAGTATCTCAGAAGCTGTATGAAACGCTAACAGGAATCCAAACTGCTCGTCTCGAGGACAAGAAGGGATGGACCCTGGAGGTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

366

Amino Acids

39.91

Weight (kDa)

5.34

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 86 - 321 1.4e-30 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 2 cut(s) 409, 487
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 1 cut(s) 890
AclWI GGATC 3 cut(s) 436, 472, 635
AcoI YGGCCR 1 cut(s) 290
AfaI GTAC 5 cut(s) 68, 128, 411, 801, 992
AfiI CCNNNNNNNGG 3 cut(s) 209, 419, 425
AflII CTTAAG 1 cut(s) 248
AgeI ACCGGT 1 cut(s) 722
AgsI TTSAA 3 cut(s) 220, 834, 908
AjnI CCWGG 4 cut(s) 418, 660, 708, 1083
AleI CACNNNNGTG 1 cut(s) 493
AluBI AGCT 6 cut(s) 8, 196, 245, 605, 911, 1024
AluI AGCT 6 cut(s) 8, 196, 245, 605, 911, 1024
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 1 cut(s) 1064
Alw44I GTGCAC 1 cut(s) 496
AlwI GGATC 3 cut(s) 436, 472, 635
AlwNI CAGNNNCTG 1 cut(s) 1024
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 3 cut(s) 252, 290, 443
ApaLI GTGCAC 1 cut(s) 496
ApeKI GCWGC 2 cut(s) 5, 749
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
AsiGI ACCGGT 1 cut(s) 722
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 2 cut(s) 482, 1080
AsuC2I CCSGG 2 cut(s) 612, 819
AsuHPI GGTGA 2 cut(s) 71, 631
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 2 cut(s) 482, 1080
BaeGI GKGCMC 1 cut(s) 500
BanI GGYRCC 2 cut(s) 409, 487
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 17, 736
BccI CCATC 8 cut(s) 50, 68, 140, 211, 263, 313, 358, 1071
BceAI ACGGC 2 cut(s) 239, 923
BciT130I CCWGG 4 cut(s) 420, 662, 710, 1085
BcnI CCSGG 2 cut(s) 612, 819
BcoDI GTCTC 1 cut(s) 1064
BfmI CTRYAG 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 6, 750
BlsI GCNGC 2 cut(s) 7, 751
Bme1390I CCNGG 6 cut(s) 420, 612, 662, 710, 819, 1085
Bme18I GGWCC 2 cut(s) 482, 1080
BmeT110I CYCGRG 1 cut(s) 1061
BmgT120I GGNCC 2 cut(s) 482, 1080
BmiI GGNNCC 3 cut(s) 411, 489, 1082
BmrFI CCNGG 6 cut(s) 420, 612, 662, 710, 819, 1085
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 104
BpmI CTGGAG 4 cut(s) 402, 642, 774, 914
BpuMI CCSGG 2 cut(s) 612, 819
BsaJI CCNNGG 2 cut(s) 610, 1083
BsaWI WCCGGW 4 cut(s) 520, 538, 722, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 419, 425
Bse118I RCCGGY 2 cut(s) 484, 722
Bse1I ACTGG 3 cut(s) 99, 625, 653
BseBI CCWGG 4 cut(s) 420, 662, 710, 1085
BseDI CCNNGG 2 cut(s) 610, 1083
BseGI GGATG 6 cut(s) 94, 174, 339, 350, 566, 1082
BseLI CCNNNNNNNGG 3 cut(s) 209, 419, 425
BseMII CTCAG 1 cut(s) 1031
BseNI ACTGG 3 cut(s) 99, 625, 653
BseRI GAGGAG 2 cut(s) 752, 890
BseSI GKGCMC 1 cut(s) 500
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 17, 736
BsgI GTGCAG 2 cut(s) 345, 910
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 254, 292, 445
BshNI GGYRCC 2 cut(s) 409, 487
BshTI ACCGGT 1 cut(s) 722
BsiEI CGRYCG 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 500
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 9 cut(s) 289, 293, 485, 521, 539, 612, 723, 819, 930
BslI CCNNNNNNNGG 3 cut(s) 209, 419, 425
BsmAI GTCTC 1 cut(s) 1064
BsmBI CGTCTC 1 cut(s) 1064
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 3 cut(s) 254, 292, 445
BsoBI CYCGRG 1 cut(s) 1061
Bsp1286I GDGCHC 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 428, 464, 627
BspACI CCGC 1 cut(s) 890
BspANI GGCC 3 cut(s) 254, 292, 445
BspCNI CTCAG 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 411, 489, 1082
BspPI GGATC 3 cut(s) 436, 472, 635
BspT107I GGYRCC 2 cut(s) 409, 487
BspTI CTTAAG 1 cut(s) 248
BsrFI RCCGGY 2 cut(s) 484, 722
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 3 cut(s) 99, 625, 653
BssAI RCCGGY 2 cut(s) 484, 722
BssECI CCNNGG 2 cut(s) 610, 1083
BssMI GATC 3 cut(s) 428, 464, 627
Bst2UI CCWGG 4 cut(s) 420, 662, 710, 1085
Bst4CI ACNGT 4 cut(s) 50, 388, 946, 1012
Bst6I CTCTTC 2 cut(s) 291, 538
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 341, 675
BstDEI CTNAG 4 cut(s) 308, 440, 473, 1017
BstF5I GGATG 6 cut(s) 94, 174, 339, 350, 566, 1082
BstKTI GATC 3 cut(s) 431, 467, 630
BstMAI GTCTC 1 cut(s) 1064
BstMBI GATC 3 cut(s) 428, 464, 627
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 3 cut(s) 251, 289, 917
BstNI CCWGG 4 cut(s) 420, 662, 710, 1085
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 6 cut(s) 418, 610, 660, 708, 817, 1083
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 17, 736
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BstZI CGGCCG 1 cut(s) 290
BsuRI GGCC 3 cut(s) 254, 292, 445
BtsCI GGATG 6 cut(s) 94, 174, 339, 350, 566, 1082
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 341, 675
CaiI CAGNNNCTG 1 cut(s) 1024
Cfr10I RCCGGY 2 cut(s) 484, 722
Cfr13I GGNCC 2 cut(s) 482, 1080
CseI GACGC 1 cut(s) 869
Csp6I GTAC 5 cut(s) 67, 127, 410, 800, 991
CspAI ACCGGT 1 cut(s) 722
CviAII CATG 6 cut(s) 124, 133, 340, 454, 803, 999
CviQI GTAC 5 cut(s) 67, 127, 410, 800, 991
DdeI CTNAG 4 cut(s) 308, 440, 473, 1017
DpnI GATC 3 cut(s) 430, 466, 629
DpnII GATC 3 cut(s) 428, 464, 627
EaeI YGGCCR 1 cut(s) 290
EagI CGGCCG 1 cut(s) 290
Eam1104I CTCTTC 2 cut(s) 291, 538
EarI CTCTTC 2 cut(s) 291, 538
EclXI CGGCCG 1 cut(s) 290
Eco147I AGGCCT 1 cut(s) 445
Eco32I GATATC 2 cut(s) 700, 744
Eco47I GGWCC 2 cut(s) 482, 1080
Eco52I CGGCCG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 1061
EcoRII CCWGG 4 cut(s) 418, 660, 708, 1083
EcoRV GATATC 2 cut(s) 700, 744
Esp3I CGTCTC 1 cut(s) 1064
FaeI CATG 6 cut(s) 127, 136, 343, 457, 806, 1002
FatI CATG 6 cut(s) 123, 132, 339, 453, 802, 998
Fnu4HI GCNGC 2 cut(s) 6, 750
FokI GGATG 6 cut(s) 101, 161, 337, 346, 553, 1089
Fsp4HI GCNGC 2 cut(s) 6, 750
GluI GCNGC 2 cut(s) 6, 750
GsuI CTGGAG 4 cut(s) 402, 642, 774, 914
HaeIII GGCC 3 cut(s) 254, 292, 445
HapII CCGG 9 cut(s) 289, 293, 485, 521, 539, 612, 723, 819, 930
HgaI GACGC 1 cut(s) 869
Hin1II CATG 6 cut(s) 127, 136, 343, 457, 806, 1002
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HinfI GANTC 4 cut(s) 35, 213, 713, 1044
HpaII CCGG 9 cut(s) 289, 293, 485, 521, 539, 612, 723, 819, 930
HphI GGTGA 2 cut(s) 71, 631
Hpy166II GTNNAC 4 cut(s) 129, 498, 658, 949
Hpy188I TCNGA 5 cut(s) 16, 34, 145, 697, 1020
Hpy188III TCNNGA 3 cut(s) 217, 505, 1061
Hpy8I GTNNAC 4 cut(s) 129, 498, 658, 949
HpyAV CCTTC 3 cut(s) 555, 931, 1066
HpyCH4III ACNGT 4 cut(s) 50, 388, 946, 1012
HpyCH4V TGCA 6 cut(s) 22, 326, 339, 498, 650, 927
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 289, 917
HpyF3I CTNAG 4 cut(s) 308, 440, 473, 1017
Hsp92II CATG 6 cut(s) 127, 136, 343, 457, 806, 1002
KpnI GGTACC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 428, 464, 627
LmnI GCTCC 2 cut(s) 146, 877
Lsp1109I GCAGC 2 cut(s) 17, 736
LweI GCATC 1 cut(s) 361
MaeIII GTNAC 5 cut(s) 527, 718, 823, 940, 964
MalI GATC 3 cut(s) 430, 466, 629
MboI GATC 3 cut(s) 428, 464, 627
MboII GAAGA 5 cut(s) 3, 278, 308, 328, 525
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 5 cut(s) 220, 362, 547, 643, 885
MmeI TCCRAC 2 cut(s) 137, 460
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 2 cut(s) 51, 493
MspA1I CMGCKG 1 cut(s) 892
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 9 cut(s) 289, 293, 485, 521, 539, 612, 723, 819, 930
MspR9I CCNGG 6 cut(s) 420, 612, 662, 710, 819, 1085
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 4 cut(s) 420, 662, 710, 1085
MwoI GCNNNNNNNGC 3 cut(s) 251, 289, 917
NciI CCSGG 2 cut(s) 612, 819
NdeII GATC 3 cut(s) 428, 464, 627
NlaIII CATG 6 cut(s) 127, 136, 343, 457, 806, 1002
NlaIV GGNNCC 3 cut(s) 411, 489, 1082
NmuCI GTSAC 1 cut(s) 940
NspI RCATGY 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 493
PaeI GCATGC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 1061
PceI AGGCCT 1 cut(s) 445
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 4 cut(s) 35, 213, 713, 1044
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 418
PinAI ACCGGT 1 cut(s) 722
PkrI GCNGC 2 cut(s) 7, 751
Psp6I CCWGG 4 cut(s) 418, 660, 708, 1083
PspGI CCWGG 4 cut(s) 418, 660, 708, 1083
PspN4I GGNNCC 3 cut(s) 411, 489, 1082
PspPI GGNCC 2 cut(s) 482, 1080
PstNI CAGNNNCTG 1 cut(s) 1024
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 5 cut(s) 68, 128, 411, 801, 992
RsaNI GTAC 5 cut(s) 67, 127, 410, 800, 991
RseI CAYNNNNRTG 2 cut(s) 51, 493
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 6, 750
Sau3AI GATC 3 cut(s) 428, 464, 627
Sau96I GGNCC 2 cut(s) 482, 1080
ScrFI CCNGG 6 cut(s) 420, 612, 662, 710, 819, 1085
SduI GDGCHC 1 cut(s) 500
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 1061
SinI GGWCC 2 cut(s) 482, 1080
SlaI CTCGAG 1 cut(s) 1061
SmiMI CAYNNNNRTG 2 cut(s) 51, 493
SmlI CTYRAG 2 cut(s) 248, 1061
SmoI CTYRAG 2 cut(s) 248, 1061
SphI GCATGC 1 cut(s) 343
Sse9I AATT 5 cut(s) 220, 362, 547, 643, 885
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 1 cut(s) 890
SspI AATATT 2 cut(s) 190, 237
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 6 cut(s) 418, 610, 660, 708, 817, 1083
TaaI ACNGT 4 cut(s) 50, 388, 946, 1012
TaqI TCGA 1 cut(s) 1062
TasI AATT 5 cut(s) 220, 362, 547, 643, 885
TatI WGTACW 3 cut(s) 126, 799, 990
TfiI GAWTC 4 cut(s) 35, 213, 713, 1044
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 940
TseI GCWGC 2 cut(s) 5, 749
Tsp45I GTSAC 1 cut(s) 940
TspDTI ATGAA 7 cut(s) 105, 112, 149, 329, 751, 930, 1044
TspGWI ACGGA 2 cut(s) 343, 587
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 248
VneI GTGCAC 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 482, 1080
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.