Rh6AG039600

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002089
Physical Location & Seq
Reverse (-)
5483480 .. 5494372
10893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG039600.1

Sequence Viewer

Length: 813 bp
ATGTATGCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATTACATGTACACCATGAAATGCTCCGACGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGAAAGGGACTATTCGAAGGTCTTAAGGCGAACAGAACAGAAGATGGTCGTATTCTGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAAGATGGTTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGCTAATGCTGTGAAGCAAACTGTCTTCGCCAACAAGCGTTGGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTCTGTCACTAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTAGCAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACTCCAAAACTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGACATTGCCCTTGATTTTGGTTACCAGGTGGAGGAGCGTGTGATCCCAGTGGACGATTTACTTGCAGCTGATGAAGCTTTTTGCACAAGAACTGCCGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCACACTATGCCAGAAAAGCAATCAGACGACAGAGGAGATCTGTCGTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

270

Amino Acids

29.7

Weight (kDa)

6.23

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 143 - 249 3.1e-23 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AclWI GGATC 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 146, 661
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 2 cut(s) 157, 573
AjnI CCWGG 3 cut(s) 397, 604, 654
AluBI AGCT 5 cut(s) 133, 392, 539, 698, 707
AluI AGCT 5 cut(s) 133, 392, 539, 698, 707
AlwI GGATC 1 cut(s) 667
AoxI GGCC 2 cut(s) 227, 468
ApeKI GCWGC 3 cut(s) 353, 536, 695
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 2 cut(s) 228, 468
AsuHPI GGTGA 1 cut(s) 429
AsuII TTCGAA 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 3 cut(s) 365, 548, 707
BccI CCATC 6 cut(s) 5, 148, 200, 250, 289, 295
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 3 cut(s) 399, 606, 656
BfaI CTAG 1 cut(s) 497
BfoI RGCGCY 1 cut(s) 750
BfrI CTTAAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 796
BisI GCNGC 3 cut(s) 354, 537, 696
BlsI GCNGC 3 cut(s) 355, 538, 697
Bme1390I CCNGG 3 cut(s) 399, 606, 656
BmgT120I GGNCC 2 cut(s) 228, 468
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 3 cut(s) 399, 606, 656
BmrI ACTGGG 2 cut(s) 31, 671
BmsI GCATC 1 cut(s) 633
BmuI ACTGGG 2 cut(s) 31, 671
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 2 cut(s) 429, 627
Bpu14I TTCGAA 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 471, 604, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 661
Bse1I ACTGG 4 cut(s) 26, 412, 514, 677
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 3 cut(s) 399, 606, 656
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 471, 604, 726
BseGI GGATG 2 cut(s) 31, 287
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 146, 661
BseMI GCAATG 1 cut(s) 633
BseNI ACTGG 4 cut(s) 26, 412, 514, 677
BseRI GAGGAG 3 cut(s) 539, 677, 807
BseXI GCAGC 3 cut(s) 365, 548, 707
BshFI GGCC 2 cut(s) 229, 470
BshVI ATCGAT 1 cut(s) 54
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 146, 661
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 229, 470
Bsp119I TTCGAA 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 63
Bsp143I GATC 3 cut(s) 28, 672, 796
BspANI GGCC 2 cut(s) 229, 470
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 63
BsrI ACTGG 4 cut(s) 26, 412, 514, 677
BssECI CCNNGG 3 cut(s) 471, 604, 726
BssMI GATC 3 cut(s) 28, 672, 796
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 399, 606, 656
Bst4CI ACNGT 1 cut(s) 325
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 278, 462
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 726
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 2 cut(s) 31, 287
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 3 cut(s) 31, 675, 799
BstMBI GATC 3 cut(s) 28, 672, 796
BstMWI GCNNNNNNNGC 3 cut(s) 226, 704, 775
BstNI CCWGG 3 cut(s) 399, 606, 656
BstNSI RCATGY 2 cut(s) 64, 280
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 3 cut(s) 397, 604, 654
BstV1I GCAGC 3 cut(s) 365, 548, 707
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 2 cut(s) 229, 470
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 726
BtsCI GGATG 2 cut(s) 31, 287
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 2 cut(s) 278, 462
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 228, 468
ClaI ATCGAT 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 654
Csp6I GTAC 1 cut(s) 64
CviAII CATG 4 cut(s) 61, 70, 277, 590
CviJI RGCY 8 cut(s) 133, 229, 356, 392, 470, 539, 698, 707
CviKI_1 RGCY 8 cut(s) 133, 229, 356, 392, 470, 539, 698, 707
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 30, 674, 798
DpnII GATC 3 cut(s) 28, 672, 796
Eco130I CCWWGG 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 575
Eco91I GGTNACC 1 cut(s) 650
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 3 cut(s) 397, 604, 654
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 4 cut(s) 64, 73, 280, 593
FaiI YATR 9 cut(s) 6, 62, 71, 162, 278, 369, 378, 591, 767
FaqI GGGAC 1 cut(s) 183
FatI CATG 4 cut(s) 60, 69, 276, 589
Fnu4HI GCNGC 3 cut(s) 354, 537, 696
FokI GGATG 2 cut(s) 38, 274
Fsp4HI GCNGC 3 cut(s) 354, 537, 696
FspBI CTAG 1 cut(s) 497
GlaI GCGC 1 cut(s) 748
GluI GCNGC 3 cut(s) 354, 537, 696
GsuI CTGGAG 2 cut(s) 429, 627
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 2 cut(s) 229, 470
HhaI GCGC 1 cut(s) 749
Hin1II CATG 4 cut(s) 64, 73, 280, 593
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 2 cut(s) 46, 500
HphI GGTGA 1 cut(s) 429
Hpy166II GTNNAC 4 cut(s) 66, 445, 682, 736
Hpy188I TCNGA 5 cut(s) 82, 484, 555, 784, 808
Hpy8I GTNNAC 4 cut(s) 66, 445, 682, 736
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 173, 342, 550
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 5 cut(s) 263, 276, 506, 695, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 704, 775
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 4 cut(s) 64, 73, 280, 593
HspAI GCGC 1 cut(s) 747
Kzo9I GATC 3 cut(s) 28, 672, 796
LmnI GCTCC 2 cut(s) 83, 664
Lsp1109I GCAGC 3 cut(s) 365, 548, 707
LweI GCATC 1 cut(s) 633
MabI ACCWGGT 1 cut(s) 654
MaeI CTAG 1 cut(s) 497
MaeIII GTNAC 4 cut(s) 424, 610, 650, 751
MalI GATC 3 cut(s) 30, 674, 798
MboI GATC 3 cut(s) 28, 672, 796
MboII GAAGA 3 cut(s) 215, 265, 319
MflI RGATCY 1 cut(s) 796
MluCI AATT 4 cut(s) 157, 299, 361, 430
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 368, 404, 517, 611, 655, 785
MseI TTAA 3 cut(s) 18, 186, 811
MspA1I CMGCKG 1 cut(s) 698
MspCI CTTAAG 1 cut(s) 185
MspR9I CCNGG 3 cut(s) 399, 606, 656
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 3 cut(s) 399, 606, 656
MwoI GCNNNNNNNGC 3 cut(s) 226, 704, 775
NdeII GATC 3 cut(s) 28, 672, 796
NlaIII CATG 4 cut(s) 64, 73, 280, 593
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 2 cut(s) 64, 280
NspV TTCGAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 280
PciI ACATGT 1 cut(s) 60
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 46, 500
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 3 cut(s) 355, 538, 697
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 397, 604, 654
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 3 cut(s) 397, 604, 654
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 2 cut(s) 228, 468
PsuI RGATCY 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 3 cut(s) 18, 186, 811
SatI GCNGC 3 cut(s) 354, 537, 696
Sau3AI GATC 3 cut(s) 28, 672, 796
Sau96I GGNCC 2 cut(s) 228, 468
ScrFI CCNGG 3 cut(s) 399, 606, 656
SetI ASST 9 cut(s) 135, 184, 394, 415, 442, 541, 660, 700, 709
SexAI ACCWGGT 1 cut(s) 654
SfaNI GCATC 1 cut(s) 633
SfuI TTCGAA 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 280
Sse9I AATT 4 cut(s) 157, 299, 361, 430
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 497
StyD4I CCNGG 3 cut(s) 397, 604, 654
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 54, 177
TasI AATT 4 cut(s) 157, 299, 361, 430
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 2 cut(s) 46, 500
Tru1I TTAA 3 cut(s) 18, 186, 811
Tru9I TTAA 3 cut(s) 18, 186, 811
TscAI CASTG 1 cut(s) 684
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 3 cut(s) 353, 536, 695
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 4 cut(s) 86, 266, 538, 717
TspGWI ACGGA 2 cut(s) 99, 280
TspRI CASTG 1 cut(s) 684
Van91I CCANNNNNTGG 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 185
XceI RCATGY 2 cut(s) 64, 280
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.