Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Forward (+)

63127220 .. 63132053

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGCTTCTTCTGGTTTAACGACAACTTCGGAATCTATCAACCACAGTGATGATGGCGAAAAGTATGCTAATGGTGTCAACTGGGATGAACTGGCATTTGGAATAACTCCAACTGATTCGATGTACACGATGAACTGCTCCGATGGAAACAACTTTTCGCAAGGACATCTCATTCCGTATGGAAATATTGAGCTTTGTCCATCTGCTGGAATTTTGAATTATGGACAGGGAGTACTTGAAGCTCTTAAGGCCGTAAGAACAGAAGATGGTCGTATTATGCTATTCCGACCTGAAGAAAACGCTCTAAGAATGAAGATGGGTGCAGAGAGGATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACTGTCCTCGCCAATAATCGTTGGGTACCACCTCCAGGAAAAGGATCACTATACGTTAGGCCTTTGCTCATGGGAAGTGGATCTGTTCTTAATGTTGGGCCGGCACCAGAGTACACACTCCTGATATATGCTTCTCCAGTTGGTAATTCTTCTCCAGTTGGTAATTACCACAAGGGAAGGGCATCCCTGAACTTGTATGTTGAGGATAAACTCCCCAAAGGGTTCTCTGACGTTTTATACCTAGATTCCGTAACTGGTAAAAACATTGAGAAGATTTCAGCTGCTAACATTTTCATTGTGAAGGATAATGTTATTTCCACTCCAGCATTAGTGCATGGAACTATTCTTCCGGGAATGGAGGAGCGTCTAATTCCGCTGGAGGAGTTGCTTGAAGCTGATGAAGCTTTCTGCACTGGAACTGCTGTAACTGTCAACCCTATTGGTGCAGTAACATATGACACTAAAAGGGTGGAGTACAAAACAGGGGAGGGAACACTATCTCAGAAACTGTATGAAACACTAACGGGAATCCAAACTGGTCGTCTCGAGGACAAGAAGGGATGGACCCTGGAGGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

322

Amino Acids

34.83

Weight (kDa)

4.9

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	86 - 276	1.4e-09	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	409, 487
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	1 cut(s)	758
AclWI	GGATC	2 cut(s)	436, 472
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	5 cut(s)	128, 237, 411, 497, 860
AfiI	CCNNNNNNNGG	3 cut(s)	209, 419, 425
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	220, 242, 776
AjnI	CCWGG	2 cut(s)	418, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AluBI	AGCT	6 cut(s)	8, 196, 245, 665, 779, 788
AluI	AGCT	6 cut(s)	8, 196, 245, 665, 779, 788
Alw26I	GTCTC	1 cut(s)	932
AlwI	GGATC	2 cut(s)	436, 472
AlwNI	CAGNNNCTG	1 cut(s)	892
Ama87I	CYCGRG	1 cut(s)	929
AoxI	GGCC	3 cut(s)	252, 443, 482
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	910, 942
Asp718I	GGTACC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	482, 948
AsuC2I	CCSGG	1 cut(s)	735
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	948
BanI	GGYRCC	2 cut(s)	409, 487
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	8 cut(s)	50, 140, 211, 263, 313, 352, 358, 939
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	2 cut(s)	420, 953
BcnI	CCSGG	1 cut(s)	735
BcoDI	GTCTC	1 cut(s)	932
BfaI	CTAG	1 cut(s)	626
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	420, 735, 953
Bme18I	GGWCC	1 cut(s)	948
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	2 cut(s)	482, 948
BmiI	GGNNCC	3 cut(s)	411, 489, 950
BmrFI	CCNGG	3 cut(s)	420, 735, 953
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	361, 575
BmuI	ACTGGG	1 cut(s)	94
BpmI	CTGGAG	5 cut(s)	402, 504, 522, 690, 782
BpuMI	CCSGG	1 cut(s)	735
BsaJI	CCNNGG	1 cut(s)	951
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 419, 425
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	7 cut(s)	89, 99, 521, 539, 643, 802, 925
BseBI	CCWGG	2 cut(s)	420, 953
BseDI	CCNNGG	1 cut(s)	951
BseGI	GGATG	5 cut(s)	94, 339, 350, 566, 950
BseLI	CCNNNNNNNGG	3 cut(s)	209, 419, 425
BseMII	CTCAG	1 cut(s)	899
BseNI	ACTGG	7 cut(s)	89, 99, 521, 539, 643, 802, 925
BseRI	GAGGAG	2 cut(s)	758, 779
BseXI	GCAGC	1 cut(s)	652
BsgI	GTGCAG	3 cut(s)	345, 778, 849
BshFI	GGCC	3 cut(s)	254, 445, 484
BshNI	GGYRCC	2 cut(s)	409, 487
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	485, 734
BslI	CCNNNNNNNGG	3 cut(s)	209, 419, 425
BsmAI	GTCTC	1 cut(s)	932
BsmBI	CGTCTC	1 cut(s)	932
BsnI	GGCC	3 cut(s)	254, 445, 484
BsoBI	CYCGRG	1 cut(s)	929
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	428, 464
BspACI	CCGC	1 cut(s)	758
BspANI	GGCC	3 cut(s)	254, 445, 484
BspCNI	CTCAG	1 cut(s)	898
BspLI	GGNNCC	3 cut(s)	411, 489, 950
BspPI	GGATC	2 cut(s)	436, 472
BspT107I	GGYRCC	2 cut(s)	409, 487
BspTI	CTTAAG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	7 cut(s)	89, 99, 521, 539, 643, 802, 925
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	951
BssMI	GATC	2 cut(s)	428, 464
Bst2UI	CCWGG	2 cut(s)	420, 953
Bst4CI	ACNGT	4 cut(s)	50, 388, 814, 894
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	341, 486
BstDEI	CTNAG	2 cut(s)	308, 885
BstF5I	GGATG	5 cut(s)	94, 339, 350, 566, 950
BstKTI	GATC	2 cut(s)	431, 467
BstMAI	GTCTC	1 cut(s)	932
BstMBI	GATC	2 cut(s)	428, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 785
BstNI	CCWGG	2 cut(s)	420, 953
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	418, 733, 951
BstV1I	GCAGC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	254, 445, 484
BtsCI	GGATG	5 cut(s)	94, 339, 350, 566, 950
BtsIMutI	CAGTG	2 cut(s)	55, 795
Cac8I	GCNNGC	2 cut(s)	341, 486
CaiI	CAGNNNCTG	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	482, 948
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	5 cut(s)	127, 236, 410, 496, 859
CviAII	CATG	3 cut(s)	340, 454, 719
CviJI	RGCY	9 cut(s)	8, 196, 245, 254, 445, 484, 665, 779, 788
CviKI_1	RGCY	9 cut(s)	8, 196, 245, 254, 445, 484, 665, 779, 788
CviQI	GTAC	5 cut(s)	127, 236, 410, 496, 859
DdeI	CTNAG	2 cut(s)	308, 885
DpnI	GATC	2 cut(s)	430, 466
DpnII	GATC	2 cut(s)	428, 464
Eco147I	AGGCCT	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	948
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	929
EcoRII	CCWGG	2 cut(s)	418, 951
Esp3I	CGTCTC	1 cut(s)	932
FaeI	CATG	3 cut(s)	343, 457, 722
FatI	CATG	3 cut(s)	339, 453, 718
FauNDI	CATATG	1 cut(s)	838
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	5 cut(s)	101, 337, 346, 553, 957
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	666
GsuI	CTGGAG	5 cut(s)	402, 504, 522, 690, 782
HaeIII	GGCC	3 cut(s)	254, 445, 484
HapII	CCGG	2 cut(s)	485, 734
HgaI	GACGC	1 cut(s)	737
Hin1II	CATG	3 cut(s)	343, 457, 722
HincII	GTYRAC	3 cut(s)	82, 817, 961
HindII	GTYRAC	3 cut(s)	82, 817, 961
HindIII	AAGCTT	2 cut(s)	6, 786
HinfI	GANTC	4 cut(s)	35, 119, 629, 912
HpaII	CCGG	2 cut(s)	485, 734
Hpy166II	GTNNAC	5 cut(s)	82, 129, 498, 817, 961
Hpy188I	TCNGA	5 cut(s)	34, 145, 290, 613, 888
Hpy188III	TCNNGA	2 cut(s)	505, 929
Hpy8I	GTNNAC	5 cut(s)	82, 129, 498, 817, 961
HpyAV	CCTTC	3 cut(s)	555, 679, 934
HpyCH4III	ACNGT	4 cut(s)	50, 388, 814, 894
HpyCH4IV	ACGT	2 cut(s)	438, 615
HpyCH4V	TGCA	5 cut(s)	326, 339, 718, 795, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 785
HpyF3I	CTNAG	2 cut(s)	308, 885
HpySE526I	ACGT	2 cut(s)	438, 615
Hsp92II	CATG	3 cut(s)	343, 457, 722
KpnI	GGTACC	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	484
KroNI	GCCGGC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	428, 464
LmnI	GCTCC	2 cut(s)	146, 745
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	2 cut(s)	361, 575
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	2 cut(s)	438, 615
MaeIII	GTNAC	3 cut(s)	634, 808, 832
MalI	GATC	2 cut(s)	430, 466
MboI	GATC	2 cut(s)	428, 464
MboII	GAAGA	7 cut(s)	3, 278, 308, 328, 525, 667, 722
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	6 cut(s)	213, 220, 362, 529, 547, 753
MmeI	TCCRAC	2 cut(s)	137, 313
MnlI	CCTC	9 cut(s)	324, 401, 426, 580, 736, 757, 865, 925, 949
MroNI	GCCGGC	1 cut(s)	484
MseI	TTAA	3 cut(s)	20, 249, 474
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	665, 760
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	485, 734
MspR9I	CCNGG	3 cut(s)	420, 735, 953
MvaI	CCWGG	2 cut(s)	420, 953
MwoI	GCNNNNNNNGC	2 cut(s)	251, 785
NaeI	GCCGGC	1 cut(s)	486
NciI	CCSGG	1 cut(s)	735
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	2 cut(s)	428, 464
NgoMIV	GCCGGC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	343, 457, 722
NlaIV	GGNNCC	3 cut(s)	411, 489, 950
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	486
PfeI	GAWTC	4 cut(s)	35, 119, 629, 912
PflMI	CCANNNNNTGG	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	418, 733
PkrI	GCNGC	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	418, 951
PspGI	CCWGG	2 cut(s)	418, 951
PspN4I	GGNNCC	3 cut(s)	411, 489, 950
PspPI	GGNCC	2 cut(s)	482, 948
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	5 cut(s)	128, 237, 411, 497, 860
RsaNI	GTAC	5 cut(s)	127, 236, 410, 496, 859
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	20, 249, 474
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	2 cut(s)	428, 464
Sau96I	GGNCC	2 cut(s)	482, 948
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	3 cut(s)	420, 735, 953
SfaNI	GCATC	2 cut(s)	361, 575
Sfr274I	CTCGAG	1 cut(s)	929
SinI	GGWCC	1 cut(s)	948
SlaI	CTCGAG	1 cut(s)	929
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	248, 929
SmoI	CTYRAG	2 cut(s)	248, 929
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	6 cut(s)	213, 220, 362, 529, 547, 753
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	758
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	626
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	418, 733, 951
TaaI	ACNGT	4 cut(s)	50, 388, 814, 894
TaiI	ACGT	2 cut(s)	441, 618
TaqI	TCGA	2 cut(s)	122, 930
TasI	AATT	6 cut(s)	213, 220, 362, 529, 547, 753
TatI	WGTACW	4 cut(s)	126, 235, 495, 858
TfiI	GAWTC	4 cut(s)	35, 119, 629, 912
Tru1I	TTAA	3 cut(s)	20, 249, 474
Tru9I	TTAA	3 cut(s)	20, 249, 474
TscAI	CASTG	2 cut(s)	55, 802
TseI	GCWGC	1 cut(s)	665
TspDTI	ATGAA	6 cut(s)	105, 149, 329, 667, 798, 912
TspGWI	ACGGA	3 cut(s)	168, 343, 622
TspRI	CASTG	2 cut(s)	55, 802
Van91I	CCANNNNNTGG	1 cut(s)	209
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	948
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	929
XspI	CTAG	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.