Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002089

Physical Location & Seq

Genomic Coordinates Forward (+)

71281321 .. 71282935

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0525300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAGCCTGATTTCGAGGTCTGGGGGGCAATGTTTGAGCCCAAAAGTAATTTTGGCAATATCCTTTAGTGGATCTAGCACAGCGGGCCGATACCTGCGGCCCAAAAATAAGCCTACTGGGGTTTGGGTTACAGCTTCGCCCATTCCGAAATCCATGAGGAAAACGAAACCTTATTGGACGATTACAAAGCCTCCCCGGAGCAAACCTTCAACCTTGTTGAAACCCGGTGACCGTGCGCCAGTCCTAGTCTCTCCAAGAGCCGACTGTCAGCATCACCAGACCAACCCGGCGACCGTACTTCCAGTCCCAGTCTCCCAGCGAGCTGACTGCGAGCGCAACCGCCACCGTTACTACCAGCGAAGCAAGGTCTGCAATACTAAGTATCGATTCGGTGACGCGAAGAGATCACACCCAAAGTCCTTATCCGTAAGGCAGAAAGTCCTTATCCGTAAGGCTAGAGAAGAACCTTGTGGCAAGGTTGGTGCACTCCTCGTCCACAAACGCTTGAAGAAGAAGTCAGGTCAAGGGACTACCCCGATGACTGCACCCCACGGTGCTGGCACGCCTGCGCACACGCTCAAAAGAGACAGTTTGCAAGCCAACTGGTTTTGGAGCCAAACAGCCACAGCAAACGCCAGCAACAACACCGATGCAGAAAACACTGTAGAATTCAAGTTCGCCTATGTCGAGAGTAAGAGCAGCACATGGAGTACTAGTCATTCATGGATGGCGGGAGTGAGTGTAACGGCCTCGTTCAAAATTCCATTCATTGGAGGCACCGAGGTCACTGCTACTGCTGAGTATTCCGGATCCTATGAGTGGGGAGAAACTATCACAACCGAAAATACATTGGAGACCACCTACTCGGTTGTCGTGCTGCCAAGAACTTCTATATCTGTGAGCCTCGTAGCCACCAAGGGTTCTTGTGACGTTCCTTATTCCTACTATCAGAGGGATGTGCTCTACAATGGAAAGACCGTCGTGTACAAGAAGGATGACGGTCTGTACACGGGGATCAACTCGTACAATTTCCGTTACGAGGCAACGACCTTAACTCAGGCCAGATCTGATACTCCTGCCACGCTGGTGCAGAAGCTTCCCGACCCATTGACTGACCCGTCCATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

376

Amino Acids

41.51

Weight (kDa)

9.83

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aerolysin	PF01117	206 - 315	8.5e-07	Aerolysin toxin
ETX_MTX2	PF03318	210 - 315	1.6e-06	Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50090 AT1G50110 AT1G50110
fragaria_vesca	FvH4_2g02760 FvH4_2g02870 FvH4_2g02870
malus_domestica	MD05G1110500.v1.1 MD10G1114000.v1.1
prunus_persica	Prupe.8G155300_v2.0.a1 Prupe.8G155500_v2.0.a1
pyrus_communis	pycom05g10650
rosa_chinensis	RchiOBHm_Chr6g0247221 RchiOBHm_Chr6g0247281 RchiOBHm_Chr6g0247341
rosa_laevigata	RLG00000015207 RLG00000015210
rosa_multiflora	Rmu_sc0000745.1_g000026 Rmu_sc0003226.1_g000006 Rmu_sc0004368.1_g000005 Rmu_sc0004368.1_g000016
rosa_roxburghii	Rroxscaffold_180G00433530 Rroxscaffold_180G00433590 Rroxscaffold_7G00214080 Rroxscaffold_7G00214230
rosa_rugosa	Rorug05G0524400 Rorug05G0524700 Rorug05G0524700 Rorug05G0524800 Rorug05G0524900 Rorug05G0525000 Rorug05G0525100 Rorug05G0525200 Rorug05G0525300
rosa_samantha	Rh6AG038600 Rh6AG039200 Rh6AG039600 Rh6AG040300 Rh6CG034300 Rh6CG034700 Rh6DG031900 Rh6DG032500
rosa_wichuraiana	Rw6G003320 Rw6G003390 Rw6G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1117
Acc16I	TGCGCA	1 cut(s)	570
Acc36I	ACCTGC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	776
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccII	CGCG	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	4 cut(s)	83, 97, 340, 731
AclWI	GGATC	4 cut(s)	79, 804, 817, 1022
AcsI	RAATTY	2 cut(s)	668, 759
AfaI	GTAC	5 cut(s)	297, 712, 986, 1007, 1025
AfiI	CCNNNNNNNGG	3 cut(s)	770, 819, 1039
AgsI	TTSAA	5 cut(s)	210, 220, 508, 673, 757
AhlI	ACTAGT	1 cut(s)	713
AleI	CACNNNNGTG	1 cut(s)	1085
AluBI	AGCT	3 cut(s)	134, 323, 1096
AluI	AGCT	3 cut(s)	134, 323, 1096
Alw21I	GWGCWC	2 cut(s)	487, 963
Alw26I	GTCTC	4 cut(s)	253, 316, 579, 848
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	4 cut(s)	79, 804, 817, 1022
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	4 cut(s)	85, 98, 747, 1059
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	699, 877
ApoI	RAATTY	2 cut(s)	668, 759
AspLEI	GCGC	3 cut(s)	238, 336, 571
AspS9I	GGNCC	2 cut(s)	85, 99
AsuC2I	CCSGG	3 cut(s)	196, 225, 287
AsuHPI	GGTGA	3 cut(s)	239, 266, 404
BaeGI	GKGCMC	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	487, 963
BbvI	GCAGC	2 cut(s)	711, 864
BccI	CCATC	1 cut(s)	721
BceAI	ACGGC	1 cut(s)	762
BcgI	CGANNNNNNTGC	4 cut(s)	309, 343, 770, 804
BcnI	CCSGG	3 cut(s)	196, 225, 287
BcoDI	GTCTC	4 cut(s)	253, 316, 579, 848
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	4 cut(s)	75, 245, 456, 714
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	1064
BisI	GCNGC	3 cut(s)	98, 700, 878
BlsI	GCNGC	3 cut(s)	99, 701, 879
BmcAI	AGTACT	1 cut(s)	712
Bme1390I	CCNGG	3 cut(s)	196, 225, 287
BmgT120I	GGNCC	2 cut(s)	85, 99
BmiI	GGNNCC	3 cut(s)	614, 778, 811
BmrFI	CCNGG	3 cut(s)	196, 225, 287
BmrI	ACTGGG	2 cut(s)	126, 302
BmsI	GCATC	2 cut(s)	280, 640
BmuI	ACTGGG	2 cut(s)	126, 302
BpuMI	CCSGG	3 cut(s)	196, 225, 287
Bsa29I	ATCGAT	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	4 cut(s)	194, 550, 780, 915
BsaWI	WCCGGW	1 cut(s)	806
BsaXI	ACNNNNNCTCC	6 cut(s)	175, 205, 700, 726, 730, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	770, 819, 1039
Bse1I	ACTGG	5 cut(s)	121, 239, 302, 308, 608
Bse3DI	GCAATG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	4 cut(s)	194, 550, 780, 915
BseGI	GGATG	3 cut(s)	732, 961, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	770, 819, 1039
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	789, 1070
BseNI	ACTGG	5 cut(s)	121, 239, 302, 308, 608
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	711, 864
BseYI	CCCAGC	1 cut(s)	315
BsgI	GTGCAG	2 cut(s)	528, 1109
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	4 cut(s)	87, 100, 749, 1061
BshNI	GGYRCC	1 cut(s)	776
BshVI	ATCGAT	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	487, 963
BsiSI	CCGG	4 cut(s)	196, 225, 287, 807
BslFI	GGGAC	2 cut(s)	290, 541
BslI	CCNNNNNNNGG	3 cut(s)	770, 819, 1039
BsmAI	GTCTC	4 cut(s)	253, 316, 579, 848
BsmFI	GGGAC	2 cut(s)	290, 541
BsnI	GGCC	4 cut(s)	87, 100, 749, 1061
Bso31I	GGTCTC	1 cut(s)	848
Bsp1286I	GDGCHC	3 cut(s)	41, 487, 963
Bsp13I	TCCGGA	1 cut(s)	806
Bsp1407I	TGTACA	2 cut(s)	984, 1005
Bsp143I	GATC	5 cut(s)	71, 404, 809, 1014, 1064
BspACI	CCGC	4 cut(s)	83, 97, 340, 731
BspANI	GGCC	4 cut(s)	87, 100, 749, 1061
BspCNI	CTCAG	2 cut(s)	790, 1069
BspDI	ATCGAT	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	806
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	3 cut(s)	614, 778, 811
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	4 cut(s)	79, 804, 817, 1022
BspT107I	GGYRCC	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	35
BsrGI	TGTACA	2 cut(s)	984, 1005
BsrI	ACTGG	5 cut(s)	121, 239, 302, 308, 608
BssECI	CCNNGG	4 cut(s)	194, 550, 780, 915
BssMI	GATC	5 cut(s)	71, 404, 809, 1014, 1064
BssT1I	CCWWGG	1 cut(s)	915
Bst4CI	ACNGT	9 cut(s)	233, 266, 295, 347, 554, 590, 664, 979, 1001
Bst6I	CTCTTC	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstAUI	TGTACA	2 cut(s)	984, 1005
BstC8I	GCNNGC	8 cut(s)	85, 321, 332, 559, 563, 567, 597, 637
BstDEI	CTNAG	3 cut(s)	378, 798, 1056
BstDSI	CCRYGG	1 cut(s)	550
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	3 cut(s)	732, 961, 1000
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	3 cut(s)	238, 336, 571
BstKTI	GATC	5 cut(s)	74, 407, 812, 1017, 1067
BstMAI	GTCTC	4 cut(s)	253, 316, 579, 848
BstMBI	GATC	5 cut(s)	71, 404, 809, 1014, 1064
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 369
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	3 cut(s)	194, 223, 285
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	711, 864
BstX2I	RGATCY	3 cut(s)	71, 809, 1064
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	3 cut(s)	71, 809, 1064
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	87, 100, 749, 1061
BsuTUI	ATCGAT	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	732, 961, 1000
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	660, 786
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	8 cut(s)	85, 321, 332, 559, 563, 567, 597, 637
CfoI	GCGC	3 cut(s)	238, 336, 571
Cfr13I	GGNCC	2 cut(s)	85, 99
ClaI	ATCGAT	1 cut(s)	385
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	5 cut(s)	296, 711, 985, 1006, 1024
CviAII	CATG	3 cut(s)	154, 705, 723
CviQI	GTAC	5 cut(s)	296, 711, 985, 1006, 1024
DdeI	CTNAG	3 cut(s)	378, 798, 1056
DpnI	GATC	5 cut(s)	73, 406, 811, 1016, 1066
DpnII	GATC	5 cut(s)	71, 404, 809, 1014, 1064
DrdI	GACNNNNNNGTC	1 cut(s)	1117
DseDI	GACNNNNNNGTC	1 cut(s)	1117
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	915
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	915
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	3 cut(s)	157, 708, 726
FaiI	YATR	7 cut(s)	155, 684, 706, 724, 816, 893, 1124
FaqI	GGGAC	2 cut(s)	290, 541
FatI	CATG	3 cut(s)	153, 704, 722
FauI	CCCGC	2 cut(s)	76, 724
Fnu4HI	GCNGC	3 cut(s)	98, 700, 878
FokI	GGATG	3 cut(s)	739, 968, 1007
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	98, 700, 878
FspBI	CTAG	4 cut(s)	75, 245, 456, 714
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	3 cut(s)	237, 335, 570
GluI	GCNGC	3 cut(s)	98, 700, 878
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	4 cut(s)	87, 100, 749, 1061
HapII	CCGG	4 cut(s)	196, 225, 287, 807
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	3 cut(s)	238, 336, 571
Hin1II	CATG	3 cut(s)	157, 708, 726
Hin6I	GCGC	3 cut(s)	236, 334, 569
HinP1I	GCGC	3 cut(s)	236, 334, 569
HindIII	AAGCTT	1 cut(s)	1094
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	4 cut(s)	196, 225, 287, 807
HphI	GGTGA	3 cut(s)	239, 266, 404
Hpy166II	GTNNAC	4 cut(s)	485, 496, 985, 1008
Hpy188I	TCNGA	3 cut(s)	147, 951, 1069
Hpy188III	TCNNGA	3 cut(s)	688, 807, 1100
Hpy8I	GTNNAC	4 cut(s)	485, 496, 985, 1008
Hpy99I	CGWCG	1 cut(s)	983
HpyAV	CCTTC	2 cut(s)	216, 985
HpyCH4III	ACNGT	9 cut(s)	233, 266, 295, 347, 554, 590, 664, 979, 1001
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	6 cut(s)	372, 485, 545, 595, 653, 1090
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 369
HpyF3I	CTNAG	3 cut(s)	378, 798, 1056
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	3 cut(s)	157, 708, 726
HspAI	GCGC	3 cut(s)	236, 334, 569
Kpn2I	TCCGGA	1 cut(s)	806
Kzo9I	GATC	5 cut(s)	71, 404, 809, 1014, 1064
LmnI	GCTCC	2 cut(s)	198, 612
Lsp1109I	GCAGC	2 cut(s)	711, 864
LweI	GCATC	2 cut(s)	280, 640
MaeI	CTAG	4 cut(s)	75, 245, 456, 714
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	8 cut(s)	127, 227, 347, 392, 742, 784, 926, 1034
MalI	GATC	5 cut(s)	73, 406, 811, 1016, 1066
MboI	GATC	5 cut(s)	71, 404, 809, 1014, 1064
MboII	GAAGA	4 cut(s)	412, 473, 520, 523
MflI	RGATCY	3 cut(s)	71, 809, 1064
MhlI	GDGCHC	3 cut(s)	41, 487, 963
MluCI	AATT	4 cut(s)	48, 668, 759, 1027
MroI	TCCGGA	1 cut(s)	806
MseI	TTAA	1 cut(s)	1052
MslI	CAYNNNNRTG	1 cut(s)	1085
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	4 cut(s)	196, 225, 287, 807
MspR9I	CCNGG	3 cut(s)	196, 225, 287
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	84, 369
NciI	CCSGG	3 cut(s)	196, 225, 287
NdeII	GATC	5 cut(s)	71, 404, 809, 1014, 1064
NlaIII	CATG	3 cut(s)	157, 708, 726
NlaIV	GGNNCC	3 cut(s)	614, 778, 811
NmuCI	GTSAC	4 cut(s)	227, 392, 784, 926
NsbI	TGCGCA	1 cut(s)	570
OliI	CACNNNNGTG	1 cut(s)	1085
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 684
PfeI	GAWTC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	99, 701, 879
PspEI	GGTNACC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	614, 778, 811
PspPI	GGNCC	2 cut(s)	85, 99
PsuI	RGATCY	3 cut(s)	71, 809, 1064
RsaI	GTAC	5 cut(s)	297, 712, 986, 1007, 1025
RsaNI	GTAC	5 cut(s)	296, 711, 985, 1006, 1024
RseI	CAYNNNNRTG	1 cut(s)	1085
SaqAI	TTAA	1 cut(s)	1052
SatI	GCNGC	3 cut(s)	98, 700, 878
Sau3AI	GATC	5 cut(s)	71, 404, 809, 1014, 1064
Sau96I	GGNCC	2 cut(s)	85, 99
ScaI	AGTACT	1 cut(s)	712
ScrFI	CCNGG	3 cut(s)	196, 225, 287
SduI	GDGCHC	3 cut(s)	41, 487, 963
SfaNI	GCATC	2 cut(s)	280, 640
SfcI	CTRYAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	4 cut(s)	48, 668, 759, 1027
SsiI	CCGC	4 cut(s)	83, 97, 340, 731
SspMI	CTAG	4 cut(s)	75, 245, 456, 714
StyD4I	CCNGG	3 cut(s)	194, 223, 285
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	9 cut(s)	233, 266, 295, 347, 554, 590, 664, 979, 1001
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	3 cut(s)	14, 385, 687
TasI	AATT	4 cut(s)	48, 668, 759, 1027
TatI	WGTACW	3 cut(s)	710, 984, 1005
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	1 cut(s)	1052
Tru9I	TTAA	1 cut(s)	1052
TscAI	CASTG	2 cut(s)	667, 793
TseFI	GTSAC	4 cut(s)	227, 392, 784, 926
TseI	GCWGC	2 cut(s)	699, 877
Tsp45I	GTSAC	4 cut(s)	227, 392, 784, 926
TspDTI	ATGAA	2 cut(s)	711, 757
TspGWI	ACGGA	3 cut(s)	415, 437, 1022
TspRI	CASTG	2 cut(s)	667, 793
Van91I	CCANNNNNTGG	1 cut(s)	770
VneI	GTGCAC	1 cut(s)	483
XapI	RAATTY	2 cut(s)	668, 759
XspI	CTAG	4 cut(s)	75, 245, 456, 714
ZrmI	AGTACT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.