RchiOBHm_Chr6g0247281

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002089
Physical Location & Seq
Reverse (-)
3135895 .. 3138392
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22166

Sequence Viewer

Length: 1050 bp
ATGAGACCTCACCCGTCATGTCTGAAAAAAGGTGAAATTTATGCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATCACATGTACACCATGAAATGCTCCGACGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGACAGGGACTATTCGAAGGTCTTAAGGCGACCAGAACAGAAGATGGTCGTATTATGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGATTATGGGTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACAGTCTTCGCCAACAAGCGTTGGGTACCACCTCCAGGAAAAGGATCATTGTATATTAGGCCTTTGCTCGTGGGGAGTGGATCTAATCTGTGCTTGGGGCCGGGACTGGAGTATACATTCCTAATTTTTGCTTCTCCAGTTGGTAATTATCACAAGGGAAGGGCAGCCCTAAATTTGTATGTTGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTGTGTCACCAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTACTAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACTCCAACACTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGATATTGCCCTTGATTTTGGTTACCAGGTGGCGGAGCGTGTGATCCCAGTGGAGGATTTACTTGCAGCCGATGAAGCTTTCTGCACAGGAACTGCCGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCAAGACAAGAGGGTTGAATACAAAACCGGAGGAGCGTTATGTCAGAAACTGTATGAAACGCTAACAGGAATCCAAACTGGTCGTCTTGAGGACAAGAAGGGATGGACCTTAGAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

349

Amino Acids

38.15

Weight (kDa)

8.04

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 69 - 305 2.5e-29 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 382
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 470
AciI CCGC 1 cut(s) 830
AclWI GGATC 3 cut(s) 409, 445, 835
AcsI RAATTY 2 cut(s) 36, 529
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 3 cut(s) 101, 384, 702
AfiI CCNNNNNNNGG 5 cut(s) 182, 392, 398, 829, 850
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 193, 741, 944
AjnI CCWGG 4 cut(s) 391, 565, 772, 822
AluBI AGCT 4 cut(s) 169, 560, 707, 875
AluI AGCT 4 cut(s) 169, 560, 707, 875
AlwI GGATC 3 cut(s) 409, 445, 835
AlwNI CAGNNNCTG 2 cut(s) 890, 976
AoxI GGCC 4 cut(s) 263, 416, 455, 636
ApeKI GCWGC 2 cut(s) 521, 863
ApoI RAATTY 2 cut(s) 36, 529
ArsI GACNNNNNNTTYG 2 cut(s) 994, 1026
Asp718I GGTACC 1 cut(s) 382
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 4 cut(s) 264, 455, 636, 1032
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 3 cut(s) 44, 586, 597
AsuII TTCGAA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 382
BauI CACGAG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 533, 875
BccI CCATC 6 cut(s) 41, 184, 236, 325, 331, 1023
BceAI ACGGC 1 cut(s) 878
BciT130I CCWGG 4 cut(s) 393, 567, 774, 824
BcnI CCSGG 1 cut(s) 459
BfaI CTAG 2 cut(s) 665, 704
BfoI RGCGCY 1 cut(s) 918
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 2 cut(s) 522, 864
BlsI GCNGC 2 cut(s) 523, 865
Bme1390I CCNGG 5 cut(s) 393, 459, 567, 774, 824
Bme18I GGWCC 1 cut(s) 1032
BmgT120I GGNCC 4 cut(s) 264, 455, 636, 1032
BmiI GGNNCC 3 cut(s) 266, 384, 456
BmrFI CCNGG 5 cut(s) 393, 459, 567, 774, 824
BmrI ACTGGG 2 cut(s) 67, 839
BmsI GCATC 2 cut(s) 334, 801
BmuI ACTGGG 2 cut(s) 67, 839
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 5 cut(s) 375, 477, 485, 597, 795
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 639, 772, 894
BsaWI WCCGGW 1 cut(s) 953
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 392, 398, 829, 850
Bse1I ACTGG 7 cut(s) 62, 468, 494, 580, 682, 845, 1009
Bse8I GATNNNNATC 1 cut(s) 86
BseBI CCWGG 4 cut(s) 393, 567, 774, 824
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 639, 772, 894
BseGI GGATG 3 cut(s) 67, 323, 1034
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 5 cut(s) 182, 392, 398, 829, 850
BseNI ACTGG 7 cut(s) 62, 468, 494, 580, 682, 845, 1009
BseRI GAGGAG 2 cut(s) 707, 972
BseXI GCAGC 2 cut(s) 533, 875
BsgI GTGCAG 2 cut(s) 318, 865
BshFI GGCC 4 cut(s) 265, 418, 457, 638
BshNI GGYRCC 1 cut(s) 382
BshVI ATCGAT 1 cut(s) 90
BsiSI CCGG 2 cut(s) 458, 954
BslFI GGGAC 2 cut(s) 219, 474
BslI CCNNNNNNNGG 5 cut(s) 182, 392, 398, 829, 850
BsmFI GGGAC 2 cut(s) 219, 474
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 4 cut(s) 265, 418, 457, 638
Bsp119I TTCGAA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 5 cut(s) 64, 91, 401, 437, 840
BspACI CCGC 1 cut(s) 830
BspANI GGCC 4 cut(s) 265, 418, 457, 638
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 266, 384, 456
BspPI GGATC 3 cut(s) 409, 445, 835
BspT104I TTCGAA 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 382
BspTI CTTAAG 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 7 cut(s) 62, 468, 494, 580, 682, 845, 1009
BssECI CCNNGG 3 cut(s) 639, 772, 894
BssMI GATC 5 cut(s) 64, 91, 401, 437, 840
BssNAI GTATAC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 425
BssT1I CCWWGG 1 cut(s) 639
Bst1107I GTATAC 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 4 cut(s) 393, 567, 774, 824
Bst4CI ACNGT 2 cut(s) 361, 978
BstAFI CTTAAG 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 314, 630
BstDEI CTNAG 2 cut(s) 281, 1036
BstDSI CCRYGG 1 cut(s) 894
BstEII GGTNACC 1 cut(s) 818
BstF5I GGATG 3 cut(s) 67, 323, 1034
BstH2I RGCGCY 1 cut(s) 918
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 5 cut(s) 67, 94, 404, 440, 843
BstMBI GATC 5 cut(s) 64, 91, 401, 437, 840
BstMWI GCNNNNNNNGC 2 cut(s) 262, 872
BstNI CCWGG 4 cut(s) 393, 567, 774, 824
BstNSI RCATGY 2 cut(s) 100, 316
BstPI GGTNACC 1 cut(s) 818
BstSCI CCNGG 5 cut(s) 391, 457, 565, 772, 822
BstV1I GCAGC 2 cut(s) 533, 875
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BstZ17I GTATAC 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 4 cut(s) 265, 418, 457, 638
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 3 cut(s) 67, 323, 1034
BtsIMutI CAGTG 2 cut(s) 749, 852
Cac8I GCNNGC 2 cut(s) 314, 630
CaiI CAGNNNCTG 2 cut(s) 890, 976
CfoI GCGC 1 cut(s) 917
Cfr13I GGNCC 4 cut(s) 264, 455, 636, 1032
ClaI ATCGAT 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 822
Csp6I GTAC 3 cut(s) 100, 383, 701
CviAII CATG 5 cut(s) 18, 97, 106, 313, 758
CviQI GTAC 3 cut(s) 100, 383, 701
DdeI CTNAG 2 cut(s) 281, 1036
DpnI GATC 5 cut(s) 66, 93, 403, 439, 842
DpnII GATC 5 cut(s) 64, 91, 401, 437, 840
EciI GGCGGA 1 cut(s) 845
Eco130I CCWWGG 1 cut(s) 639
Eco147I AGGCCT 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 1032
Eco57I CTGAAG 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 818
EcoO65I GGTNACC 1 cut(s) 818
EcoRII CCWGG 4 cut(s) 391, 565, 772, 822
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 5 cut(s) 21, 100, 109, 316, 761
FaqI GGGAC 2 cut(s) 219, 474
FatI CATG 5 cut(s) 17, 96, 105, 312, 757
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 2 cut(s) 522, 864
FokI GGATG 3 cut(s) 74, 310, 1041
Fsp4HI GCNGC 2 cut(s) 522, 864
FspBI CTAG 2 cut(s) 665, 704
GlaI GCGC 1 cut(s) 916
GluI GCNGC 2 cut(s) 522, 864
GsuI CTGGAG 5 cut(s) 375, 477, 485, 597, 795
HaeII RGCGCY 1 cut(s) 918
HaeIII GGCC 4 cut(s) 265, 418, 457, 638
HapII CCGG 2 cut(s) 458, 954
HhaI GCGC 1 cut(s) 917
Hin1II CATG 5 cut(s) 21, 100, 109, 316, 761
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HincII GTYRAC 2 cut(s) 904, 1045
HindII GTYRAC 2 cut(s) 904, 1045
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 3 cut(s) 82, 668, 996
HpaII CCGG 2 cut(s) 458, 954
HphI GGTGA 3 cut(s) 44, 586, 597
Hpy166II GTNNAC 5 cut(s) 102, 471, 613, 904, 1045
Hpy188I TCNGA 5 cut(s) 24, 118, 652, 723, 972
Hpy188III TCNNGA 2 cut(s) 929, 1013
Hpy8I GTNNAC 5 cut(s) 102, 471, 613, 904, 1045
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 209, 510, 718, 1018
HpyCH4III ACNGT 2 cut(s) 361, 978
HpyCH4V TGCA 5 cut(s) 299, 312, 674, 863, 882
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 872
HpyF3I CTNAG 2 cut(s) 281, 1036
Hsp92II CATG 5 cut(s) 21, 100, 109, 316, 761
HspAI GCGC 1 cut(s) 915
KpnI GGTACC 1 cut(s) 386
Kzo9I GATC 5 cut(s) 64, 91, 401, 437, 840
LmnI GCTCC 3 cut(s) 119, 832, 959
Lsp1109I GCAGC 2 cut(s) 533, 875
LweI GCATC 2 cut(s) 334, 801
MabI ACCWGGT 1 cut(s) 822
MaeI CTAG 2 cut(s) 665, 704
MaeIII GTNAC 4 cut(s) 592, 778, 818, 919
MalI GATC 5 cut(s) 66, 93, 403, 439, 842
MboI GATC 5 cut(s) 64, 91, 401, 437, 840
MboII GAAGA 2 cut(s) 251, 355
MflI RGATCY 1 cut(s) 437
MluCI AATT 7 cut(s) 36, 193, 335, 480, 502, 529, 598
MmeI TCCRAC 2 cut(s) 141, 770
MseI TTAA 2 cut(s) 54, 222
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 2 cut(s) 458, 954
MspR9I CCNGG 5 cut(s) 393, 459, 567, 774, 824
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 4 cut(s) 393, 567, 774, 824
MwoI GCNNNNNNNGC 2 cut(s) 262, 872
NciI CCSGG 1 cut(s) 459
NdeII GATC 5 cut(s) 64, 91, 401, 437, 840
NlaIII CATG 5 cut(s) 21, 100, 109, 316, 761
NlaIV GGNNCC 3 cut(s) 266, 384, 456
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 2 cut(s) 100, 316
NspV TTCGAA 1 cut(s) 213
PaeI GCATGC 1 cut(s) 316
PceI AGGCCT 1 cut(s) 418
PciI ACATGT 1 cut(s) 96
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 3 cut(s) 82, 668, 996
PflMI CCANNNNNTGG 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 2 cut(s) 523, 865
PscI ACATGT 1 cut(s) 96
Psp6I CCWGG 4 cut(s) 391, 565, 772, 822
PspEI GGTNACC 1 cut(s) 818
PspGI CCWGG 4 cut(s) 391, 565, 772, 822
PspN4I GGNNCC 3 cut(s) 266, 384, 456
PspPI GGNCC 4 cut(s) 264, 455, 636, 1032
PstNI CAGNNNCTG 2 cut(s) 890, 976
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 3 cut(s) 101, 384, 702
RsaNI GTAC 3 cut(s) 100, 383, 701
SaqAI TTAA 2 cut(s) 54, 222
SatI GCNGC 2 cut(s) 522, 864
Sau3AI GATC 5 cut(s) 64, 91, 401, 437, 840
Sau96I GGNCC 4 cut(s) 264, 455, 636, 1032
ScrFI CCNGG 5 cut(s) 393, 459, 567, 774, 824
SexAI ACCWGGT 1 cut(s) 822
SfaNI GCATC 2 cut(s) 334, 801
SfuI TTCGAA 1 cut(s) 213
SinI GGWCC 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 221, 1013
SmoI CTYRAG 2 cut(s) 221, 1013
SphI GCATGC 1 cut(s) 316
Sse9I AATT 7 cut(s) 36, 193, 335, 480, 502, 529, 598
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 1 cut(s) 830
SspI AATATT 1 cut(s) 189
SspMI CTAG 2 cut(s) 665, 704
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 5 cut(s) 391, 457, 565, 772, 822
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 2 cut(s) 361, 978
TaqI TCGA 2 cut(s) 90, 213
TasI AATT 7 cut(s) 36, 193, 335, 480, 502, 529, 598
TatI WGTACW 2 cut(s) 99, 700
TfiI GAWTC 3 cut(s) 82, 668, 996
Tru1I TTAA 2 cut(s) 54, 222
Tru9I TTAA 2 cut(s) 54, 222
TscAI CASTG 2 cut(s) 756, 852
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 521, 863
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 4 cut(s) 122, 706, 885, 996
TspGWI ACGGA 2 cut(s) 135, 316
TspRI CASTG 2 cut(s) 756, 852
Van91I CCANNNNNTGG 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 1032
XapI RAATTY 2 cut(s) 36, 529
XceI RCATGY 2 cut(s) 100, 316
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 2 cut(s) 665, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.