Rw6G003320

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002089
Physical Location & Seq
Reverse (-)
5264818 .. 5267329
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003320.1

Sequence Viewer

Length: 1098 bp
ATGGAAGCTTCTTCAGGTTTAACGACAACTTCGGAATCTATCAACCACAGTGATGATGGCGAAAAGTATGCTAATGGTGTCAACTGGGATGAACTGGCATTTGGAATAACTCCAACTGATTCGATGTACACCATGAACTGCTCCGATGAAAATAACTTTTCACAAGGACATCTCATTCCCTATGGAAATATTGAGCTTTGTCCATCTGCTGGAATTTTGAATTATGGACAGGGAGTACTTGAAGCTCTTAAGGCGGTAAGAACAGAAGATGGTCGTATTATGCTATTCCGACCAGAAGAAAATGCTCTAAGAATGAAGATGGGTGCAGAGAGGATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACTGTCCTCGCCAATAAGCGTTGGGTACCACCTCCAGGAAAAGGATCACTATACGTCAGGCCTTTGCTCATGGGAAGTGGATCTGTTCTTAATGTTGGGCCGGCACCAGAGTACACACTCCTGATATATGCGTCTCCGGTTGGTAATTCTTCTCCAGTTGGTAATTACCACAAGGGAAGGCCATCCCTGAACTTGTATGTTGAGGATAAACTCCCTAGAGCTACTCCCGGTGGAACTGGAGGGATAAAGTCTATCACCAATTACGCACCCGTTTATCAGGCACAAAAGCAAGCAAGAGCCAAAGGATTCTCTGATGTTTTATACCTAGATTCTGTAACTGGTAAAAACATTGAGGAGATTTCAGCTGCTAACATTTTCATTGTGAAGGATAATGTTGTATCCACTCCAGCATTAGTACATGGAACTATTCTTCCCGGAGTTACTCGTAAAAGCATAATGGAGATTGCCCTTCATTTAGGTTACCAGATGGAGGAGCGTCTAATTCCGCTAGAGGATTTGCTTGAAGCTGATGAAGCTTTCTGCACCGGAACTGCTGTAACTGTCAACCCTATTGGTGCAGTAACTTATGACACTAAAAGGGTGGAGTACAAAACAGGGGAGGGAACAGTATCTCAGAAACTGTATGAAACACTAACAGGAATCCAAACTGGTTGTCTCGAGGACAAGAAGGGATGGACCCTGGAGGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

365

Amino Acids

39.58

Weight (kDa)

5.15

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 86 - 320 3.6e-31 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 2 cut(s) 409, 487
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 2 cut(s) 254, 890
AclWI GGATC 2 cut(s) 436, 472
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 6 cut(s) 128, 237, 411, 497, 801, 992
AfiI CCNNNNNNNGG 4 cut(s) 209, 419, 425, 874
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 220, 242, 908
AjnI CCWGG 2 cut(s) 418, 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 2 cut(s) 799, 831
AluBI AGCT 7 cut(s) 8, 196, 245, 605, 749, 911, 920
AluI AGCT 7 cut(s) 8, 196, 245, 605, 749, 911, 920
Alw26I GTCTC 2 cut(s) 522, 1064
AlwI GGATC 2 cut(s) 436, 472
AlwNI CAGNNNCTG 1 cut(s) 1024
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 3 cut(s) 443, 482, 563
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 2 cut(s) 482, 1080
AsuC2I CCSGG 2 cut(s) 612, 819
AsuHPI GGTGA 1 cut(s) 631
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 1 cut(s) 1080
BanI GGYRCC 2 cut(s) 409, 487
BbvI GCAGC 1 cut(s) 736
BccI CCATC 9 cut(s) 50, 211, 263, 313, 352, 358, 574, 865, 1071
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 420, 1085
BciVI GTATCC 1 cut(s) 793
BcnI CCSGG 2 cut(s) 612, 819
BcoDI GTCTC 2 cut(s) 522, 1064
BfaI CTAG 3 cut(s) 600, 710, 893
BfrI CTTAAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 751
BmcAI AGTACT 1 cut(s) 237
Bme1390I CCNGG 4 cut(s) 420, 612, 819, 1085
Bme18I GGWCC 1 cut(s) 1080
BmeT110I CYCGRG 1 cut(s) 1061
BmgT120I GGNCC 2 cut(s) 482, 1080
BmiI GGNNCC 3 cut(s) 411, 489, 1082
BmrFI CCNGG 4 cut(s) 420, 612, 819, 1085
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 94
BpmI CTGGAG 4 cut(s) 402, 522, 642, 774
BpuMI CCSGG 2 cut(s) 612, 819
BsaJI CCNNGG 1 cut(s) 1083
BsaWI WCCGGW 2 cut(s) 520, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 419, 425, 874
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 6 cut(s) 89, 99, 539, 625, 727, 1057
BseBI CCWGG 2 cut(s) 420, 1085
BseDI CCNNGG 1 cut(s) 1083
BseGI GGATG 5 cut(s) 94, 339, 350, 566, 1082
BseLI CCNNNNNNNGG 4 cut(s) 209, 419, 425, 874
BseMII CTCAG 1 cut(s) 1031
BseNI ACTGG 6 cut(s) 89, 99, 539, 625, 727, 1057
BseRI GAGGAG 2 cut(s) 752, 890
BseXI GCAGC 1 cut(s) 736
BsgI GTGCAG 3 cut(s) 345, 910, 981
BshFI GGCC 3 cut(s) 445, 484, 565
BshNI GGYRCC 2 cut(s) 409, 487
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 5 cut(s) 485, 521, 612, 819, 930
BslI CCNNNNNNNGG 4 cut(s) 209, 419, 425, 874
BsmAI GTCTC 2 cut(s) 522, 1064
BsmBI CGTCTC 1 cut(s) 522
BsnI GGCC 3 cut(s) 445, 484, 565
BsoBI CYCGRG 1 cut(s) 1061
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 428, 464
BspACI CCGC 2 cut(s) 254, 890
BspANI GGCC 3 cut(s) 445, 484, 565
BspCNI CTCAG 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 411, 489, 1082
BspPI GGATC 2 cut(s) 436, 472
BspT107I GGYRCC 2 cut(s) 409, 487
BspTI CTTAAG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 6 cut(s) 89, 99, 539, 625, 727, 1057
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 1083
BssMI GATC 2 cut(s) 428, 464
Bst2UI CCWGG 2 cut(s) 420, 1085
Bst4CI ACNGT 5 cut(s) 50, 388, 946, 1012, 1026
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 341, 486, 675
BstDEI CTNAG 2 cut(s) 308, 1017
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 5 cut(s) 94, 339, 350, 566, 1082
BstKTI GATC 2 cut(s) 431, 467
BstMAI GTCTC 2 cut(s) 522, 1064
BstMBI GATC 2 cut(s) 428, 464
BstMWI GCNNNNNNNGC 2 cut(s) 251, 917
BstNI CCWGG 2 cut(s) 420, 1085
BstNSI RCATGY 1 cut(s) 343
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 4 cut(s) 418, 610, 817, 1083
BstV1I GCAGC 1 cut(s) 736
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 3 cut(s) 445, 484, 565
BtsCI GGATG 5 cut(s) 94, 339, 350, 566, 1082
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 341, 486, 675
CaiI CAGNNNCTG 1 cut(s) 1024
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 482, 1080
CseI GACGC 2 cut(s) 504, 869
Csp6I GTAC 6 cut(s) 127, 236, 410, 496, 800, 991
CviAII CATG 4 cut(s) 133, 340, 454, 803
CviQI GTAC 6 cut(s) 127, 236, 410, 496, 800, 991
DdeI CTNAG 2 cut(s) 308, 1017
DpnI GATC 2 cut(s) 430, 466
DpnII GATC 2 cut(s) 428, 464
Eco147I AGGCCT 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 1061
Eco91I GGTNACC 1 cut(s) 863
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 418, 1083
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 4 cut(s) 136, 343, 457, 806
FatI CATG 4 cut(s) 132, 339, 453, 802
Fnu4HI GCNGC 1 cut(s) 750
FokI GGATG 5 cut(s) 101, 337, 346, 553, 1089
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 3 cut(s) 600, 710, 893
GluI GCNGC 1 cut(s) 750
GsuI CTGGAG 4 cut(s) 402, 522, 642, 774
HaeIII GGCC 3 cut(s) 445, 484, 565
HapII CCGG 5 cut(s) 485, 521, 612, 819, 930
HgaI GACGC 2 cut(s) 504, 869
Hin1II CATG 4 cut(s) 136, 343, 457, 806
HincII GTYRAC 3 cut(s) 82, 949, 1093
HindII GTYRAC 3 cut(s) 82, 949, 1093
HindIII AAGCTT 2 cut(s) 6, 918
HinfI GANTC 5 cut(s) 35, 119, 690, 713, 1044
HpaII CCGG 5 cut(s) 485, 521, 612, 819, 930
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 5 cut(s) 82, 129, 498, 949, 1093
Hpy188I TCNGA 5 cut(s) 34, 145, 290, 697, 1020
Hpy188III TCNNGA 2 cut(s) 505, 1061
Hpy8I GTNNAC 5 cut(s) 82, 129, 498, 949, 1093
HpyAV CCTTC 4 cut(s) 555, 763, 863, 1066
HpyCH4III ACNGT 5 cut(s) 50, 388, 946, 1012, 1026
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 4 cut(s) 326, 339, 927, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 917
HpyF3I CTNAG 2 cut(s) 308, 1017
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 4 cut(s) 136, 343, 457, 806
KpnI GGTACC 1 cut(s) 413
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Kzo9I GATC 2 cut(s) 428, 464
LmnI GCTCC 2 cut(s) 146, 877
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 361
MaeI CTAG 3 cut(s) 600, 710, 893
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 5 cut(s) 718, 823, 863, 940, 964
MalI GATC 2 cut(s) 430, 466
MboI GATC 2 cut(s) 428, 464
MboII GAAGA 6 cut(s) 3, 278, 308, 328, 525, 806
MflI RGATCY 1 cut(s) 464
MluCI AATT 7 cut(s) 213, 220, 362, 529, 547, 643, 885
MmeI TCCRAC 2 cut(s) 137, 313
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 3 cut(s) 20, 249, 474
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 749
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 5 cut(s) 485, 521, 612, 819, 930
MspR9I CCNGG 4 cut(s) 420, 612, 819, 1085
MvaI CCWGG 2 cut(s) 420, 1085
MwoI GCNNNNNNNGC 2 cut(s) 251, 917
NaeI GCCGGC 1 cut(s) 486
NciI CCSGG 2 cut(s) 612, 819
NdeII GATC 2 cut(s) 428, 464
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 4 cut(s) 136, 343, 457, 806
NlaIV GGNNCC 3 cut(s) 411, 489, 1082
NspI RCATGY 1 cut(s) 343
PaeI GCATGC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 1061
PceI AGGCCT 1 cut(s) 445
PdiI GCCGGC 1 cut(s) 486
PfeI GAWTC 5 cut(s) 35, 119, 690, 713, 1044
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 2 cut(s) 418, 817
PkrI GCNGC 1 cut(s) 751
Psp6I CCWGG 2 cut(s) 418, 1083
PspEI GGTNACC 1 cut(s) 863
PspGI CCWGG 2 cut(s) 418, 1083
PspN4I GGNNCC 3 cut(s) 411, 489, 1082
PspPI GGNCC 2 cut(s) 482, 1080
PstNI CAGNNNCTG 1 cut(s) 1024
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 6 cut(s) 128, 237, 411, 497, 801, 992
RsaNI GTAC 6 cut(s) 127, 236, 410, 496, 800, 991
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 20, 249, 474
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 2 cut(s) 428, 464
Sau96I GGNCC 2 cut(s) 482, 1080
ScaI AGTACT 1 cut(s) 237
ScrFI CCNGG 4 cut(s) 420, 612, 819, 1085
SfaNI GCATC 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 1061
SinI GGWCC 1 cut(s) 1080
SlaI CTCGAG 1 cut(s) 1061
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 248, 1061
SmoI CTYRAG 2 cut(s) 248, 1061
SphI GCATGC 1 cut(s) 343
Sse9I AATT 7 cut(s) 213, 220, 362, 529, 547, 643, 885
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 254, 890
SspI AATATT 1 cut(s) 190
SspMI CTAG 3 cut(s) 600, 710, 893
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 4 cut(s) 418, 610, 817, 1083
TaaI ACNGT 5 cut(s) 50, 388, 946, 1012, 1026
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 122, 1062
TasI AATT 7 cut(s) 213, 220, 362, 529, 547, 643, 885
TatI WGTACW 5 cut(s) 126, 235, 495, 799, 990
TfiI GAWTC 5 cut(s) 35, 119, 690, 713, 1044
Tru1I TTAA 3 cut(s) 20, 249, 474
Tru9I TTAA 3 cut(s) 20, 249, 474
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 749
TspDTI ATGAA 8 cut(s) 105, 149, 162, 329, 751, 845, 930, 1044
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 1080
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 1061
XspI CTAG 3 cut(s) 600, 710, 893
ZrmI AGTACT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.