RchiOBHm_Chr6g0247341

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002089
Physical Location & Seq
Reverse (-)
3206971 .. 3209700
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22172

Sequence Viewer

Length: 1104 bp
ATGATCGACACACTAAGAATTCCAGCTATGTCTTCTTCAGCTTTGCAAACAACTGGTGAATCTAACAACCACAGTCTGAAAAACGGTGAAATGTATGCTGATGGCATTAACTGGGATGATCTTGGGTTTGGACTGATTCCAATCGATTACATGTACACCATGAAATGCTCCGACGGAGAAAACTTTTCACAAGGACATCTCTCTCCCTTTGGAAAGATTGAGCTTTGCCCATCTGCTGGAATATTGAATTATGGACAGGGACTATTCGAAGGTCTTAAGGCGACCAGAACAGAAGATGGTCGTATTATGCTGTTTCGGCCCCAAGAGAATGCTCTAAGAATGAAGATGGGTGCAGAGAGAATGTGCATGCCATCTCCATCCGTTGAGCAATTTGTTGATGCTGTGAAGCAAACAGTCTTCGCCAACAAGCGTTGGGTACCACCTCCAGGAAAAGGATCACTGTATATTAGGCCTTTGCTCGTGGGGAGTGGATCTAATCTGGGCTTGGGCCCGGGGCTGGAGTATACATTCCTAATATTTGCTTCTCCAGTTGGTAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACAGAGCTACTCCTGGTGGAACTGGAGGTGTCAAGTCCGTCACCAATTACTCACCTGTTTACCAAACACAACAGCAAGCAAGGGCCAAGGGGTTCTCTGATGTCTTATTCCTAGATTCTGCAACTGGTAAAAACATTGAGGAGATTGTAGCAGCTAACATTTTCATTCTGAAGGGTAATGTCATTTCAACACCAACACTGAAACATGGAACTATCCTCCCTGGAGTAACCCGTAAAAGCATCATTGACATTGCCCTTGATTTTGGTTACCAGGTGGAGGAGCGTGTGATCCCAGTGGAGGATTTACTTGCAGCCGATGAAGCTTTCTGCACAGGAACTGCAGTGGTTGTCAACCCTATTGGCGCTGTAACTTATCAAGACAAGAGGGTTGAATACAAAACAGGAGGAGCATTATGTCAGAAACTGTATGAAACGCTAACAGGAATCCAAACAGGTCGTCTTGAGGACAAGAAGGGATGGACCCTAGAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

367

Amino Acids

39.98

Weight (kDa)

6.61

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 87 - 323 5e-32 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 524
AclWI GGATC 3 cut(s) 463, 499, 889
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 2 cut(s) 21, 797
AfaI GTAC 2 cut(s) 155, 438
AfiI CCNNNNNNNGG 6 cut(s) 236, 446, 452, 517, 883, 904
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 247, 795, 998
AjnI CCWGG 4 cut(s) 445, 619, 826, 876
AluBI AGCT 6 cut(s) 26, 41, 223, 614, 761, 929
AluI AGCT 6 cut(s) 26, 41, 223, 614, 761, 929
AlwI GGATC 3 cut(s) 463, 499, 889
AlwNI CAGNNNCTG 2 cut(s) 944, 1030
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 4 cut(s) 317, 470, 508, 690
ApaI GGGCCC 1 cut(s) 512
ApeKI GCWGC 3 cut(s) 575, 758, 917
ApoI RAATTY 1 cut(s) 18
ArsI GACNNNNNNTTYG 2 cut(s) 1048, 1080
Asp718I GGTACC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 971
AspS9I GGNCC 5 cut(s) 318, 508, 509, 690, 1086
AsuC2I CCSGG 2 cut(s) 512, 513
AsuHPI GGTGA 4 cut(s) 68, 98, 640, 651
AsuII TTCGAA 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 1 cut(s) 1086
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 24, 409
BbvI GCAGC 3 cut(s) 587, 770, 929
BccI CCATC 7 cut(s) 95, 238, 290, 340, 379, 385, 1077
BciT130I CCWGG 4 cut(s) 447, 621, 828, 878
BcnI CCSGG 2 cut(s) 512, 513
BfaI CTAG 2 cut(s) 719, 1091
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 972
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 3 cut(s) 576, 759, 918
BlsI GCNGC 3 cut(s) 577, 760, 919
Bme1390I CCNGG 6 cut(s) 447, 512, 513, 621, 828, 878
Bme18I GGWCC 1 cut(s) 1086
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 5 cut(s) 318, 508, 509, 690, 1086
BmiI GGNNCC 4 cut(s) 320, 438, 510, 1088
BmrFI CCNGG 6 cut(s) 447, 512, 513, 621, 828, 878
BmrI ACTGGG 2 cut(s) 121, 893
BmsI GCATC 2 cut(s) 388, 855
BmuI ACTGGG 2 cut(s) 121, 893
BpiI GAAGAC 2 cut(s) 24, 409
BpmI CTGGAG 5 cut(s) 429, 531, 539, 651, 849
Bpu14I TTCGAA 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 1088
BpuMI CCSGG 2 cut(s) 512, 513
Bsa29I ATCGAT 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 4 cut(s) 511, 512, 693, 826
Bsc4I CCNNNNNNNGG 6 cut(s) 236, 446, 452, 517, 883, 904
Bse1I ACTGG 6 cut(s) 58, 116, 548, 634, 736, 899
Bse3DI GCAATG 1 cut(s) 855
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 4 cut(s) 447, 621, 828, 878
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 4 cut(s) 511, 512, 693, 826
BseGI GGATG 3 cut(s) 121, 377, 1088
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 6 cut(s) 236, 446, 452, 517, 883, 904
BseMI GCAATG 1 cut(s) 855
BseNI ACTGG 6 cut(s) 58, 116, 548, 634, 736, 899
BseRI GAGGAG 3 cut(s) 761, 899, 1026
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 3 cut(s) 587, 770, 929
BsgI GTGCAG 2 cut(s) 372, 919
BshFI GGCC 4 cut(s) 319, 472, 510, 692
BshNI GGYRCC 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 6 cut(s) 236, 446, 452, 517, 883, 904
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 4 cut(s) 319, 472, 510, 692
BsoBI CYCGRG 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 267
Bsp120I GGGCCC 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 512
Bsp1407I TGTACA 1 cut(s) 153
Bsp143I GATC 5 cut(s) 3, 118, 455, 491, 894
BspANI GGCC 4 cut(s) 319, 472, 510, 692
BspDI ATCGAT 1 cut(s) 144
BspLI GGNNCC 4 cut(s) 320, 438, 510, 1088
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 3 cut(s) 463, 499, 889
BspT104I TTCGAA 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 436
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 855
BsrGI TGTACA 1 cut(s) 153
BsrI ACTGG 6 cut(s) 58, 116, 548, 634, 736, 899
BssECI CCNNGG 4 cut(s) 511, 512, 693, 826
BssMI GATC 5 cut(s) 3, 118, 455, 491, 894
BssNAI GTATAC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 693
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 4 cut(s) 447, 621, 828, 878
Bst4CI ACNGT 5 cut(s) 74, 86, 415, 462, 1032
BstAFI CTTAAG 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 368, 684
BstDEI CTNAG 2 cut(s) 14, 335
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 3 cut(s) 121, 377, 1088
BstH2I RGCGCY 1 cut(s) 972
BstHHI GCGC 1 cut(s) 971
BstKTI GATC 5 cut(s) 6, 121, 458, 494, 897
BstMBI GATC 5 cut(s) 3, 118, 455, 491, 894
BstMWI GCNNNNNNNGC 2 cut(s) 316, 926
BstNI CCWGG 4 cut(s) 447, 621, 828, 878
BstNSI RCATGY 2 cut(s) 154, 370
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 6 cut(s) 445, 510, 511, 619, 826, 876
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 587, 770, 929
BstV2I GAAGAC 2 cut(s) 24, 409
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BstZ17I GTATAC 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 4 cut(s) 319, 472, 510, 692
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 3 cut(s) 121, 377, 1088
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 4 cut(s) 458, 803, 906, 954
Cac8I GCNNGC 2 cut(s) 368, 684
CaiI CAGNNNCTG 2 cut(s) 944, 1030
CfoI GCGC 1 cut(s) 971
Cfr13I GGNCC 5 cut(s) 318, 508, 509, 690, 1086
Cfr9I CCCGGG 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 144
CsiI ACCWGGT 1 cut(s) 876
Csp6I GTAC 2 cut(s) 154, 437
CviAII CATG 4 cut(s) 151, 160, 367, 812
CviQI GTAC 2 cut(s) 154, 437
DdeI CTNAG 2 cut(s) 14, 335
DpnI GATC 5 cut(s) 5, 120, 457, 493, 896
DpnII GATC 5 cut(s) 3, 118, 455, 491, 894
Eco130I CCWWGG 1 cut(s) 693
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 1086
Eco57I CTGAAG 2 cut(s) 21, 797
Eco88I CYCGRG 1 cut(s) 511
Eco91I GGTNACC 1 cut(s) 872
EcoO65I GGTNACC 1 cut(s) 872
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 4 cut(s) 445, 619, 826, 876
EcoT14I CCWWGG 1 cut(s) 693
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 4 cut(s) 154, 163, 370, 815
FaqI GGGAC 1 cut(s) 273
FatI CATG 4 cut(s) 150, 159, 366, 811
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 3 cut(s) 576, 759, 918
FokI GGATG 3 cut(s) 128, 364, 1095
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 3 cut(s) 576, 759, 918
FspBI CTAG 2 cut(s) 719, 1091
GlaI GCGC 1 cut(s) 970
GluI GCNGC 3 cut(s) 576, 759, 918
GsuI CTGGAG 5 cut(s) 429, 531, 539, 651, 849
HaeII RGCGCY 1 cut(s) 972
HaeIII GGCC 4 cut(s) 319, 472, 510, 692
HapII CCGG 1 cut(s) 512
HhaI GCGC 1 cut(s) 971
Hin1II CATG 4 cut(s) 154, 163, 370, 815
Hin6I GCGC 1 cut(s) 969
HinP1I GCGC 1 cut(s) 969
HincII GTYRAC 2 cut(s) 958, 1099
HindII GTYRAC 2 cut(s) 958, 1099
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 4 cut(s) 59, 136, 722, 1050
HpaII CCGG 1 cut(s) 512
HphI GGTGA 4 cut(s) 68, 98, 640, 651
Hpy166II GTNNAC 5 cut(s) 156, 525, 667, 958, 1099
Hpy188I TCNGA 5 cut(s) 78, 172, 706, 777, 1026
Hpy188III TCNNGA 2 cut(s) 983, 1067
Hpy8I GTNNAC 5 cut(s) 156, 525, 667, 958, 1099
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 263, 564, 772, 1072
HpyCH4III ACNGT 5 cut(s) 74, 86, 415, 462, 1032
HpyCH4V TGCA 7 cut(s) 46, 353, 366, 728, 917, 936, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 926
HpyF3I CTNAG 2 cut(s) 14, 335
Hsp92II CATG 4 cut(s) 154, 163, 370, 815
HspAI GCGC 1 cut(s) 969
KpnI GGTACC 1 cut(s) 440
Kzo9I GATC 5 cut(s) 3, 118, 455, 491, 894
LmnI GCTCC 3 cut(s) 173, 886, 1013
Lsp1109I GCAGC 3 cut(s) 587, 770, 929
LweI GCATC 2 cut(s) 388, 855
MabI ACCWGGT 1 cut(s) 876
MaeI CTAG 2 cut(s) 719, 1091
MaeIII GTNAC 4 cut(s) 646, 832, 872, 973
MalI GATC 5 cut(s) 5, 120, 457, 493, 896
MboI GATC 5 cut(s) 3, 118, 455, 491, 894
MboII GAAGA 5 cut(s) 24, 27, 305, 355, 409
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 6 cut(s) 18, 247, 389, 556, 583, 652
MmeI TCCRAC 1 cut(s) 195
MseI TTAA 2 cut(s) 108, 276
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 6 cut(s) 447, 512, 513, 621, 828, 878
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 4 cut(s) 447, 621, 828, 878
MwoI GCNNNNNNNGC 2 cut(s) 316, 926
NciI CCSGG 2 cut(s) 512, 513
NdeII GATC 5 cut(s) 3, 118, 455, 491, 894
NlaIII CATG 4 cut(s) 154, 163, 370, 815
NlaIV GGNNCC 4 cut(s) 320, 438, 510, 1088
NmuCI GTSAC 1 cut(s) 646
NspI RCATGY 2 cut(s) 154, 370
NspV TTCGAA 1 cut(s) 267
PaeI GCATGC 1 cut(s) 370
PceI AGGCCT 1 cut(s) 472
PciI ACATGT 1 cut(s) 150
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 4 cut(s) 59, 136, 722, 1050
PflMI CCANNNNNTGG 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 3 cut(s) 577, 760, 919
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 4 cut(s) 445, 619, 826, 876
PspEI GGTNACC 1 cut(s) 872
PspGI CCWGG 4 cut(s) 445, 619, 826, 876
PspN4I GGNNCC 4 cut(s) 320, 438, 510, 1088
PspOMI GGGCCC 1 cut(s) 508
PspPI GGNCC 5 cut(s) 318, 508, 509, 690, 1086
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 2 cut(s) 944, 1030
PsuI RGATCY 1 cut(s) 491
RsaI GTAC 2 cut(s) 155, 438
RsaNI GTAC 2 cut(s) 154, 437
SaqAI TTAA 2 cut(s) 108, 276
SatI GCNGC 3 cut(s) 576, 759, 918
Sau3AI GATC 5 cut(s) 3, 118, 455, 491, 894
Sau96I GGNCC 5 cut(s) 318, 508, 509, 690, 1086
ScrFI CCNGG 6 cut(s) 447, 512, 513, 621, 828, 878
SduI GDGCHC 1 cut(s) 512
SexAI ACCWGGT 1 cut(s) 876
SfaNI GCATC 2 cut(s) 388, 855
SfcI CTRYAG 1 cut(s) 945
SfuI TTCGAA 1 cut(s) 267
SinI GGWCC 1 cut(s) 1086
SmaI CCCGGG 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 275, 1067
SmoI CTYRAG 2 cut(s) 275, 1067
SphI GCATGC 1 cut(s) 370
Sse9I AATT 6 cut(s) 18, 247, 389, 556, 583, 652
SseBI AGGCCT 1 cut(s) 472
SspI AATATT 2 cut(s) 243, 537
SspMI CTAG 2 cut(s) 719, 1091
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 6 cut(s) 445, 510, 511, 619, 826, 876
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 5 cut(s) 74, 86, 415, 462, 1032
TaqI TCGA 3 cut(s) 6, 144, 267
TasI AATT 6 cut(s) 18, 247, 389, 556, 583, 652
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 4 cut(s) 59, 136, 722, 1050
Tru1I TTAA 2 cut(s) 108, 276
Tru9I TTAA 2 cut(s) 108, 276
TscAI CASTG 4 cut(s) 465, 810, 906, 954
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 3 cut(s) 575, 758, 917
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 5 cut(s) 176, 356, 760, 939, 1050
TspGWI ACGGA 3 cut(s) 189, 370, 634
TspMI CCCGGG 1 cut(s) 511
TspRI CASTG 4 cut(s) 465, 810, 906, 954
Van91I CCANNNNNTGG 1 cut(s) 236
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 1086
XapI RAATTY 1 cut(s) 18
XceI RCATGY 2 cut(s) 154, 370
XmaI CCCGGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 524
XspI CTAG 2 cut(s) 719, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.