Rh6AG038600

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002089
Physical Location & Seq
Reverse (-)
5329580 .. 5331982
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG038600.1

Sequence Viewer

Length: 963 bp
ATGGAAGCTTCTTCAGGTTTAACGACAACTTCGGAATCTATGAACCACAGTGATGATGGCGAAAAGTATGCTAATGGTGTCAACTGGGATGAACTGGCATTTGGAATAACTCCAACTGATTCGATGTACACGATGAACTGCTCCGATGGAAACAACTTTTCGCAAGGACATCTCATTCCGTATGGAAATATTGAGCTTTGTCCATCTGCTGGAATTTTGAATTATGGACAGGGAGTACTTGAAGCTCTTAAGGCGGTAAGAACAGAAGATGGTCGTATTATGCTATTCCGACCGGAAGAAAATGCTCTAAGAATGAAGATATATGGGTGCAGAGAGGATGTGCATGCCATCTCCATCCAGTACACACTCCTGATATATGCTTCTCCAGTCGGTAATTCTTCTCCAGTTGGTAATTACCACAAGGGAAGGGCATCCCTGAACTTGTATGTTGAGGATAAACTCCGTAGAGCTACTTCCGGTGGAACTGGAGGGATAAAGTCTATCACCAATTACGCACCTGTTTACCAGGCACAAAAGCAAGCAAGAGCCAAAGGATTCTCTGCTGTTTTATACCTAGATTCTGTAACTGGTAAAAACATTGAGGAGATTTCAGCTGCTAACATTTTCATTGTGAAGGATAATGTTATTTCCACTCCAGCATTAGTGCATGGAACTATTCTTCCCGGAGTTACTCGTAAAAGCATAATGGAGATTGCCCTTGATTTAGGTTACCAGATGGAGAAGCGTCTAATTCCGCTGGAGGAGTTGCTTGAAGCTGATGAAGCTTTCTGCACTGGAACTGCTGTAACTGTCAACCCTATTGGTGCAGTAACATATGACACTAAAAGGGTGGAGTACAAAACAGGGGAGGGAACACTATCTCAGAAACTGTATGAAACACTAACAGGAATCCAAACTGGTCGTCTCGAGGACAAGAAGGGATGGACCCTGGAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

320

Amino Acids

34.9

Weight (kDa)

5.28

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 116 - 275 1.2e-23 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 2 cut(s) 254, 755
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 4 cut(s) 128, 237, 362, 857
AfiI CCNNNNNNNGG 1 cut(s) 209
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 220, 242, 773
AjnI CCWGG 2 cut(s) 525, 948
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 2 cut(s) 664, 696
AluBI AGCT 7 cut(s) 8, 196, 245, 470, 614, 776, 785
AluI AGCT 7 cut(s) 8, 196, 245, 470, 614, 776, 785
Alw26I GTCTC 1 cut(s) 929
AlwNI CAGNNNCTG 1 cut(s) 889
Ama87I CYCGRG 1 cut(s) 926
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 907, 939
AspS9I GGNCC 1 cut(s) 945
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 1 cut(s) 945
BarI GAAGNNNNNNTAC 2 cut(s) 457, 489
BbvI GCAGC 1 cut(s) 601
BccI CCATC 8 cut(s) 50, 140, 211, 263, 356, 362, 730, 936
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 527, 950
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 1 cut(s) 929
BfaI CTAG 1 cut(s) 575
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
BmcAI AGTACT 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 527, 684, 950
Bme18I GGWCC 1 cut(s) 945
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 945
BmiI GGNNCC 1 cut(s) 947
BmrFI CCNGG 3 cut(s) 527, 684, 950
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 94
BpmI CTGGAG 5 cut(s) 369, 387, 507, 639, 779
BpuMI CCSGG 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 948
BsaWI WCCGGW 2 cut(s) 292, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 9 cut(s) 89, 99, 358, 386, 404, 490, 592, 799, 922
BseBI CCWGG 2 cut(s) 527, 950
BseDI CCNNGG 1 cut(s) 948
BseGI GGATG 5 cut(s) 94, 343, 354, 431, 947
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 896
BseNI ACTGG 9 cut(s) 89, 99, 358, 386, 404, 490, 592, 799, 922
BseRI GAGGAG 2 cut(s) 617, 776
BseXI GCAGC 1 cut(s) 601
BsgI GTGCAG 3 cut(s) 349, 775, 846
Bsh1285I CGRYCG 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 3 cut(s) 293, 477, 684
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 929
BsmBI CGTCTC 1 cut(s) 929
BsoBI CYCGRG 1 cut(s) 926
Bsp1407I TGTACA 1 cut(s) 126
BspACI CCGC 2 cut(s) 254, 755
BspCNI CTCAG 1 cut(s) 895
BspLI GGNNCC 1 cut(s) 947
BspTI CTTAAG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 9 cut(s) 89, 99, 358, 386, 404, 490, 592, 799, 922
BssECI CCNNGG 1 cut(s) 948
Bst2UI CCWGG 2 cut(s) 527, 950
Bst4CI ACNGT 3 cut(s) 50, 811, 891
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 345, 540
BstDEI CTNAG 2 cut(s) 308, 882
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 5 cut(s) 94, 343, 354, 431, 947
BstMAI GTCTC 1 cut(s) 929
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 2 cut(s) 251, 782
BstNI CCWGG 2 cut(s) 527, 950
BstNSI RCATGY 1 cut(s) 347
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 3 cut(s) 525, 682, 948
BstV1I GCAGC 1 cut(s) 601
BtsCI GGATG 5 cut(s) 94, 343, 354, 431, 947
BtsIMutI CAGTG 2 cut(s) 55, 792
Cac8I GCNNGC 2 cut(s) 345, 540
CaiI CAGNNNCTG 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 945
CseI GACGC 1 cut(s) 734
Csp6I GTAC 4 cut(s) 127, 236, 361, 856
CviAII CATG 2 cut(s) 344, 668
CviJI RGCY 8 cut(s) 8, 196, 245, 470, 548, 614, 776, 785
CviKI_1 RGCY 8 cut(s) 8, 196, 245, 470, 548, 614, 776, 785
CviQI GTAC 4 cut(s) 127, 236, 361, 856
DdeI CTNAG 2 cut(s) 308, 882
Eco47I GGWCC 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 926
Eco91I GGTNACC 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 525, 948
Esp3I CGTCTC 1 cut(s) 929
FaeI CATG 2 cut(s) 347, 671
FatI CATG 2 cut(s) 343, 667
FauNDI CATATG 1 cut(s) 835
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 5 cut(s) 101, 341, 350, 418, 954
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 1 cut(s) 575
GluI GCNGC 1 cut(s) 615
GsuI CTGGAG 5 cut(s) 369, 387, 507, 639, 779
HapII CCGG 3 cut(s) 293, 477, 684
HgaI GACGC 1 cut(s) 734
Hin1II CATG 2 cut(s) 347, 671
HincII GTYRAC 3 cut(s) 82, 814, 958
HindII GTYRAC 3 cut(s) 82, 814, 958
HindIII AAGCTT 2 cut(s) 6, 783
HinfI GANTC 5 cut(s) 35, 119, 555, 578, 909
HpaII CCGG 3 cut(s) 293, 477, 684
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 6 cut(s) 82, 129, 363, 523, 814, 958
Hpy188I TCNGA 4 cut(s) 34, 145, 290, 885
Hpy188III TCNNGA 2 cut(s) 370, 926
Hpy8I GTNNAC 6 cut(s) 82, 129, 363, 523, 814, 958
HpyAV CCTTC 3 cut(s) 420, 628, 931
HpyCH4III ACNGT 3 cut(s) 50, 811, 891
HpyCH4V TGCA 5 cut(s) 330, 343, 667, 792, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 782
HpyF3I CTNAG 2 cut(s) 308, 882
Hsp92II CATG 2 cut(s) 347, 671
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 601
LweI GCATC 1 cut(s) 440
MaeI CTAG 1 cut(s) 575
MaeIII GTNAC 5 cut(s) 583, 688, 728, 805, 829
MboII GAAGA 6 cut(s) 3, 278, 308, 328, 390, 671
MluCI AATT 6 cut(s) 213, 220, 394, 412, 508, 750
MmeI TCCRAC 2 cut(s) 137, 313
MnlI CCTC 8 cut(s) 328, 445, 482, 595, 754, 862, 922, 946
MseI TTAA 2 cut(s) 20, 249
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 614, 757
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 3 cut(s) 293, 477, 684
MspR9I CCNGG 3 cut(s) 527, 684, 950
MvaI CCWGG 2 cut(s) 527, 950
MwoI GCNNNNNNNGC 2 cut(s) 251, 782
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 835
NlaIII CATG 2 cut(s) 347, 671
NlaIV GGNNCC 1 cut(s) 947
NspI RCATGY 1 cut(s) 347
PaeI GCATGC 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 926
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 5 cut(s) 35, 119, 555, 578, 909
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 1 cut(s) 616
Psp6I CCWGG 2 cut(s) 525, 948
PspEI GGTNACC 1 cut(s) 728
PspGI CCWGG 2 cut(s) 525, 948
PspN4I GGNNCC 1 cut(s) 947
PspPI GGNCC 1 cut(s) 945
PstNI CAGNNNCTG 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 4 cut(s) 128, 237, 362, 857
RsaNI GTAC 4 cut(s) 127, 236, 361, 856
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 20, 249
SatI GCNGC 1 cut(s) 615
Sau96I GGNCC 1 cut(s) 945
ScaI AGTACT 1 cut(s) 237
ScrFI CCNGG 3 cut(s) 527, 684, 950
SfaNI GCATC 1 cut(s) 440
Sfr274I CTCGAG 1 cut(s) 926
SinI GGWCC 1 cut(s) 945
SlaI CTCGAG 1 cut(s) 926
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 248, 926
SmoI CTYRAG 2 cut(s) 248, 926
SphI GCATGC 1 cut(s) 347
Sse9I AATT 6 cut(s) 213, 220, 394, 412, 508, 750
SsiI CCGC 2 cut(s) 254, 755
SspI AATATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 525, 682, 948
TaaI ACNGT 3 cut(s) 50, 811, 891
TaqI TCGA 2 cut(s) 122, 927
TasI AATT 6 cut(s) 213, 220, 394, 412, 508, 750
TatI WGTACW 4 cut(s) 126, 235, 360, 855
TfiI GAWTC 5 cut(s) 35, 119, 555, 578, 909
Tru1I TTAA 2 cut(s) 20, 249
Tru9I TTAA 2 cut(s) 20, 249
TscAI CASTG 2 cut(s) 55, 799
TseI GCWGC 1 cut(s) 614
TspDTI ATGAA 7 cut(s) 56, 105, 149, 329, 616, 795, 909
TspGWI ACGGA 2 cut(s) 168, 452
TspRI CASTG 2 cut(s) 55, 799
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 945
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 926
XspI CTAG 1 cut(s) 575
ZrmI AGTACT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.